Codon usage bias and A+T content variation in human papillomavirus genomes

We analyzed the codon usage bias of eight open reading frames (ORFs) across up to 79 human papillomavirus (HPV) genotypes from three distinct phylogenetic groups. All eight ORFs across HPV genotypes show a strong codon usage bias, amongst degenerately encoded amino acids, toward 18 codons mainly with T at the 3rd position. For all 18 degenerately encoded amino acids, codon preferences amongst human and animal PV ORFs are significantly different from those averaged across mammalian genes. Across the HPV types, the L2 ORFs show the highest codon usage bias (73.2 +/- 1.6% and the E4 ORFs the lowest (51.1 +/- 0.5%), reflecting as similar bias in codon 3rd position A + T content (L2: 76.1 +/- 4.2%; E4: 58.6 +/- 4.5%). The E4 ORF, uniquely amongst the HPV ORFs, is G + C rich, while the other ORFs are A + T rich. Codon usage bias correlates positively with A + T content at the codon 3rd position in the E2, E6, L1 and L2 ORFs, but negatively in the E4 ORFs. A general conservation of preferred codon usage across human and non-human PV genotypes whether they originate from a same supergroup or not, together with observed difference between the preferred codon usage for HPV ORFs and for genes of the cells they infect, suggests that specific codon usage bias and A + T content variation may somehow increase the replicational fitness of HPVs in mammalian epithelial cells, and have practical implications for gene therapy of HPV infection. (C) 2003 Elsevier B.V. All rights reserved.

In situ characterization of stickiness of sugar-rich foods using a linear actuator driven stickiness testing device

A stickiness testing device based on the probe tack test has been designed and tested. It was used to perform in situ characterization of drying hemispherical drops with an initial radius 3.5 mm. Tests were carried out in two drying temperatures, 63 and 95 degreesC. Moisture and temperature histories of the drying drops of fructose, honey, sucrose, maltodextrin and sucrose-maltodextrin mixtures were determined. The rates of moisture evaporation of the fructose solution was the fastest while those of the maltodextrin solution was the lowest. A profile reversal was observed when the temperature profiles of these materials were compared. Different modes of failure were observed during the stickiness tests. Pure fructose and honey solutions remained completely sticky and failed cohesively until the end of drying. Pure sucrose solution remained sticky and failed cohesively until complete crystallization occurred. The surface of the maltodextrin drops formed a skin shortly after the start of drying. It exhibited adhesive failure and reached a state of non-adhesion. Addition of maltodextrin significantly altered the stickiness of sucrose solution. (C) 2002 Elsevier Science Ltd. All rights reserved.

Surface stickiness of drops of carbohydrate and organic acid solutions during convective drying: Experiments and modeling

Drying kinetics of low molecular weight sugars such as fructose, glucose, sucrose and organic acid such as citric acid and high molecular weight carbohydrate such as maltodextrin (DE 6) were determined experimentally using single drop drying experiments as well as predicted numerically by solving the mass and heat transfer equations. The predicted moisture and temperature histories agreed with the experimental ones within 6% average relative (absolute) error and average difference of +/- 1degreesC, respectively. The stickiness histories of these drops were determined experimentally and predicted numerically based on the glass transition temperature (T-g) of surface layer. The model predicted the experimental observations with good accuracy. A nonsticky regime for these materials during spray drying is proposed by simulating a drop, initially 120 mum in diameter, in a spray drying environment.

Isolation and characterization of a cone snail protease with homology to CRISP proteins of the pathogenesis-related protein superfamily

The pathogenesis-related (PR) protein superfamily is widely distributed in the animal, plant, and fungal kingdoms and is implicated in human brain tumor growth and plant pathogenesis. The precise biological activity of PR proteins, however, has remained elusive. Here we report the characterization, cloning and structural homology modeling of Tex31 from the venom duct of Conus textile. Tex31 was isolated to >95% purity by activity-guided fractionation using a para-nitroanilide substrate based on the putative cleavage site residues found in the propeptide precursor of conotoxin TxVIA. Tex31 requires four residues including a leucine N-terminal of the cleavage site for efficient substrate processing. The sequence of Tex31 was determined using two degenerate PCR primers designed from N-terminal and tryptic digest Edman sequences. A BLAST search revealed that Tex31 was a member of the PR protein superfamily and most closely related to the CRISP family of mammalian proteins that have a cysteine-rich C-terminal tail. A homology model constructed from two PR proteins revealed that the likely catalytic residues in Tex31 fall within a structurally conserved domain found in PR proteins. Thus, it is possible that other PR proteins may also be substrate-specific proteases.

Role of HuR in skeletal myogenesis through coordinate regulation of muscle differentiation genes

In this report, we investigate the role of the RNA-binding protein HuR during skeletal myogenesis. At the onset of myogenesis in differentiating C2C12 myocytes and in vivo in regenerating mouse muscle, HuR cytoplasmic abundance increased dramatically, returning to a predominantly nuclear presence upon completion of myogenesis. mRNAs encoding key regulators of myogenesis-specific transcription (myogenin and MyoD) and cell cycle withdrawal (p21), bearing AU-rich regions, were found to be targets of HuR in a differentiation-dependent manner. Accordingly, mRNA half-lives were highest during differentiation, declining when differentiation was completed. Importantly, HuR-overexpressing C2C12 cells displayed increased target mRNA expression and half-life and underwent precocious differentiation. Our findings underscore a critical function for HuR during skeletal myogenesis linked to HuR's coordinate regulation of muscle differentiation genes.

G-values for scission and crosslinking on γ-radiolysis of Ultem at 303 K

The radiation chemical yields G(S) and G(X) for H-linking and Y-linking models for Ultem have been calculated from molecular weight analysis by gel permeation chromatography. These G-values have been compared with the G-values obtained from analysis of soluble fractions above the gel dose, Which have been reported in previous works. An analysis of the molecular weight data in terms of H-linking and Y-linking mechanisms yielded values of G(S-H) = 1.0 x 10(-3) and G(H) = 6.0 x 10(-3) and G(S-Y) = 1.3 x 10(-2) and G(Y) = 1.8 x 10(-2). The corresponding values obtained from the solubility data were G(SH) = 0.53 x 10(-2), G(H) = 1.39 x 10(-2), G(S-Y) = 4.2 x 10(-2) and G(Y) - 4.6 x 10(-2). The origin of the disagreement between the molecular weight and solubility values is not clear, but it could arise as a result of observed microgel formation below the reported gel dose of 0.13 MGy. Whether the crosslink mechanism proceeds by an H-linking or Y-linking process is also unclear and will require direct observation of the crosslinking structures.

Boletim eletr??nico de bibliografias especializadas: igualdade de g??nero

A 2?? edi????o de 2013 do Boletim Eletr??nico de Bibliografias Especializadas destaca o tema Igualdade de G??nero. O documento traz indica????es de pu-blica????es do acervo da Biblioteca Graciliano Ramos/ENAP com reflex??es acerca das desi-gualdades entre homens e mulheres e suas consequ??ncias ?? sociedade. O objetivo ?? dar publicidade a esses materiais, visando a con-tribuir para uma melhor compreens??o do com-plexo cen??rio de defini????o das prioridades p??blicas e da formula????o de pol??ticas p??blicas governamentais comprometidas com a pers-pectiva de g??nero, em seus diversos aspectos. De acordo com a Organiza????o das Na????es Unidas para a Educa????o, a Ci??ncia e a Cultura (Unesco), os direitos das mulheres devem ser entendidos como direitos humanos e cultu-rais fundamentais. J?? a Pol??tica Nacional para as Mulheres, coordenada pela Secre-taria Especial de Pol??ticas para as Mulhe-res (SPM), da Presid??ncia da Rep??blica, tem como pressupostos e princ??pios a equi-dade, a autonomia das mulheres, a laicida-de do Estado, a universalidade das pol??ti-cas, a justi??a social, a transpar??ncia dos atos p??blicos, a participa????o e o controle social.

G??nero, ra??a e espa??os de poder: o caso de Maria Ant??nia e Geraldo

O caso relata uma situa????o de promo????o em ??rg??o p??blico na qual dois funcion??rios ??? uma mulher negra e um homem branco - se mostram como candidatos ao cargo. S??o apresentados os perfis e habilidades profissionais dos dois servidores e, ao final, a decis??o tomada pelo Secret??rio, chefe de ambos. O estudo suscita discuss??es sobre pr??ticas discriminat??rias nos espa??os de poder das institui????es p??blicas e o papel do dirigente para combater ou difundir tais pr??ticas. Pode ser aplicado em cursos sobre lideran??a, gest??o de pessoas e ??tica e servi??o p??blico

Gentileza ou ass??dio: conflitos de g??nero e de ra??a nas rela????es de trabalho

Com o afastamento do chefe do setor por quest??es m??dicas, Carla, que j?? exercia eventualmente a chefia da equipe, tornou-se a substituta do cargo, s?? n??o contava com o ass??dio de Ricardo, funcion??rio querido por todos. As investidas foram ficando cada vez mais agressivas e Carla n??o sabia mais como lidar com a situa????o. Come??ou a ter problemas com a sua equipe e sofrer difama????es por parte de Ricardo. O cen??rio encontrado pelo chefe ao voltar da licen??a foi de uma equipe desestabilizada. O caso trata do tema de ass??dio moral, agregado ?? quest??o racial e de g??nero, e suscita discuss??o sobre como um dirigente deve atuar para evitar a pr??tica dos ass??dios moral e sexual na equipe que gerencia, bem como para remediar situa????es j?? consolidadas. Pode ser aplicado em cursos sobre lideran??a, gest??o de pessoas e ??tica e servi??o p??blico

H?? um g??nero mais adequado para determinada fun????o?

Carolina foi aprovada em concurso p??blico para cargo t??cnico de hidrot??cnico e assinou contrato de experi??ncia por 90 dias. Contudo, durante a realiza????o das atividades inerentes ao cargo, n??o recebeu nenhuma orienta????o do seu supervisor. No momento da avalia????o de desempenho, foi mal avaliada tanto pelo supervisor quanto por sua chefia, que desde o in??cio demonstrava que o cargo n??o era apropriado para mulheres. Por conta dessa avalia????o, Carolina buscou ajuda na Ouvidoria do ??rg??o, mas acabou sendo demitida. Optou, ent??o, por recorrer ?? Justi??a. O caso trata de situa????o na qual ?? colocada em xeque a quest??o de g??nero para determinada fun????o no servi??o p??blico. O estudo pode ser aplicado em cursos com enfoque em quest??es vinculadas ?? diversidade de g??nero, ??s posturas das chefias que lidam com avalia????o de desempenho, bem como ao papel da Ouvidoria

Projeto b??sico: oficina de avalia????o do Programa Estudante Conv??nio de Gradua????o -PEC-G

Contrata????o de servi??os t??cnicos profissionais especializados de modera????o de Oficina Sob Medida, objetivando a realiza????o de Oficina de Avalia????o

G??nero, ra??a e compet??ncias de dire????o no servi??o p??blico federal

O relat??rio, que teve sua publica????o apoiada pela Canad?? School of Public Service, apresenta os resultados de uma pesquisa sobre a dificuldade de acesso de mulheres e negros aos cargos superiores da administra????o p??blica federal, bem como os conhecimentos, habilidades e atitudes necess??rios para o desempenho de cargos de dire????o desses segmentos