内蒙古半干旱温带草原土壤微生物对环境变化的响应

地处干旱半干旱区的我国北方温带草原是欧亚大陆草原生物区系的重要组成部分，对全球变化敏感。土壤微生物在联系生态系统地上和地下部分起着中枢作用，由于其周转速率快，对环境因子变化响应快速，可用来指示短期内环境因子的变化对生态系统的影响。目前关于内蒙古半干旱温带草原的研究主要集中在生态系统地上部分，对地下尤其是土壤微生物对全球变化及人为干扰的响应研究仍然缺乏。本研究选取位于内蒙古多伦县的代表性的半干旱温带草原，通过对多种环境因子变化及人为干扰下土壤微生物量、呼吸、氮可利用性及转化等参数进行测定，旨在探讨全球变化及人为干扰对土壤微生物的影响，为地上植物群落的响应及生态系统地上与地下部分的联系提供机理解释，研究结果如下： 通过研究土壤微生物生物量和呼吸生长季的动态变化，以及它们对地形、火烧、施用氮肥及其交互作用的响应，结果表明，土壤微生物参数在生长季表现出明显的季节变异。土壤微生物生物量碳(MBC)、氮(MBN)分别在坡下比坡上高出14.8%和11.5%。但是，有机碳微中生物量碳的百分比(Cmic/Corg)以及总氮中微生物量氮的百分比(Nmic/Ntot)分别在坡上比坡下高16.9%和26.2%。微生物呼吸(MR)和代谢熵(qCO2)都不受地形的影响。火烧在整个生长季分别提高MBC和MBN29.8%和14.2%，MR和qCO2 则有降低趋势，尤其是在八月份。火烧在坡上提高Cmic/Corg 和Nmic/Ntot，但是在坡下对二者没有影响。氮肥的施用在第一个生长季对所有土壤微生物指标都没有影响。 草原生态中环境因子的空间和时间变异可以影响土壤微生物以及它们对干扰的响应。通过对地形、火烧、施肥进行三年连续处理和观测土壤微生物指标发现，1)土壤微生物参数有明显的年际变异。2)在相对湿润的年份，土壤微生物量在坡下比坡上高，但是Cmic/Corg和Nmic/Ntot 在坡上高于坡下。但在干旱年份里，所有土壤微生物参数都是在坡下高于坡上，且由于地形引起的差异在干旱年份表现更强烈。MBC、MBN、MR 的变异系数在坡上高，表明土壤微生物量和活性在坡下稳定性高。说明了土壤水分含量在半干旱温带草原调节土壤微生物和其稳定性方面起着重要作用。地形对土壤可利用的氮没有影响。3)每年一次的火烧对土壤微生物量、Cmic/Corg、Nmic/Ntot 有正效应但正效应随处理时间延长和处理次数增加而降低。火烧在在第一年内不论在坡上还是坡下都降低MR，但是在干旱年份里，火烧在坡上降低MR，在坡下提高MR。火烧在第二年里在坡下提高了土壤无机氮含量，但在坡上降低了土壤无机氮含量。在第三年，不论坡上还是坡下，火烧使得土壤无机氮含量降低。4)施用氮肥提高土壤无机氮含量，但是它对土壤微生物参数产生负效应，且负效应随着处理时间延长和处理次数的增加而增强。此外，氮肥增加了MBC、MBN、MR的变异系数。 土壤微生物在生态系统碳氮循环中起着关键作用，但是关于氮素添加是否促进或抑制土壤微生物生物量和活动仍然存在争议。在我国北方温带草原的这项研究目的在于探讨土壤微生物沿着一个施氮梯度的响应。本研究设置了每年一次、连续四年的八个水平(0, 1, 2, 4, 8, 16, 32, 64 g N m-2以尿素形式施入土壤)N处理。并在第三年和第四年测定了土壤微生物生物量碳、氮、磷、微生物呼吸和代谢熵、土壤无机氮、净氮矿化和硝化。大多数测定的微生物参数都在低施氮处理下有所增加，相反在高施氮处理下降低。在取样测定的两年中，对土壤微生物生长和活动的最适施氮量大致为2 g N m-2 y-1；而施氮的阈值在16 和32 gN m-2 y-1之间，在此阈值之上，土壤pH、微生物生物量、微生物呼吸、Cmic/Corg、Nmic/Ntot 急剧降低，相反，土壤无机氮、净氮矿化和硝化急剧增加。土壤微生物对低施氮处理和高施氮处理的特异性响应(Differential Response)可能是由于微生物碳氮限制的转换、以及高施氮处理下土壤pH值降低的毒害影响而引起的。本研究中观察到的土壤微生物沿着施氮梯度的非线性响应有助于解决不同报道及不同生态系统中氮素添加对土壤微生物影响的争议。 气候变化将显著影响陆地生态系统的碳循环。以2005年4月开始的一项野外控制实验为平台，检验我国北方半干旱典型草原土壤和微生物呼吸以及微生物生物量对试验增温和增加降水的响应。在3 个实验年份内(2005-2007 年)测定了整个生长季节的土壤呼吸、微生物呼吸、微生物生物量碳和微生物生物量氮。结果表明，1)受到降水年际波动的影响，土壤和微生物呼吸以及微生物生物量均存在明显的年际变化。2)实验室内沿着一个水分梯度的培养实验揭示了微生物呼吸对温度的响应受到低土壤水分含量的限制。3)在三年时间内，试验增温引起土壤和微生物呼吸以及微生物生物量的显著降低，说明试验增温通过加剧土壤水分胁迫的间接负效应大于温度增加的直接正效应。试验增温所引起的蒸发散的增加导致土壤水分可利用性减少到某一胁迫阈值(Threshold)之下，并因此抑制了植物生长、根系和微生物活动。4)降水增加显著刺激了土壤和微生物呼吸以及其它微生物参数，而且这种正效应随着时间而增强。研究结果表明：在半干旱温带草原，土壤水分在调节土壤和微生物呼吸以及微生物生物量及其对气候变化的响应方面所起的作用比温度更为重要。比较温带草原土壤呼吸与总初级生产力的相对变化显示，相对于光合碳固定而言，增温导致更多而增雨引起较少的呼吸碳损失。这一发现说明：除非降水增加，气候变暖情形下，我国北方的干旱半干旱温带草原将可能作为一个净的碳源。

内蒙古多伦草原土壤微生物多样性对全球变化的响应

气候变暖和氮沉降是全球变化现象中最为重要和广为关注的两个方面，它们给陆地生态系统带来了深刻的影响。目前，已有众多研究就二者对地上植被的影响展开了大量工作;而作为陆地生态系统的另一重要生命组分，土壤微生物群落对二者的响应与适应机制还不明了，还需要相关工作的不断补充和完善。本文正是在温带典型草原通过设置增温、施氮等模拟控制实验，探讨增温、施氮及其交互效应对草原生态系统土壤微生物群落多样性和功能多样性的影响，使我们对该地区土壤微生物群落的响应与适应有了一个初步的了解，有助于全面分析和评估气候变化对温带典型草原生态系统的影响。 目前，全球变暖表现出时间上的不均衡性，即夜间增温的幅度要大于白天增温的幅度，而且这种现象在欧亚大陆尤为普遍。这种气候变暖的不均衡性是否会给草原生态系统土壤微生物群落带来显著的影响是我们所关注的问题之一。在第二章中，于多伦典型草原设置了对照、白天增温、夜间增温和全天增温处理，处理时间起始于2006 年5 月，并通过磷脂脂肪酸和BIOLOG 分析方法分别对土壤微生物的群落多样性和碳源利用能力（即功能多样性）进行分析。结果表明，不同增温处理对土壤微生物群落组成的影响均不显著，而夜间增温对土壤细菌群落的碳源利用能力具有显著的促进作用。这说明土壤微生物群落结构对短期增温处理的响应要滞后于功能的响应，而功能上的响应又首先出现在细菌群落，并且这种响应表现为白天增温和夜间增温的非加和效应。 气候变暖往往与降雨的变化相伴而生，而水分又是半干旱典型草原重要限制因子，因此探讨降雨的变化对土壤微生物的影响有助于更深入的了解土壤微生物对气候变暖的响应。在第三章中，分别设置了对照、增温、夏季增雨及增温×夏季增雨处理，处理时间起始于2005 年4 月，并同样分析了土壤微生物的群落组成和功能多样性。结果表明，增温和夏季增雨对土壤微生物群落结构和功能的影响具有明显的一致性，二者均降低了革兰氏阴性菌的相对含量，并且促进了细菌群落的碳源利用能力。增温和增雨在影响细菌群落结构（即，革兰氏阴性菌与阳性菌之比）上具有一定程度的交互效应。 陆地生态系统生产力普遍受到土壤氮素的限制，由于人类活动的干扰，尤其是农业生产和化石燃料燃烧，使土壤氮素含量增加，改变土壤理化环境和地上植物群落，这将直接或间接地影响土壤微生物群落结构和功能。就已有的研究结果来看施氮究竟如何影响土壤微生物群落尚无定论。第四章主要是针对相关研究结果上的分歧，在2003 年设置的0-64 g N m-2 yr-1 的指数施氮梯度实验上进行土壤理化因子、微生物量、净氮矿化和微生物碳源利用能力的分析。结果表明，土壤微生物群落对施氮的响应存在一个介于16 和32 g N m-2y-1 最优施氮量，即低于最优施氮量施氮处理表现为对土壤微生物的促进作用，而过高的施氮量则表现为抑制作用。这一结果说明施氮量是影响土壤微生物对施氮处理做出响应的重要方面之一，有助于解释目前相关研究中出现的结果分歧。 第五章的研究则是考虑了地形和火烧这两个草原生态系统普遍存在的干扰因素，比较分析二者与施氮处理对土壤微生物群落结构的影响。实验设置在多伦典型草原一个坡度为15﹪的南向阳坡，坡上坡下分别设置对照、施氮和火烧处理，处理的起始时间为2005 年4 月。结果表明，土壤微生物群落结构存在地形上的显著差异，表现为坡下以细菌类群占优势，而坡上真菌类群的相对优势较大;火烧对土壤微生物群落结构的影响显著，并表现出明显的地形上的差异，即坡下微生物对火烧的响应敏感性要高于坡上;而短期的施氮处理对土壤微生物群落结构的影响不显著。第六章的研究主要是针对增温、施氮和增温×施氮处理对土壤微生物群落结构和功能的影响，处理时间起始于2006 年5 月。结果表明，土壤微生物群落结构和功能年际变化显著;增温和施氮对土壤微生物的影响均不显著，但增温复合施氮处理中的土壤微生物群落结构表现出一定的响应趋势。

土壤有机物添加对温带半干旱草地地下生物过程的影响

大气CO2 浓度和降水量增加有可能大幅提高中国北方部分草地生态系统净初级生产力，进而导致向土壤中输送的有机物相应增加。本研究以位于内蒙古自治区东乌珠穆沁旗内的半干旱草地生态系统为研究对象，通过向10−20 cm 土层添加不同质量和数量的植物凋枯物碎屑模拟有机物输入增加和喷灌模拟降水量提升，同时测定土壤微生物群落动态和植物生长指标，探讨在增加有机物输入和土壤水分的情况下土壤生物过程的变化及其对土壤碳排放和贮存的反馈作用。 研究结果表明，有机物添加可促进植物地上部分及根系的生长，并显著提高土壤中可溶性有机碳（能量）和氮（养分）的含量。土壤能量和养分水平的提高促进了土壤微生物的生长：在底物可利用性水平较高时，r−对策微生物（指具有生长迅速、C/N 值较低的微生物群组）在群落中占优势地位；随着底物水平的降低，土壤中K-对策微生物（指具有生长缓慢、C/N 值较高的微生物群组）在群落中逐渐占据优势地位。土壤微生物群落组成的改变进一步导致了微生物功能群代谢活性和特征的变化，具体表现为提高了有机物添加处理中土壤细菌群落的代谢潜能，并使细菌在群落水平上的生理剖面特征明显区别于未添加有机物的处理。 研究样地内土壤微生物主要受到底物中的能量（碳）限制，土壤活性有机质库作为可利用性较高的能量和养分的重要来源，对土壤微生物活性和土壤碳周转起着比水分因子更加重要的作用。土壤水分主要影响植物生长和根系活性，并增加了土壤微生物对底物响应的复杂性，但它对地下生物过程的作用程度以底物中能量和养分水平为前提。 利用稳定性13C 同位素示踪技术测量后发现，添加C4-植物凋枯物会加速C3 底物中碳的分解速度。结合有机物添加后土壤有机质库的变化，可以推测植物凋枯物（即能量物质）输入增加会导致土壤原生有机碳的正向激发效应。在此过程中，土壤微生物群落组成及功能群代谢活性的变化起着至关重要的作用。 不同光合途径（C3 和C4）的植物和同一植物不同器官组织（地上部分和根系）的凋枯物添加对地下生物过程，特别是土壤微生物群落代谢功能的影响是不同的。在添加C3-草本凋枯物的处理中，土壤细菌群落主要利用的碳源为氨基酸类化合物；而在添加C4-植物凋枯物的处理中，土壤细菌群落主要利用的碳源为羧酸类化合物。 本研究在野外自然条件下证明了在能量缺乏的中国北方草地生态系统中，土壤有机物输入增加不但不会提高土壤有机碳库的大小，而且可能导致土壤原生有机碳的激发效应。在利用土壤呼吸与环境因子（如温度）的关系进行模拟预测土壤碳排放时，需要考虑不同生态系统底物中的能量和养分水平，以及土壤微生物和植物根系等地下生物过程对底物水平的适应性。

土壤微生物和酶对大气CO2浓度与温度升高的响应

土壤微生物(Soil microbes)是生态系统的重要组成部分，它参与土壤中复杂有机物质的分解和再合成，也参与C、N、S、P等的循环。土壤酶(Soil enzyme)是土壤中具有生物活性的蛋白质，它与微生物一起推动着土壤的生物化学过程，并在树木营养物质的转化中起着重要的作用。鉴于土壤微生物和土壤酶对环境变化的敏感性，它们在CO2浓度和温度升高时的反应将在很大程度上影响森林生态系统的结构和功能。因此，要全面评价大气CO2浓度和温度升高对整个生态系统的影响，有必要对CO2浓度和温度升高条件下的土壤微生物的反应进行深入的研究与探讨。本文应用自控、封闭、独立的生长室系统，研究了川西亚高山岷江冷杉（Abies faxoniana）根际、非根际土壤微生物数量，红桦（Betula albosinensis）根际微生物数量以及根际、非根际土壤酶活性对大气CO2浓度(环境CO2浓度+350±25μmol·mol-1，EC)和温度(环境温度+2.0±0.5℃，ET)升高及两者同时升高(ECT)的响应。结果表明： 1) EC和ET显著增加岷江冷杉根际微生物数量，但不同微生物种类对EC和ET的反应有所差异。6、8和10月，岷江冷杉根际微生物数量与对照(CK)相比，EC处理的根际细菌数量分别增加了35%、164%和312%，ET处理增加了30%、115%和209%；EC和ET处理对根际放线菌和根际真菌数量影响不显著。ECT处理的根际放线菌数量分别增加了49%、50%和96%，根际真菌数量增加了151%、57%和48%；而ECT对根际细菌数量影响不显著。EC、ET和ECT处理对岷江冷杉土壤微生物总数的根际效应明显，其R/S值分别为1.93、1.37和1.46(CK的R/S值为0.81)。 2) 红桦根际微生物数量对EC、ET和ECT的响应不同。生长季节(5~10月)，高密度的红桦根际细菌数量与CK 相比，EC的根际细菌数量分别增加28%、33%、423%、65%、43%和79%，而低密度的红桦根际细菌数量增加不显著。ET能显著增加根际细菌数量(7~10月)，其中高密度的根际细菌数量分别增加了377%、107%、35%、22%，而低密度的根际细菌数量分别增加了27%、27%、64%、48%；ECT对两个密度水平下根际细菌数量均未产生有显著的影响。高、低密度的红桦根际放线菌和根际真菌数量与 CK 相比，EC显著增加了低密度的红桦根际放线菌数量，而对高密度的根际放线菌数量无显著影响；ET和ECT对高低密度的红桦根际放线菌数量均未产生显著影响。EC和ET对高低密度的根际真菌数量也无显著影响，而ECT却显著增加了高低密度的根际真菌数量。 3) EC、ET和ECT处理的低密度红桦根际微生物(细菌、放线菌和真菌)数量没有显著高于或低于高密度根际微生物数量，表明短期内密度对红桦根际微生物数量不产生影响。 4) 不同种类的氧化还原酶对EC、ET和ECT的响应不同。5~10月，EC的红桦根际过氧化氢酶活性是CK 的1.44、1.06、1.11、1.10、1.12和1.24倍，差异显著(6月除外)；ET和ECT处理根际过氧化氢酶活性无显著增加。EC的红桦根际多酚氧化酶活性比CK显著增加；ET的根际多酚氧化酶活性显著高于CK(8月除外)。ECT的根际多酚氧化酶活性高于CK，差异不显著。EC的根际脱氢酶活性分别增加了46%、40%、133%、48%、17%和26%，差异显著。5~7月，ET和ECT的根际脱氢酶活性高于CK的脱氢酶活性，而8~9月则相反，差异性均不显著。 5) EC、ET和ECT对不同种类的水解酶的影响不同。EC能显著增加红桦根际脲酶活性，5~10月分别增加了29%、42%，、70%、67%、59%和57%。ET和ECT 对根际脲酶活性未产生显著影响。EC显著提高根际转化酶活性，5、6和9月EC的根际转化酶活性分别比CK高51%、42%和40%。5和10月，ET的根际转化酶活性低于CK，而其余月份却高于CK，但均具有显著性差异。ECT的根际转化酶活性与CK的根际转化酶活性有显著性差异(9月除外)，5、6和7月的根际转化酶活性分别提高了94%、198%和67%。 6) 与CK相比，EC、ET和ECT的非根际土壤微生物数量以及非根际土壤酶活性均无显著提高。EC、ET和ECT的过氧化氢酶、脲酶的根际效应明显，而多酚氧化酶和脱氢酶根际效应不明显。EC和ECT的转化酶根际效应明显，而ET的转化酶根际效应不明显。 It is well known that atmospheric CO2 concentration and temperature are increasing as a consequence of human activities. In past decades, considerable efforts had been put into investigating the effects of climate change on processes of forest ecological system. In general, studies had been mainly focused on the effects of elevated atmospheric CO2 on plant physiology and development, litter quality, and soil microorganisms. Studies showed that there was variation in the responses of root development and below-ground processes to climate between different plant communities. Since the concentration of CO2 in soil was much higher (10~50 times) than in the atmosphere, increasing levels of atmospheric CO2 may not directly in fluence below ground processes. Betula albosinensis and Abies faxoniana, as the dominated tree species of subalpine dark coniferous forest in the western Sichuan province, which play an important role in the structure and function of this kind of forest ecosystem. In our study, effects of elevated atmospheric CO2 concentration (350±25μmol·mol-1), increased temperature (2.0±0.5℃) and both of the two on the number of rhizospheric microbe and rhizospheric enzyme activity were studied by the independent and enclosed-top chamber’ system under high-frigid conditions. Responses of rhizospheric bacteria, actinomycetes and fungi number of Betula albosinensis and Abies faxoniana under different densities(high density with 84 stems·m-2, low density with 28 stems·m-2 ), and rhizospheric enzyme activity of Betula albo-sinensis to elevated CO2 concentration and increased temperature were analyzed and discussed. The results are as the following, 1) In comparion with the control, the numbers of rhizospheric bacteria of Abies faxoniana were increased by 35%, 164% and 312% significantly in June, August and October respectively of EC, and were increased by 30%, 115% and 209% respectively of ET.However the effect of EC and ET on rhizospheric actinomycetes and fungi was not significant. The number of rhizospheric actinomycetes of ECT were increased significantly by 49%, 50% and 96% respectively, and the increment of rhizospheric fungi were 151%, 57% and 48% respectively .The effect of ECT on rhizospheric bacteria was not significant. Rhizospheric effect of soil microbe for all treatments was significant, with the R/S of 1.93, 1.27 and 1.46 for EC, ET and ECT, respectively. 2) Treatment EC improved the number of rhizospheric bacteria of Betula albosinensis under high density significantly in comparison with the control, over the growing season, the greatest increment of rhizospheric bacteria was from July. However, EC had no effect on the number of rhizospheric bacteria under low density. Except May and June, treatment ET improved the number of rhizospheric signifcantly. The effect of treatment ECT on the number of rhizospheric bacteria under different densities was not significant. Of treatment EC, the number of rhizospheric actinomycetes of Betula albosinensis under low density were increased significantly, however, treatment EC did not stimulate the number of rhizospheric actinomycetes under high density. Simultaneously, treatment ET and ECT did not stimulate the number of rhizospheric actinomycetes. Finally, in treatment ECT, the number of rhizospheric fungi under high density were increased significantly, however treatment EC and ET did not stimulate the number of rhizospheric fungi under different densities. 3) Of treatment EC, ET and ECT, the number of rhizospheric microbe of Betula albosinensis under low density were not more or fewer than that of microbe under hign density along the growing season, which showed that plant density had no effect on the nmber of microbe. 4) From May to October, 2004，rhizospheric catalase activity of Betula albosinensis of treatment EC was 1.44, 1.06, 1.11, 1.10, 1.12 and 1.24 times as treatment CK respectively, and the difference was statistically significant(except June). Treatment ET and ECT did not increase rhizospheric catalase activity significantly. In treatment EC, the rhizospheric pohyphenol oxidase activity was higher than treatment CK significantly. The rhizospheric pohyphenol oxidase activity of treatment ET was higher than CK significantly (except August). The rhizospheric pohyphenol oxidase activity of treatment ECT was higher than CK, but the difference was not statistically significant. Over the growing period, the rhizospheric dehydrogenase activity were increased 46%, 40%, 133%, 48%, 17% and 26% respectively by treatment EC, and the difference was statistically significant. From May to July, the rhizospheric dehydrogenase activity in treatment ET and ECT was higher than CK, but from August to October, the rhizospheric dehydrogenase activity was lower than CK, the difference was not significant. 5) Treatment EC increased rhizospheric urease activity significantly, from May to October, rhizospheric urease activity were increased 29%, 42%, 70%, 67%, 59% and 57% respectively by EC. Treatment ET and ECT had no effect on rhizospheric urease activity. Treatment EC improved rhizospheric invertase activity significantly, in May, June and September, the rhizospheric invertase activity of treatment EC were increased 51%, 42% and 40% in comparison with the control. Except May and October, the rhizospheric invertase activity of treatment ET was markly higher than CK. The rhizospheric invertase activity of treatment ECT was significantly different from CK (except September), in May, June and July treatment ECT increased rhizospheric invertase activity by 94%, 198% and 67% respectively. 6) In comparison with the control, treatment EC, ET, and ECT had no effect on the number of non-rhizospheric microbe and non-rhizospheric enzyme activity. Rhizospheric effect of catalase and urease for all treatments was significant, but rhizospheric effect of pohyphenol oxidase and dehydrogenase was not significant. Rhizospheric effect of invertase of EC and ECT was significant, but rhizospheric effect of invertase of ET was not significant.

Efeitos da toxicidade por metais pesados em Rhizobium leguminosarum bv. trifolii: diversidade e resposta de população isoladas de uma mina de chumbo

Nas últimas décadas verificou-se um aumento da contaminação dos solos com metais pesados resultante de processos antropogénicos. As descargas de efluentes industriais, a actividade mineira e a aplicação de lamas residuais e de fertilizantes são as principais fontes de metais pesados. Em certas regiões, a acumulação destes elementos nos solos tem atingido níveis preocupantes para o equilíbrio dos ecossistemas. Vários estudos têm demonstrado que os metais influenciam os microrganismos afectando adversamente o seu crescimento, morfologia e actividades bioquímicas resultando num decréscimo da biomassa e diversidade. Entre os microrganismos do solo, as bactérias pertencentes ao género Rhizobium têm um elevado interesse científico, económico e ecológico devido à sua capacidade para fixar azoto. Deste modo, o trabalho desenvolvido ao longo desta tese incidiu sobre o efeito da toxicidade imposta pelos metais nas bactérias fixadoras de azoto, em particular em Rhizobium leguminosarum bv. trifolii e teve como principais objectivos: determinar o efeito dos metais pesados na sobrevivência e na capacidade de fixar azoto dos isolados de rizóbio; avaliar a influência dos metais na diversidade das populações de rizóbio isoladas de solos contaminados; determinar os níveis de tolerância do rizóbio a diferentes metais e analisar a resposta ao stresse oxidativo imposto pelo cádmio. A Mina do Braçal foi o local de estudo escolhido uma vez que os seus solos estão muito contaminados com metais em resultado da extracção de minério durante mais de 100 anos. Foram escolhidos 3 solos com diferentes graus de contaminação, o solo BC com concentrações reduzidas de metais, escolhido por estar numa zona já fora da mina e designado por solo controlo e os solos BD e BA considerados medianamente e muito contaminados, respectivamente. O Pb e o Cd foram os metais predominantes nestes solos, assim como o metalóide As, cujas concentrações ultrapassaram largamente os limites previstos na lei. Sendo as enzimas do solo boas indicadoras da qualidade do mesmo, foi determinada a actividade de algumas como a desidrogenase (DHA) e a catalase (CAT). Ambas as enzimas correlacionaramse negativamente com as concentrações de metais nos solos. A dimensão das populações indígenas de rizóbio nos solos contaminados (BD e BA) foi bastante baixa, 9,1 bactérias g-1 de solo e 7,3 bactérias g-1 de solo, respectivamente, quando em comparação com a população do solo BC (4,24x104 bactérias g-1 de solo). Estes resultados parecem estar relacionados com o elevado conteúdo em metais e com o pH ácido dos solos. A capacidade simbiótica também foi afectada pela presença de metais, uma vez que os isolados originários do solo BD mostraram menor capacidade em fixar azoto do que os isolados do solo controlo. A diversidade das populações de rizóbio foi determinada com recurso à análise dos perfis de plasmídeos, perfis de REP e ERIC-PCR de DNA genómico e perfis de proteínas e lipopolissacarídeos. No conjunto dos 35 isolados analisados foram identificados 11 plasmídeos com pesos moleculares entre 669 kb e 56 kb. Embora a incidência de plasmídeos tenha sido superior nos isolados do solo BC verificou-se maior diversidade plasmídica na população isolada do solo BD. Resultados similares foram obtidos com os perfis de REP e ERIC-PCR e perfis de proteínas, que indicaram maior diversidade nas populações dos solos contaminados (BD e BA), contrariamente ao verificado por outros autores. O grau de tolerância aos metais pesados e ao arsénio dos vários isolados testados dependeu do metal e do local de origem. No geral, os isolados do solo BD mostraram maior tolerância aos metais do que os isolados do solo controlo, o que está de acordo com o esperado uma vez que geralmente as populações dos locais contaminados são mais tolerantes. Contudo, os isolados do local mais contaminado (BA) foram muito tolerantes apenas ao chumbo mostrando-se sensíveis aos restantes metais. A inoculação dos solos BC, BD e BA após irradiação com estirpes seleccionadas de rizóbio permitiu avaliar a sua sobrevivência ao longo de 12 meses em condições mais realistas. Verificou-se que após um decréscimo inicial, os isolados inoculados no solo BC conseguiram recuperar a dimensão das suas populações para números similares aos inicialmente introduzidos, contrariamente ao verificado no solo BD onde o número de rizóbios decresceu ao longo dos 12 meses. As condições adversas do solo BA apenas permitiram a sobrevivência de 4 isolados até aos 3 meses e apenas dois deles conseguiram sobreviver após 12 meses, designadamente C 3-1 e A 17-3. Estes isolados possuem um plasmídeo de 669 kb que poderá estar na base da sobrevivência destas estirpes. Por outro lado, o último isolado é originário do solo contaminado e por isso estará também mais adaptado a sobreviver às elevadas concentrações de Pb existentes no solo BA. Por fim, constatou-se que o cádmio, um dos metais presente em concentrações mais elevadas nos solos em estudo, é um indutor de stresse oxidativo nos isolados de rizóbio menos tolerantes o que foi confirmado pelo aumento de ROS e danos celulares ao nível dos lípidos.

Diversité des champignons endophytes mycorhiziens et de classe II chez le pois chiche, et influence du génotype de la plante

réalisé en cotutelle avec la Faculté des Sciences de Tunis, Université Tunis El Manar.

Changes in amino acid enantiomers and microbial performance in soils from a subtropical mountain oasis in Oman abandoned for different periods

An important feature of maintaining the agricultural stability in millennia-old mountain oases of northern Oman is the temporary abandonment of terraces. To analyse the effects of a fallow period on soil microbial performance, i.e. microbial activity and microbial biomass, samples of eight terrace soils abandoned for different periods were collected in situ, assigned to four fallow age classes and incubated for 30 days in the laboratory after rewetting. The younger fallow age classes of 1 and 5 years were based on the records of the farmers’ recollections, the two older fallow age classes of 10–20 and 25–60 years according to the increase in the D -to- L ratio of valine and leucine enantiomers. The increase in these two ratios was in agreement with that of the D -to- L ratio of lysine. The strongest relationship was observed between the increase in the D -to- L ratio of lysine and the decrease in soil microbial biomass C. However, the most stringent coherence between the increase in fallow age and soil properties was revealed by the decreases in cumulative respiration and net N mineralisation rates with decreasing availability of substrate to soil microorganisms. During the 30-day incubation following rewetting, relative changes in microbial activity (respiration and net N mineralisation) and microbial biomass (C and N)indices were similar in the eight terrace soils on a fallow age-class-specific level, indicating that the same basic processes occurred in all of the sandy terrace soils investigated.

Effects of Organic and Inorganic Fertilizers on Growth and Yield of Banana (Musa AAA cv. Malindi) in Oman

The Sultanate of Oman is located on the south-eastern coast of the Arabian Peninsula, which lies on the south-western tip of the Asian continent. The strategic geographical locations of the Sultanate with its many maritime ports distributed on the Indian Ocean have historically made it one of the Arabian Peninsula leaders in the international maritime trade sector. Intensive trading relationships over long time periods have contributed to the high plant diversity seen in Oman where agricultural production depends entirely on irrigation from groundwater sources. As a consequence of the expansion of the irrigated area, groundwater depletion has increased, leading to the intrusion of seawater into freshwater aquifers. This phenomenon has caused water and soil salinity problems in large parts of the Al-Batinah governorate of Oman and threatens cultivated crops, including banana (Musa spp.). According to the Ministry of Agriculture and Fisheries, the majority of South Al-Batinah farms are affected by salinity (ECe > 4 dS m-1). As no alternative farmland is available, the reclamation of salt-affected soils using simple cultural practices is of paramount importance, but in Oman little scientific research has been conducted to develop such methods of reclamation. This doctoral study was initiated to help filling this research gap, particularly for bananas. A literature review of the banana cultivation history revealed that the banana germplasm on the Arabian Peninsula is probably introduced from Indonesia and India via maritime routes across the Indian Ocean and the Red Sea. In a second part of this dissertation, two experiments are described. A laboratory trial conducted at the University of Kassel, in Witzenhausen, Germany from June to July 2010. This incubation experiment was done to explore how C and N mineralization of composted dairy manure and date palm straw differed in alkaline non-saline and saline soils. Each soil was amended with four organic fertilizers: 1) composted dairy manure, 2) manure + 10% date palm straw, 3) manure + 30% date palm straw or 4) date palm straw alone, in addition to un-amended soils as control. The results showed that the saline soil had a lower soil organic C content and microbial biomass C than the non-saline soil. This led to lower mineralization rates of manure and date palm straw in the saline soil. In the non-saline soil, the application of manure and straw resulted in significant increases of CO2 emissions, equivalent to 2.5 and 30% of the added C, respectively. In the non-amended control treatment of the saline soil, the sum of CO2-C reached only 55% of the soil organic C in comparison with the non-saline soil. In which 66% of the added manure and 75% of the added straw were emitted, assuming that no interactions occurred between soil organic C, manure C and straw C during microbial decomposition. The application of straw always led to a net N immobilization compared to the control. Salinity had no specific effect on N mineralization as indicated by the CO2-C to Nmin ratio of soil organic matter and manure. However, N immobilization was markedly stronger in the saline soil. Date palm straw strongly promoted saprotrophic fungi in contrast to manure and the combined application of manure and date palm straw had synergistic positive effects on soil microorganisms. In the last week of incubation, net-N mineralization was observed in nearly all treatments. The strongest increase in microbial biomass C was observed in the manure + straw treatment. In both soils, manure had no effect on the fungi-specific membrane component ergosterol. In contrast, the application of straw resulted in strong increases of the ergosterol content. A field experiment was conducted on two adjacent fields at the Agricultural Research Station, Rumais (23°41’15” N, 57°59’1” E) in the South of Al-Batinah Plain in Oman from October 2007 to July 2009. In this experiment, the effects of 24 soil and fertilizer treatments on the growth and productivity of Musa AAA cv. 'Malindi' were evaluated. The treatments consisted of two soil types (saline and amended non-saline), two fertilizer application methods (mixed and ring applied), six fertilizer amendments (1: fresh dairy manure, 2: composted dairy manure, 3: composted dairy manure and 10% date palm straw, 4: composted dairy manure and 30% date palm straw, 5: only NPK, and 6: NPK and micronutrients). Sandy loam soil was imported from another part of Oman to amended the soil in the planting holes and create non-saline conditions in the root-zone. The results indicate that replacing the saline soil in the root zone by non-saline soil improved plant growth and yield more than fertilizer amendments or application methods. Particularly those plants on amended soil where NPK was applied using the ring method and which received micronutrients grew significantly faster to harvest (339 days), had a higher average bunch weight (9.5 kg/bunch) and were consequently more productive (10.6 tonnes/hectare/cycle) compared to the other treatments.

Extracellular release of a heterologous phytase from roots of transgenic plants: does manipulation of rhizosphere biochemistry impact microbial community structure?

To maintain the sustainability of agriculture, it is imperative that the reliance of crops on inorganic phosphorus (P) fertilizers is reduced. One approach is to improve the ability of crop plants to acquire P from organic sources. Transgenic plants that produce microbial phytases have been suggested as a possible means to achieve this goal. However, neither the impact of heterologous expression of phytase on the ecology of microorganisms in the rhizosphere nor the impact of rhizosphere microorganisms on the efficacy of phytases in the rhizosphere of transgenic plants has been tested. In this paper, we demonstrate that the presence of rhizosphere microorganisms reduced the dependence of plants oil extracellular secretion of phytase from roots when grown in a P-deficient soil. Despite this, the expression of phytase in transgenic plants had little or no impact on the microbial community structure as compared with control plant lines, whereas soil treatments, such as the addition of inorganic P, had large effects. The results demonstrate that soil microorganisms are explicitly involved in the availability of P to plants and that the microbial community in the rhizosphere appears to be resistant to the impacts of single-gene changes in plants designed to alter rhizosphere biochemistry and nutrient cycling.

Effect of cattle urine addition on the surface emissions and subsurface concentrations of greenhouse gases in a UK peat grassland

Grazing systems represent a substantial percentage of the global anthropogenic flux of nitrous oxide (N2O) as a result of nitrogen addition to the soil. The pool of available carbon that is added to the soil from livestock excreta also provides substrate for the production of carbon dioxide (CO2) and methane (CH4) by soil microorganisms. A study into the production and emission of CO2, CH4 and N2O from cattle urine amended pasture was carried out on the Somerset Levels and Moors, UK over a three-month period. Urine-amended plots (50 g N m−2) were compared to control plots to which only water (12 mg N m−2) was applied. CO2 emission peaked at 5200 mg CO2 m−2 d−1 directly after application. CH4 flux decreased to −2000 μg CH4 m−2 d−1 two days after application; however, net CH4 flux was positive from urine treated plots and negative from control plots. N2O emission peaked at 88 mg N2O m−2 d−1 12 days after application. Subsurface CH4 and N2O concentrations were higher in the urine treated plots than the controls. There was no effect of treatment on subsurface CO2 concentrations. Subsurface N2O peaked at 500 ppm 12 days after and 1200 ppm 56 days after application. Subsurface NO3− concentration peaked at approximately 300 mg N kg dry soil−1 12 days after application. Results indicate that denitrification is the key driver for N2O release in peatlands and that this production is strongly related to rainfall events and water-table movement. N2O production at depth continued long after emissions were detected at the surface. Further understanding of the interaction between subsurface gas concentrations, surface emissions and soil hydrological conditions is required to successfully predict greenhouse gas production and emission.

Influência da geometria e umidade de colunas de solo na biodegradação de filmes de PCL

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Atividade microbiana em solos, influenciada por resíduos de algodão e torta de mamona

Microbial activity constitutes a good indicator of soil quality, and is influenced by the addition of carbon in the system serving as a substrate for microorganisms that increase their activity and release of CO2, comprising the edaphic respiration of the soil. The objective of this study was to evaluate the microbial activity in different soil types with the addition of cake press of castor bean and cotton textile residue. The study was conducted in a greenhouse at the headquarters of Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Cotton in randomized block design in 4 x 3 factorial arrangement with four replications. At predetermined intervals of 4 days, the containers were opened and the solution of NaOH titrated with HCl 2N in the presence of acid/base indicator phenolphthalein. After reading, the same amount of NaOH was added and the containers were closed again. The difference between the amounts of acid needed to neutralize the sodium hydroxide in a control container and the treatments was equivalent to the amount of carbon dioxide produced by soil microorganisms. It was found that the residues influenced the microbial activity in different soil types, especially in the initial determinations, presenting themselves as good sources for mineralization and nutrient supply, the castor bean proportionating higher cumulative release of CO2 by microorganisms.

Avaliação de diferentes metodologias para extração de DNA de solo sob cultivo de cana-de-açúcar

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Aspectos microbiológicos e químicos em solo submetido à solarização

Pós-graduação em Agronomia (Proteção de Plantas) - FCA

Associação micorrízica arbuscular com genótipos de milho

Pós-graduação em Agronomia - FEIS