Ancient Dispersal of the Human Fungal Pathogen Cryptococcus gattii from the Amazon Rainforest

Over the past two decades, several fungal outbreaks have occurred, including the high-profile 'Vancouver Island' and 'Pacific Northwest' outbreaks, caused by Cryptococcus gattii, which has affected hundreds of otherwise healthy humans and animals. Over the same time period, C. gattii was the cause of several additional case clusters at localities outside of the tropical and subtropical climate zones where the species normally occurs. In every case, the causative agent belongs to a previously rare genotype of C. gattii called AFLP6/VGII, but the origin of the outbreak clades remains enigmatic. Here we used phylogenetic and recombination analyses, based on AFLP and multiple MLST datasets, and coalescence gene genealogy to demonstrate that these outbreaks have arisen from a highly-recombining C. gattii population in the native rainforest of Northern Brazil. Thus the modern virulent C. gattii AFLP6/VGII outbreak lineages derived from mating events in South America and then dispersed to temperate regions where they cause serious infections in humans and animals.

Quantitative descriptors and their direct and indirect effects on corn yield

The objective of this study was to evaluate the direct and indirect effects of ten quantitative descriptors of agronomic importance in productivity of 25 maize hybrids and their respective influences of heritability. The experiment in randomized blocks with four replications, was conducted in 2010/2011 crop in a soil under humid subtropical climate. The quantitative descriptors were: ear length, ear diameter, cob diameter, number of rows of grains, stem diameter, plant height, ear height, weight of 100 grains, grain weight per ear and number of grains per ear. The grain weight per ear and ear length showed high correlation with grain yield, and the descriptors with the highest potential for selecting superior genotypes and showing high heritability.

Influence of rootstocks and pruning times on yield and on nutrient content and extraction in 'Niagara Rosada' grapevine

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Análise estrutural em relictos de cerrado no parque estadual do Guartelá, município de Tibagi, estado do Paraná, Brasil

This study was accomplished in existing Cerrado's relicts at State Park Guartelá, Tibagi, PR (24°39'10S and 50°15'25W), which represent one of the last extreme-meridional remanescents of this type of formation. Fifty plots with dimensions of 5x5m were allocated for phyto-sociological analysis, including in the sample individuals with height ≥ 1 m, divided into two samples to evaluate the following strata: a) upper-plants with DAS ≥ 3 cm, and b) intermediate - plants with DAS <3cm. Moreover, in each plot, there were established sub-plots with dimensions of 1x1m for sampling the lower stratum, comprised by individuals with height <1m and >10cm. The complete survey found 1340 individuals distributed in 28 families, 66 genera and 115 species. The diversity index was higher for the mean component (H'=3.30), followed by the superior component (H'=3.09) and the inferior (H'=2.91). The frequent occurrence of bushes is a remarkable characteristic of the physiognomy of the areas inside the park and 82 % of the populations studied are distributed in aggregated standard. Because it is a marginal region of occurrence of cerrado vegetation, now under the influence of a subtropical climate, more humid and cold, compared to the core area of this biome, it is noted that these areas are characterized by a decrease in stature, richness and diversity of its flora. Nevertheless, they preserve typical species of the Brazilian Savannah; but, due to their distribution in relicts and been, in part, devastated, some are included in the red list of endangered plants in Parana state, which evidences the importance of conservation and management of these areas.

Land use and thermal comfort in the county of Ourinhos, SP

This study aims to analyze the thermal comfort in urban areas for different land uses. The ENVImet microclimatic model has been used for urban boundary layer simulation, providing the following thermal comfort indexes: PMV (Predicted Mean Vote) and PPD (Predicted Percentage of Dissatisfaction). The chosen area covers the central area in the city of Ourinhos, located in southeastern Brazilian city, with subtropical climate. Four simulations were accomplished: an area with real buildings and vegetation on site, a “grassy” area where buildings have been replaced by grass in the central area, another grassy area, known as “grass/tree”, with additional trees in, and a final area called “Park” also grassy, where trees were added all over the area. The structures which showed thermal comfort within the ISO 7730 standards were the grassy area with no trees at 9 a.m., and a paved area, as well as the park area at 3 p.m. Other situations have presented values of PMV and PPD off the limits required by the rules; they were very close to those values. The only point that presented a far cry from the comfort required was the spot in the asphalt at 9 a.m. The other situations showed PMV and PPD values not far from the limits of comfort. Only the point on the asphalt showed values far from the limit of comfort at 9 a.m.

Características físico-químicas de amidos de genótipos de bananeiras

Pós-graduação em Zootecnia - FMVZ

Rotação e técnicas de manejo de biomassa em sistema plantio direto no cultivo de soja e milho

Pós-graduação em Agronomia (Ciência do Solo) - FCAV

Whole-rock geochemistry and Sr-Nd isotopic composition of the pre-rift sequence of the Camamu Basin, northeastern Brazil

Whole-rock geochemistry, combined with Sr-Nd isotopic composition of pelitic sedimentary rocks, have been considered to be useful parameters to estimate not only their provenance but also to make inferences about their depositional environment as well as the weathering processes they have been through. The basal sedimentary units of the basins of the northeastern Brazilian continental margin, particularly those of the pre-rift sequence, have been subject of interest of studies based on chemical and isotopic data, since they lack fossil content to establish their age and, therefore, stratigraphic correlations are difficult. The major and trace element contents as well as Sr-Nd isotopic compositions of whole-rock shale samples from five outcrops attributed to the pre-rift supersequence of the Camamu Basin were analyzed with the purpose of characterizing and obtaining further information that would allow a better correlation between the sites studied. The geochemical data suggest that the rocks exposed in the studied outcrops are part of the same sedimentary unit and that they might be correlated to the Capianga Member of the Alianca Formation of the Reconcavo Basin, exposed to the north of the Camamu Basin. The chemical index of alteration (CIA) suggests conditions associated with a humid tropical/subtropical climate at the time of deposition. Nd isotopic compositions indicate provenance from the Paleoproterozoic rocks of the Sao Francisco craton. The results presented here, therefore, show that the combined use of chemical and isotopic analyses may be of great interest to characterize and correlate lithologically homogeneous clastic sedimentary sequences. (C) 2012 Elsevier Ltd. All rights reserved.

Methane emission from soil under long-term no-till cropping systems

Methane (CH4) emission from agricultural soils increases dramatically as a result of deleterious effect of soil disturbance and nitrogen fertilization on methanotrophic organisms; however, few studies have attempted to evaluate the potential of long-term conservation management systems to mitigate CH4 emissions in tropical and subtropical soils. This study aimed to evaluate the long-term effect (>19 years) of no-till grass- and legume-based cropping systems on annual soil CH4 fluxes in a formerly degraded Acrisol in Southern Brazil. Air sampling was carried out using static chambers and CH4 analysis by gas chromatography. Analysis of historical data set of the experiment evidenced a remarkable effect of high C- and N-input cropping systems on the improvement of biological, chemical, and physical characteristics of this no-tilled soil. Soil CH4 fluxes, which represent a net balance between consumption (-) and production (+) of CH4 in soil, varied from -40 +/- 2 to +62 +/- 78 mu g C m(-2) h(-1). Mean weighted contents of ammonium (NH4+-N) and dissolved organic carbon (DOC) in soil had a positive relationship with accumulated soil CH4 fluxes in the post-management period (r(2) = 0.95, p = 0.05), suggesting an additive effect of these nutrients in suppressing CH4 oxidation and stimulating methanogenesis, respectively, in legume-based cropping systems with high biomass input. Annual CH4 fluxes ranged from -50 +/- 610 to +994 +/- 105 g C ha(-1), which were inversely related to annual biomass-C input (r(2) = 0.99, p = 0.003), with the exception of the cropping system containing pigeon pea, a summer legume that had the highest biologically fixed N input (>300 kg ha(-1) yr(-1)). Our results evidenced a small effect of conservation management systems on decreasing CH4 emissions from soil, despite their significant effect restoring soil quality. We hypothesized that soil CH4 uptake strength has been off-set by an injurious effect of biologically fixed N in legume-based cropping systems on soil methanotrophic microbiota, and by the methanogenesis increase as a result of the O-2 depletion in niches of high biological activity in the surface layer of the no-tillage soil. (C) 2012 Elsevier B.V. All rights reserved.

Characterization of quaternary tufas in the Serra do Andre Lopes karst, southeastern Brazil

Active tufas in the form of waterfalls and dams occur along drainage channels in the Serra do Andre Lopes region (State of Sao Paulo, southeastern Brazil) and are associated with the karst system that developed on a dolomitic plateau with a superhumid subtropical climate. The predominance of autogenic waters enables the groundwater to become enriched in calcium carbonate, with low terrigenous sediment content. The tufas that were studied are composed of calcite and have high calcium contents and low magnesium contents. Eroded tufa beds that originate from changes in the position of fluvial channels or river flow rates also occur in this region. In the Sapatu deposit, phytohermal tufas with complex morphologies are arranged in levels constituting various temporally repeated sequences that were deposited between 10,570 and 4,972 cal years BP. In the Frias deposit, distal fluvial deposits of tufa are massive with a relatively greater quantity of terrigenous material and show evidence of dissolution and reprecipitation. The base of this deposit is composed of a cemented breccia dated at 25,390 years BP, which is younger than the overlying tufas ([42,000 years BP). In the two deposits, the levels of terrigenous sediments (quartz sand and lithic pebbles) and terrestrial gastropod shells are interpreted as phases of increased flow rate of rivers during intervals of higher rainfall.

Epatite E: ruolo del suino nella trasmissione dell'infezione all'uomo, studio di prevalenza in aree rurali della Bolivia

L’infezione da virus dell’ epatite E (HEV) nei suini e nell’uomo è stata segnalata in diversi Paesi. Nei suini, il virus causa infezioni asintomatiche, mentre nell’uomo è responsabile di epidemie di epatite ad andamento acuto nei Paesi a clima tropicale o subtropicale con condizioni igieniche scadenti, di casi sporadici in quelli sviluppati. HEV è stato isolato anche in diversi animali e l’analisi nucleotidica degli isolati virali di origine animale ha mostrato un elevato grado di omologia con i ceppi di HEV umani isolati nelle stesse aree geografiche, avvalorando l’ipotesi che l'infezione da HEV sia una zoonosi. In America del Sud HEV suino è stato isolato per la prima volta in suini argentini nel 2006, mentre solo dal 1998 esistono dati sull’ infezione da HEV nell’uomo in Bolivia. In questa indagine è stato eseguito uno studio di sieroprevalenza in due comunità rurali boliviane e i risultati sono stati confrontati con quelli dello studio di sieroprevalenza sopra menzionato condotto in altre zone rurali della Bolivia. Inoltre, mediante Nested RT-PCR, è stata verificata la presenza di HEV nella popolazione umana e suina. La sieroprevalenza per anticorpi IgG anti-HEV è risultata pari al 6,2%, molto simile a quella evidenziata nello studio precedente. La prevalenza maggiore (24%) si è osservata nei soggetti di età compresa tra 41 e 50 anni, confermando che l’ infezione da HEV è maggiore fra i giovani-adulti. La ricerca di anticorpi anti HEV di classe IgM eseguita su 52 sieri ha fornito 4 risultati positivi. Il genoma virale è stato identificato in uno dei 22 pool di feci umane e l'esame virologico di 30 campioni individuali fecali e 7 individuali di siero ha fornito rispettivamente risultati positivi in 4/30 e 1/7. La Nested RT-PCR eseguita sui 22 pool di feci suine ha dato esito positivo in 7 pool. L’analisi delle sequenze genomiche di tutti gli amplificati ha consentito di stabilire che gli isolati umani appartenevano allo stesso genotipo III di quelli suini e presentavano con questi una elevata omologia aminoacidica (92%).

Palinoestratigrafía, paleoambientes y cambios climáticos durante el Cretácico final y Paleógeno de la Cuenca del Grupo Salta, República Argentina

El objetivo principal de la presente tesis es la búsqueda de nuevos registros palinológicos para las formaciones del Grupo Salta, especialmente para aquellas que cuentan con poco o ningún registro de palinomorfos, tales como las Formaciones La Yesera, Las Curtiembres, Yacoraite y Olmedo. Los resultados palinológicos permitieron evaluar algunos aspectos geológicos como las relaciones estratigráficas, edad y ambientes de depósito. El muestreo se centró principalmente en el período comprendido entre el Neocomiano y Daniano, correspondiente a los subgrupos con mayor escasez de datos (Pirgua y Balbuena). 157 muestras palinológicas de la Cuenca del Grupo Salta y áreas relacionadas se trataron en laboratorio, 31 resultaron fértiles. Se brindan los primeros registros palinológicos de la Formación La Yesera (localidad valle de Pucará) que consisten en 35 especies. Las inferencias aleoambientales obtenidas a partir de la palinoflora apoyan las conclusiones que provienen de los datos sedimentológicos: presencia de un lago perenne al momento de la depositación del Miembro Brealito y sequías estacionales cuando se acumuló el Miembro Don Bartolo. La palinoflora indica un clima subtropical con presencia de cierta aridez. A partir de los rangos estratigráficos de algunas especies y de las dataciones radimétricas del Basalto de Isonza, se estima una edad entre el Albiano y el Cenomaniano. Para la Formación Las Curtiembres (Miembro Morales) se describen 19 especies provenientes de la quebrada de Palo Seco, que constituyen la primer asociación palinológica registrada. El predominio de Ephedraceae y Cheirolepidiaceae, junto a la escasa representación de pteridofitas, sugieren condiciones ambientales de aridez a semiaridez, en coincidencia con la sedimentología que indica que la sección superior del Miembro Morales es transicional con las capas rojas de la parte superior de la Formación Las Curtiembres. La asociación palinológica contiene representantes de amplia distribución espacial y temporal. Es relevante la presencia de Peninsulapollis gillii que indica una edad no mayor al Campaniano para la asociación estudiada. Sólo una muestra de la Formación Yacoraite en la localidad de Tres Cruces fue productiva en cuanto al contenido de palinomorfos. La asociación consta solamente de los géneros Leiosphaeridia y Pediastrum que se asocian a condiciones de agua dulce o mixtas. Para la Formación Olmedo se registran 34 especies de palinomorfos y 39 especies para la Formación Tunal (localidades de Garabatal y El Chorro respectivamente). Ambas formaciones comparten un 49 % de taxa. El marcado predominio de algas clorococales indica condiciones lacustres y un ambiente palustre se infiere por la presencia de Pandaniidites texus y Mtchedlishvilia saltenia. El elevado porcentaje de Verrustephanoporites simplex indica que la selva de ulmáceas, era la unidad fitogeográfica más ampliamente distribuida, comparable con la actual Selva de Transición de la Provincia de Yungas. La coincidencia de facies y contenido palinológico indicarían similares condiciones ambientales para las Formaciones Olmedo y Tunal. Mtchedlishvilia saltenia permiten circunscribir las Formaciones al Daniano. Los cambios climáticos acontecidos durante el desarrollo de la Cuenca del Grupo Salta quedaron evidenciados en la palinoflora. Durante el Cretácico Tardío, habrían prevalecido condiciones de aridez y a partir del Maastrichtiano, el clima se torna más húmedo. Las asociaciones del Daniano se caracterizan por una palinoflora de clima subtropical húmedo. Entre el Paleoceno Superior y hasta el Eoceno Inferior, continúa el registro de la flora de clima subtropical pero con una leve disminución en la humedad. Las especies Peninsulapollis gillii, Rhoipites sp. A, Rousea patagonica, Spinitricolpites jennerclarkei, Verrustephanoporites simplex y Azolla sp., pasan el límite Cretácio-Paleógeno registrándose en sedimentos pre- y post-danianos. Se requieren mayores estudios de detalle en aquellos niveles donde está contenido el límite para esclarecer los posibles cambios vegetacionales que hayan ocurrido.

Neogene palaeoclimate reconstructions in Anatolia (Turkey)

Neogene basins are widespread in Turkey and contain important lignite deposits. In this study, we reconstruct quantitatively the Late Oligocene-Miocene climate evolution in western and central Anatolia by applying the Coexistence Approach to the palynoflora. The obtained results are compared with the data derived from the published and ongoing studies in western and central Anatolia palynofloras by application of the Coexistence Approach. The Coexistence Approach results show that the sedimentation mainly developed on terrestrial environment under the warm subtropical climatic conditions and marine influence during the Chattian and Aquitanian period in western Anatolia (16.5-21.3°C of mean annual temperature (MAT) and 5.5-13.3°C of mean temperature of coldest month (CMT)). After the regression of the sea during the Burdigalian period, the vegetation developed under the terrestrial conditions, which had started in the Burdigalian time in western and central Anatolia and continued in the early-middle Serravallian period. Warm subtropical climate is suggested during the Chattian and Aquitanian period in western Anatolia and becomes cooler in subtropical conditions because of decreasing of the P/A-ratio during the latest Burdigalian-Langhian. The climate was subtropical in western and central Anatolia during the Early-Late Serravalian due to the increasing of the subtropical elements (17.2 to 20.8°C of MAT and 9.6 to13.1°C of CMT). Besides, decreasing of the CMT and MAT values in western and central Anatolia supports the latest Chattian-earliest Aquitanian warming and middle Miocene climatic optimum that is also globally observed. Warm temperate climatic conditions are observed in the Late Miocene. During the early-middle Tortonian, the values are 15.6 to 20.8°C for the MAT, 5.5 to 13.3°C for the CMT and 823 and 1520 mm for the mean annual precipitation (MAP). They had also dry seasons due to lower boundary of MAP lying at 823mm during the middle-Late Tortonian. The palaeotopography of central Anatolia was higher when compared to that of western Anatolia because dominance of the mountain forests was present during the Middle-Late Miocene in central Anatolia. This study provides the first quantitative model for Late Oligocene-Miocene palaeoclimatic evolution in western and central Anatolia.

Triennial skeletal stable oxygen isotope ratios of Diploria labyrinthiformis

The reconstruction of the climatic history during the past several hundred years requires a sufficient geographical coverage of combined climate proxy series. Especially in order to identify causal connections between the atmosphere and the ocean, inclusion of marine records into composite climate time series is of fundamental importance. We present two skeletal delta18O chronologies of coral skeletons of Diploria labyrinthiformis from Bermuda fore-reef sites covering periods in the nineteenth and twentieth centuries and compare them with instrumental temperature data. Both time series are demonstrated to display sea-surface temperature (SST) variability on inter-annual to decadal time scales. On the basis of a specific modern delta18O vs instrumental SST calibration we reconstruct a time series of SST anomalies between AD 1350 and 1630 covering periods during the Little Ice Age. The application of the coral delta18O vs temperature relationship leads to estimates of past SST variability which are comparable to the magnitude of modern variations. Parallel to delta18O chronologies we present time series of skeletal bulk density. Coral delta18O and skeletal density reveal a strong similarity during Little Ice Age, confirming the reliability of both proxy climate indicators. The past coral records, presented in this study, share features with a previously published climate proxy record from Bermuda and a composite time series of reconstructed Northern Hemisphere summer temperatures. The coral proxy data presented here represent a valuable contribution to elucidate northern Atlantic subtropical climate variation during the past several centuries.

Regional aspects of Miami crime fiction

This thesis argues that forces of literary regionalism and postmodern culture are behind the explosion of crime fiction being written in and about South Florida by a growing number of resident authors. Research included four methods of investigation: 1. A critical reading of many of the novels that make up the sub-genre. 2. A study of the theories of regionalism, postmodernism and the genre of the crime fiction. 3. Interviews with a number of the authors and a prominent Miami book seller. 4. Sociological studies of Miami in terms of historical events and their cultural significance. Today's South Florida crime fiction authors cast their narratives in the old genre of the detective novel where characters are delineated according to traditional definitions of good and evil. Evil characters threaten established order. What makes South Florida crime fiction different from traditional detective fiction is its interest in the exotic, postmodern culture and setting of South Florida. Like the region, the villains are exotic and the order that they threaten is postmodern. There is less of an interest in attributing a larger social meaning to the heroes. Rather, there is an ontological interest in the playing out of good against evil in an almost mythical setting that magnifies economic, environmental and racial issues. There is a unique cultural diversity of the city due to the geographical location of Miami in relationship to Latin America and the Caribbean, and the political forces at work in the region. South Florida's subtropical climate, fragile ecosystem, and elements of frontier life in a cosmopolitan city work to support Miami crime fiction. The setting personifies the unpredictability and pastiche of a postmodern world and may call for a new definition for literature that relies on non-traditional regional characteristics.