Single molecule simulation of diffusion and enzyme kinetics

This work presents a molecular-scale agent-based model for the simulation of enzymatic reactions at experimentally measured concentrations. The model incorporates stochasticity and spatial dependence, using diffusing and reacting particles with physical dimensions. We developed strategies to adjust and validate the enzymatic rates and diffusion coefficients to the information required by the computational agents, i.e., collision efficiency, interaction logic between agents, the time scale associated with interactions (e.g., kinetics), and agent velocity. Also, we tested the impact of molecular location (a source of biological noise) in the speed at which the reactions take place. Simulations were conducted for experimental data on the 2-hydroxymuconate tautomerase (EC 5.3.2.6, UniProt ID Q01468) and the Steroid Delta-isomerase (EC 5.3.3.1, UniProt ID P07445). Obtained results demonstrate that our approach is in accordance to existing experimental data and long-term biophysical and biochemical assumptions.

Anaerobic oxidation of methane associated with sulfate reduction in a natural freshwater gas source

The occurrence of anaerobic oxidation of methane (AOM) and trace methane oxidation (TMO) was investigated in a freshwater natural gas source. Sediment samples were taken and analyzed for potential electron acceptors coupled to AOM. Long-term incubations with 13C-labeled CH4 (13CH4) and different electron acceptors showed that both AOM and TMO occurred. In most conditions, 13C-labeled CO2 (13CO2) simultaneously increased with methane formation, which is typical for TMO. In the presence of nitrate, neither methane formation nor methane oxidation occurred. Net AOM was measured only with sulfate as electron acceptor. Here, sulfide production occurred simultaneously with 13CO2 production and no methanogenesis occurred, excluding TMO as a possible source for 13CO2 production from 13CH4. Archaeal 16S rRNA gene analysis showed the highest presence of ANME-2a/b (ANaerobic MEthane oxidizing archaea) and AAA (AOM Associated Archaea) sequences in the incubations with methane and sulfate as compared with only methane addition. Higher abundance of ANME-2a/b in incubations with methane and sulfate as compared with only sulfate addition was shown by qPCR analysis. Bacterial 16S rRNA gene analysis showed the presence of sulfate-reducing bacteria belonging to SEEP-SRB1. This is the first report that explicitly shows that AOM is associated with sulfate reduction in an enrichment culture of ANME-2a/b and AAA methanotrophs and SEEP-SRB1 sulfate reducers from a low-saline environment.

Integración de la industria del gas natural en el Mercosur. Un modelo de redes

El objetivo de este trabajo es identificar la política óptima (considerando producción, transporte y regulación) para la integración de la industria de gas natural en el Mercosur. Se analizarán factores que promueven o limitan la integración en la región. Utilizando un modelo matemático de flujo de redes, se minimizará el costo total (producción y transporte) para la región en su conjunto, satisfaciendo las restricciones de producción, capacidad de transporte y equilibrio (oferta igual a demanda) en cada nodo. El costo total (CT) de la producción y transporte de gas natural (considerando nodos para cada país en la región) es la función objetivo. El proceso de optimización consiste en identificar el nivel de gas natural producido y transportado que minimiza el costo total del sistema para la región. El modelo es estático, no considerando una optimización dinámica con relación a las reservas remanentes. Restricciones Consideramos cuatro restricciones en operación, a saber: 1. Equilibrio en los nodos: esta ecuación establece el equilibrio entre la oferta y la demanda de gas natural en cada nodo. La oferta incluye la producción local y las importaciones. Por su parte, la demanda incluye el consumo doméstico más las exportaciones. 2. Capacidad de producción en cada cuenca: esta restricción establece que las cantidades producidas en cada cuenca debería ser menor o igual a su capacidad de producción. Ello también permite la existencia de una utilización no plena de la capacidad. La capacidad máxima de producción en cada cuenca está determinada sobre la base de una medida de política para cada país a través de la cual el horizonte de consumo de las reservas probadas está establecido. Dada esta relación, el límite sobre la producción de cada año está fijado. En otras palabras, el nivel de producción no está basado ni en la capacidad instalada de producción ni en los precios, sino en la política de agotamiento decidida sobre las reservas probadas en el año de calibración del modelo. Esto permite diferentes escenarios para el análisis. Para las simulaciones se tomó el ratio de reservas a producción en el año de calibración del modelo. 3. Capacidad de transporte: el gas transportado a través de un gasoducto (los operativos y aquellos que están en plan de construcción), en general, y el gas transportado desde cada cuenca a cada mercado, en particular, debería ser menor o igual a la capacidad del gasoducto. 4. Nivel no negativo de gas natural producido: esto evita la existencia de soluciones inconsistentes no sólo desde un punto de vista económico sino también técnico. Referencias Banco Interamericano de Desarrollo BID (2001). Integración Energética en el Mercosur Ampliado, Washington DC. Beato, Paulina and Juan Benavides (2004). Gas Market Integration in the Southern Cone. Inter-American Development Bank. Washington, D.C. Conrad, Jon M. (1999). Resource Economics. Cambridge University Press. United States of America. Dasgupta, P.S. and G. M. Heal (1979). Economic Theory and Exhaustible Resources. Cambridge University Press. United States of America. Dos Santos, Edmilson M, Victorio E. Oxilia Dávalos, and Murilo T. Werneck Fagá (2006). “Natural Gas Integration in Latin America: Forward or Backwards?”. Revue de l’Energie, Nº 571, mai-juin. Fagundes de Almeida, E.L. y Trebat, N. (2004). “Drivers and barriers to cross-border gas trade in the southern cone”. Oil, Gas & Energy Law Intelligence, Vol. 2, Nº 3, Julio. Givogri, Pablo (2007). “Condiciones de abastecimiento y precios de la industria del gas de Argentina en los próximos años”. Fundación Mediterránea. Julio. Córdoba, Argentina. Kozulj, Roberto (2004). “La industria del gas natural en América del Sur: situación y posibilidades de la integración de los mercados”. Serie Recursos Naturales e Infraestructura. Nº 77. CEPAL. Santiago de Chile, Chile. Diciembre.

Untersuchung des Flüssigkeitseintrages auf die Temperaturverteilung in Gas-/Feststoff-Wirbelschichten

Liquid separation efficiency, liquid penetration, modeling, arrays of temperature, distribution, fluidized bed, two-phase-nozzle

Analysis of energy efficiency of gas driven heat pumps

Magdeburg, Univ., Fak. für Verfahrens- und Systemtechnik, Diss., 2011

Stabilized finite element methods applied to transient convection-diffusion-reaction and population balance equations

Magdeburg, Univ., Fak. für Mathematik, Diss., 2011

Adaptive numerical simulation of reaction - diffusion systems

Fluidized beds, granulation, heat and mass transfer, calcium dynamics, stochastic process, finite element methods, Rosenbrock methods, multigrid methods, parallelization

Electrochemical high temperature membrane reactor for the processing of hydrogen-carbon monoxide gas mixtures

Magdeburg, Univ., Fak. für Verfahrens- und Systemtechnik, Diss., 2013

Electrochemical oxidation of H 2, CO gas mixtures in polymer-electrolyte-membrane fuel cells

Magdeburg, Univ., Fak. für Verfahrens- und Systemtechnik, Diss., 2014

Funktionelle Untersuchungen zur pulmonalen Diffusion, dem pulmonalen kapillären Blutvolumen und der Rolle des Endothelin-1 bei Patienten mit Leberzirrhose

Magdeburg, Univ., Med. Fak., Diss., 2015

Experimental and theoretical analysis of the cyclic water gas shift reactor

Magdeburg, Univ., Fak. für Verfahrens- und Systemtechnik, Diss., 2015

Static diffusion models of the upper atmosphere with empirical temperature profiles.

v. 8 no. 9

Semidiscretization and long-time asymptotics of nonlinear diffusion equations

We review several results concerning the long time asymptotics of nonlinear diffusion models based on entropy and mass transport methods. Semidiscretization of these nonlinear diffusion models are proposed and their numerical properties analysed. We demonstrate the long time asymptotic results by numerical simulation and we discuss several open problems based on these numerical results. We show that for general nonlinear diffusion equations the long-time asymptotics can be characterized in terms of fixed points of certain maps which are contractions for the euclidean Wasserstein distance. In fact, we propose a new scaling for which we can prove that this family of fixed points converges to the Barenblatt solution for perturbations of homogeneous nonlinearities for values close to zero.

Composition of Greenhouse Gas Emissions in Spain: an Input-Output Analysis

Extending the traditional input-output model to account for the environmental impacts of production processes reveals the channels by which environmental burdens are transmitted throughout the economy. In particular, the environmental input-output approach is a useful technique for quantifying the changes in the levels of greenhouse emissions caused by changes in the final demand for production activities. The inputoutput model can also be used to determine the changes in the relative composition of greenhouse gas emissions due to exogenous inflows. In this paper we describe a method for evaluating how the exogenous changes in sectorial demand, such as changes in private consumption, public consumption, investment and exports, affect the relative contribution of the six major greenhouse gases regulated by the Kyoto Protocol to total greenhouse emissions. The empirical application is for Spain, and the economic and environmental data are for the year 2000. Our results show that there are significant differences in the effects of different sectors on the composition of greenhouse emissions. Therefore, the final impact on the relative contribution of pollutants will basically depend on the activity that receives the exogenous shock in final demand, because there are considerable differences in the way, and the extent to which, individual activities affect the relative composition of greenhouse gas emissions. Keywords: Greenhouse emissions, composition of emissions, sectorial demand, exogenous shock.