Deep barcode divergence in Brazilian freshwater fishes: the case of the Sao Francisco River basin

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Carbon sources and trophic position of the main species of fishes of Baía River, Paraná River floodplain, Brazil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Sport fishing in Cachoeira de Emas in Mogi-Guaçu River, State of São Paulo, Brazil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Sucessão da comunidade de algas perifíticas em reservatório oligotrófico tropical (São Paulo, Brasil): comparação entre período seco e chuvoso

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Nuclear DNA content determination in Characiformes fish (Teleostei, Ostariophysi) from the Neotropical region

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Characterization and genome organization of a repetitive element associated with the nucleolus organizer region in leporinuselongatus (anostomidae: Characiformes)

Chromosome mapping and studies of the genomic organization of repetitive DNA sequences provide valuable insights that enhance our evolutionary and structural understanding of these sequences, as well as identifying chromosomal rearrangements and sex determination. This study investigated the occurrence and organization of repetitive DNA sequences in Leporinus elongatus using restriction enzyme digestion and the mapping of sequences by chromosomal fluorescence in situ hybridization (FISH). A 378-bp fragment with a 54.2% GC content was isolated after digestion with the SmaI restriction enzyme. BLASTN search found no similarity with previously described sequences, so this repetitive sequence was named LeSmaI. FISH experiments were conducted using L. elongatus and other Anostomidae species, i.e. L. macrocephalus,L. obtusidens, L. striatus, L. lacustris, L. friderici, Schizodon borellii, S. isognathus, and Abramites hypselonotus which detected signals that were unique to male and female L. elongatus individuals. Double-FISH using LeSmaI and 18S rDNA showed that LeSmaI was located in a nucleolus organizer region (NOR) in the male and female metaphases of L. elongatus. This report also discusses the role of repetitive DNA associated with NORs in the diversification of Anostomidae species karyotypes. Copyright © 2012 S. Karger AG, Basel.

Chromosome mapping of repetitive sequences in Anostomidae species: Implications for genomic and sex chromosome evolution

Background: Members of the Anostomidae family provide an interesting model system for the study of the influence of repetitive elements on genome composition, mainly because they possess numerous heterochromatic segments and a peculiar system of female heterogamety that is restricted to a few species of the Leporinus genus. The aim of this study was to isolate and identify important new repetitive DNA elements in Anostomidae through restriction enzyme digestion, followed by cloning, characterisation and chromosome mapping of this fragment. To identify repetitive elements in other Leporinus species and expand on studies of repetitive elements in Anostomidae, hybridisation experiments were also performed using previously described probes of LeSpeI repetitive elements. Results: The 628-base pair (bp) LeSpeII fragment was hybridised to metaphase cells of L. elongatus individuals as well as those of L. macrocephalus, L. obtusidens, L. striatus, L. lacustris, L. friderici, Schizodon borellii and S. isognathus. In L. elongatus, both male and female cells contained small clusters of LeSpeII repetitive elements dispersed on all of the chromosomes, with enrichment near most of the terminal portions of the chromosomes. In the female sex chromosomes of L. elongatus (Z2,Z2/W1W 2), however, this repeated element was absent. In the remaining species, a dispersed pattern of hybridisation was observed on all chromosomes irrespective of whether or not they were sex chromosomes. The repetitive element LeSpeI produced positive hybridisations signals only in L. elongatus, L. macrocephalus and L. obtusidens, i.e., species with differentiated sex chromosomes. In the remaining species, the LeSpeI element did not produce hybridisation signals. Conclusions: Results are discussed in terms of the effects of repetitive sequences on the differentiation of the Anostomidae genome, especially with respect to sex chromosome evolution. LeSpeII showed hybridisation patterns typical of Long Interspersed Elements (LINEs). The differential distribution of this element may be linked to sex chromosome differentiation in L. elongatus species. The relationship between sex chromosome specificity and the LeSpeI element is confirmed in the species L. elongatus, L. macrocephalus and L. obtusidens. © 2012 da Silva et al.; licensee BioMed Central Ltd.

Relações entre acúmulo de metais em tecido muscular de peixes com diferentes hábitos alimentares coletados na Bacia Hidrográfica do Turvo/Grande

Pós-graduação em Química - IBILCE

Estudo da organização estrutural de elementos repetitivos isolados do genoma de Leporinus elongatus em diferentes espécies da família Anostomidae (Teleostei, Characiformes)

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Descrição larval de caranguejos brachyura (Crustacea: Decapoda) da região Amazônica, obtido em laboratório

Larvas do caranguejo da lama Panopeus lacustris Desbonne, 1867 foram cultivadas em laboratório a partir de fêmeas ovígeras coletadas na área estuarina do Rio Caeté na região Amazônica. O desenvolvimento completo desta espécie consistiu em 4 de zoea e um megalopa, onde cada estágio foi descrito e ilustrado em detalhes. Os resultados foram comparados com os de outros estudos anteriores sobre o desenvolvimento larval das espécies pertencentes ao gênero Panopeus e brevemente discutidos. Além da descrição das larvas do desenvolvimento completo de P. lacustris, foi descrita e ilustrada a primeira fase de zoea de treze espécies de caranguejos braquiúros coletados no mesmo estuário: P. lacustris, P. americanus Saussure, 1857, Eurytium limosum (Say, 1818), Sesarma curacaoense De Man, 1892, Sesarma rectum Randall, 1840, Armases rubripes (Rathbun, 1897), Aratus pisonii (H. Milne Edwards, 1837), Ocypode quadrata (Fabricius, 1787), Uca rapax (Smith, 1870), Uca maracoani (Latreille, 1802), Uca thayeri Rathbun, 1900, Ucides cordatus (Linnaeus, 1763) e Pachygrapsus gracilis (Saussure, 1858). Apenas a zoea I de P. lacustris não foi descrito novamente. As características morfológicas dessas espécies são comparadas com as descrições originais. Para facilitar o estudo de material coletado no plâncton, foi desenvolvida uma chave para identificação das espécies descritas neste estudo.

Identificação e caracterização de elementos retrotransponíveis da família Rex do genoma de espécies do genêro Leporinus SPIX, 1829 (Teleostei: Anostomidae)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Molecular epidemiology of Flavobacterium psychrophilum from Swiss fish farms

Bacterial cold water disease (BCWD) and rainbow trout fry syndrome (RTFS) caused by Flavobacterium psychrophilum are 2 of the major diseases causing high fish mortality in salmonid fish farms. The molecular epidemiology of F. psychrophilum is still largely unknown. Multilocus sequence typing (MLST) has been previously used for this pathogen and underscored a correlation between clonal complexes and host fish species. Here we used MLST to study the relationships among 112 F. psychrophilum isolates from rainbow trout Oncorhynchus mykiss and brown trout Salmo trutta fario and S. t. lacustris in Swiss fish farms between 1993 and 2012. The isolates belonged to 27 different sequence types (STs). Most of the Swiss outbreaks were associated with strains belonging to clonal complexes CC-ST2 and CC-ST90, found in both rainbow trout and brown trout and represented by several STs. Eight ST singletons could not be connected to any known clonal complex. Already reported from other parts of Europe and North America, CC-ST2 was the most frequent clonal complex observed, and it caused the majority of outbreaks in Switzerland, with CC-ST90 being the second most important type. In the tightly interconnected Swiss fish farms, no association between clonal complex and host fish was detected, but a temporal evolution of the frequency of some STs was observed. The occurrence of sporadic STs suggests high F. psychrophilum diversity and may reflect the presence of different sequence types in the environment.

Pollen and macroremains from sediment core Aschenhütte

The Upper Pleistocene sediments of the Aschenhütte sink-hole (west of Herzberg am Harz, Lower Saxony) enable one to make interesting correlations between palynological and geological results. The sequence is composed of limnic-telmatic deposits (Eemain to Lower Weichselian) and loess with paleosoils (Weichselian). Sedimentation started during the hornbeam-dominated phase of the Eemian interglacial period and continued throughout the Eemian, the Weichselian Brörup interstadial (sensu Andersen) and parts of the preceding and the following stadial phases, the Herning and the Rederstall stadials. As opposed to most of the known Eemian sites spruce was a major tree species during the hornbeam-dominated phase of the Eemian. The vegetational development during the interstadial phase does not show a period of climatic deterioration as is the case for the Brörup interstadial when considering regions with a more demanding vegetation or regions close to the natural boundaries of the tree species concerned. Pollen or seeds of Bruckenthalia and Picea omoricoides have not been found in the Aschenhütte cores. The limnic-telmatic sediments interlock with loess-paleosoils (Eemian soil and Lower Weichselian bleaching soils) at the lake shore. They are overlaid by loess paleosoils of the Stillfried-B interstadial (Hattorf soil and Lohne soil). Lake level fluctuations were determined by means of the facies distribution and isochrones as defined by pollen analysis. A relatively high stand of the lake level existed after the end of the Eemian interglacial and during the Brörup interstadial periods. In the course of the Herning stadial period the water level dropped, whereas during the Rederstall stadial phase the lake basin was covered by sediments and therefore dried up.

Pollen record from Blankensee, Germany

Lake Blankensee is filled with 14 m of late- and postglacial deposits, Lake Siethener See with 22,5 m. The lacustrine sedimentation begins in Lake Siethener See in the middle of the Alleröd with annual lamination which partly continues in the Younger Dryas. A 2 cm thick layer of the Laacher See tephra was found in both lakes, the Saksunarvatn tephra only in Lake Siethener See where the cool Rammelbeek-phase (Preboreal) could be shown. The youngest part of the sediment profiles is suspended drifting mud. Masses of Pediastrum (algae) indicate an increasing shoaling of Lake Blankensee after the Subboreal.