The Design and Synthesis of Transition Metal Complexes Supported by Non-innocent Ligand Scaffolds for Small Molecule Activation

This dissertation focuses on the incorporation of non-innocent or multifunctional moieties into different ligand scaffolds to support one or multiple metal centers in close proximity. Chapter 2 focuses on the initial efforts to synthesize hetero- or homometallic tri- or dinuclear metal carbonyl complexes supported by para-terphenyl diphosphine ligands. A series of [M₂M’(CO)₄]-type clusters (M = Ni, Pd; M’ = Fe, Co) could be accessed and used to relate the metal composition to the properties of the complexes. During these studies it was also found that non-innocent behavior was observed in dinuclear Fe complexes that result from changes in oxidation state of the cluster. These studies led to efforts to rationally incorporate central arene moieties capable managing both protons and electrons during small molecule activation.

Chapter 3 discusses the synthesis of metal complexes supported by a novel para-terphenyl diphosphine ligand containing a non-innocent 1,4-hydroquinone moiety as the central arene. A Pd⁰-hydroquinone complex was found to mediate the activation of a variety of small molecules to form the corresponding Pd⁰-quinone complexes in a formal two proton ⁄ two electron transformation. Mechanistic investigations of dioxygen activation revealed a metal-first activation process followed by subsequent proton and electron transfer from the ligand. These studies revealed the capacity of the central arene substituent to serve as a reservoir for a formal equivalent of dihydrogen, although the stability of the M-quinone compounds prevented access to the PdII-quinone oxidation state, thus hindering of small molecule transformations requiring more than two electrons per equivalent of metal complex.

Chapter 4 discusses the synthesis of metal complexes supported by a ligand containing a 3,5-substituted pyridine moiety as the linker separating the phenylene phosphine donors. Nickel and palladium complexes supported by this ligand were found to tolerate a wide variety of pyridine nitrogen-coordinated electrophiles which were found to alter central pyridine electronics, and therefore metal-pyridine π-system interactions, substantially. Furthermore, nickel complexes supported by this ligand were found to activate H-B and H-Si bonds and formally hydroborate and hydrosilylate the central pyridine ring. These systems highlight the potential use of pyridine π-system-coordinated metal complexes to reversibly store reducing equivalents within the ligand framework in a manner akin to the previously discussed 1,4-hydroquinone diphosphine ligand scaffold.

Chapter 5 departs from the phosphine-based chemistry and instead focuses on the incorporation of hydrogen bonding networks into the secondary coordination sphere of [Fe₄(μ₄-O)]-type clusters supported by various pyrazolate ligands. The aim of this project is to stabilize reactive oxygenic species, such as oxos, to study their spectroscopy and reactivity in the context of complicated multimetallic clusters. Herein is reported this synthesis and electrochemical and Mössbauer characterization of a series of chloride clusters have been synthesized using parent pyrazolate and a 3-aminophenyl substituted pyrazolate ligand. Efforts to rationally access hydroxo and oxo clusters from these chloride precursors represents ongoing work that will continue in the group.

Appendix A discusses attempts to access [Fe₃Ni]-type clusters as models of the enzymatic active site of [NiFe] carbon monoxide dehydrogenase. Efforts to construct tetranuclear clusters with an interstitial sulfide proved unsuccessful, although a (μ₃-S) ligand could be installed through non-oxidative routes into triiron clusters. While [Fe₃Ni(μ₄-O)]-type clusters could be assembled, accessing an open heterobimetallic edge site proved challenging, thus prohibiting efforts to study chemical transformations, such as hydroxide attack onto carbon monoxide or carbon dioxide coordination, relevant to the native enzyme. Appendix B discusses the attempts to synthesize models of the full H-cluster of [FeFe]-hydrogenase using a bioinorganic approach. A synthetic peptide containing three cysteine donors was successfully synthesized and found to chelate a preformed synthetic [Fe₄S₄] cluster. However, efforts to incorporate the diiron subsite model complex proved challenging as the planned thioester exchange reaction was found to non-selectively acetylate the peptide backbone, thus preventing the construction of the full six-iron cluster.

RARRES3 suppresses breast cancer lung metastasis by regulating adhesion and differentiation

In estrogen receptor-negative breast cancer patients, metastatic relapse usually occurs in the lung and is responsible for the fatal outcome of the disease. Thus, a better understanding of the biology of metastasis is needed. In particular, biomarkers to identify patients that are at risk of lung metastasis could open the avenue for new therapeutic opportunities. Here we characterize the biological activity of RARRES3, a new metastasis suppressor gene whose reduced expression in the primary breast tumors identifies a subgroup of patients more likely to develop lung metastasis. We show that RARRES3 downregulation engages metastasis-initiating capabilities by facilitating adhesion of the tumor cells to the lung parenchyma. In addition, impaired tumor cell differentiation due to the loss of RARRES3 phospholipase A1/A2 activity also contributes to lung metastasis. Our results establish RARRES3 downregulation as a potential biomarker to identify patients at high risk of lung metastasis who might benefit from a differentiation treatment in the adjuvant programme.

FTY720 attenuates excitotoxicity and neuroinflammation

Background: FTY720 (fingolimod, Gilenya(TM)), a structural analog of sphingosine-1-phosphate (S1P), is the first oral drug approved for treatment the relapsing-remitting form of multiple sclerosis (MS), and its efficacy has been related to induced lymphopenia and consequent immunosuppression via modulation of S1P(1) receptors (S1P(1)R). However, due to its lipophilic nature, FTY720 crosses the blood brain barrier (BBB) and could act directly on neural cells. In this study, we investigated the effectiveness of FTY720 as a neuroprotective agent using in vitro and in vivo models of excitotoxic neuronal death and examined if FTY720 exerts a direct action on neurons, or/and an indirect modulation of inflammation-mediated neurodegeneration as a possible mechanism of neuroprotection. Methods: Primary neuronal and organotypic cortical cultures were treated with N-methyl-D-aspartic acid (NMDA) to induce excitotoxic cell death (measured by lactate dehydrogenase (LDH) assay or propidium iodide uptake, respectively). The effects of FTY720 treatment (10, 100 and 1,000 nM) on neuronal survival were examined. As an in vivo model of neuronal death and inflammation, we used intracerebroventricular (icv) administration of kainic acid (KA; 0.5 mu g/2 mu l) in Sprague-Dawley rats. FTY720 was applied icv (1 mu g/2 mu l), together with KA, plus intraperitoneally (ip; 1 mg/kg) 24 h before, and daily, until sacrifice 3 days after icv. Rats were evaluated for neurological score, neuronal loss in CA3 hippocampal region and activation of microglia at the lesion site. In addition, we tested FTY720 as a modulator of microglia responses using microglial cell cultures activated with lipopolysaccharide (LPS) and its effects in stress signalling pathways using western blotting for p38 and JNK1/2 mitogen-activated protein kinases (MAPKs). Results: FTY720 was able to reduce excitotoxic neuronal death in vitro. Moreover, in vivo repeated FTY720 administration attenuated KA-induced neurodegeneration and microgliosis at the CA3 lesion site. Furthermore, FTY720 negatively modulates p38 MAPK in LPS-activated microglia, whereas it had no effect on JNK1/2 activation. Conclusions: These data support a role for FTY720 as a neuroprotective agent against excitotoxin-induced neuronal death and as a negative modulator of neuroinflammation by targeting the p38 MAPK stress signalling pathway in microglia.

Lymphangioleiomyomatosis Biomarkers Linked to Lung Metastatic Potential and Cell Stemness

Lymphangioleiomyomatosis (LAM) is a rare lung-metastasizing neoplasm caused by the proliferation of smooth muscle-like cells that commonly carry loss-of-function mutations in either the tuberous sclerosis complex 1 or 2 (TSC1 or TSC2) genes. While allosteric inhibition of the mechanistic target of rapamycin (mTOR) has shown substantial clinical benefit, complementary therapies are required to improve response and/or to treat specific patients. However, there is a lack of LAM biomarkers that could potentially be used to monitor the disease and to develop other targeted therapies. We hypothesized that the mediators of cancer metastasis to lung, particularly in breast cancer, also play a relevant role in LAM. Analyses across independent breast cancer datasets revealed associations between low TSC1/2 expression, altered mTOR complex 1 (mTORC1) pathway signaling, and metastasis to lung. Subsequently, immunohistochemical analyses of 23 LAM lesions revealed positivity in all cases for the lung metastasis mediators fascin 1 (FSCN1) and inhibitor of DNA binding 1 (ID1). Moreover, assessment of breast cancer stem or luminal progenitor cell biomarkers showed positivity in most LAM tissue for the aldehyde dehydrogenase 1 (ALDH1), integrin-beta 3 (ITGB3/CD61), and/or the sex-determining region Y-box 9 (SOX9) proteins. The immunohistochemical analyses also provided evidence of heterogeneity between and within LAM cases. The analysis of Tsc2-deficient cells revealed relative over-expression of FSCN1 and ID1; however, Tsc2-deficient cells did not show higher sensitivity to ID1-based cancer inhibitors. Collectively, the results of this study reveal novel LAM biomarkers linked to breast cancer metastasis to lung and to cell stemness, which in turn might guide the assessment of additional or complementary therapeutic opportunities for LAM.

A key to selected rockfishes (Sebastes spp.) based on mitochondrial DNA restriction fragment analysis

Larval and juvenile rockfishes (Sebastes spp.) are difficult to identify using morphological characters. We developed a key based on sizes of restriction endonuclease fragments of the NADH dehydrogenase-3 and -4 (ND3/ND4) and 12S and 16S ribosomal RNA (12S/16S) mitochondrial regions. The key makes use of variation in the ND3/ND4 region. Restriction endonuclease Dde I variation can corroborate identifications, as can 12S/16S variation. The key, based on 71 species, includes most North American taxa, several Asian species, and Sebastolobus alascanus and Helicolenus hilgendorfi that are closely related to rockfishes. Fifty-eight of 71 rockfish species in our database can be distinguished unequivocally, using one to five restriction enzymes; identities of the remaining species are narrowed to small groups: 1) S. polyspinis, S. crameri, and S. ciliatus or variabilis (the two species could not be distinguished and were considered as a single species) ; 2) S. chlorostictus, S. eos, and S. rosenblatti; 3) S. entomelas and S. mystinus; 4)S. emphaeus, S. variegatus, and S. wilsoni; and 5) S. carnatus and S. chrysomelas.

Hemodinâmica cardíaca e o metabolismo energético mitocondrial de camundongos adultos hiperalimentados na lactação

O desequilíbrio nutricional no início da vida leva ao desenvolvimento da obesidade, diabetes e doenças cardiovasculares na idade adulta. Este estudo teve como objetivo analisar os efeitos a longo prazo da hiperalimentação na lactação por meio do modelo de redução da ninhada na hemodinâmica e bioenergética cardíaca. Vinte e quatro camundongos machos Swiss adultos foram divididos em dois grupos (controle e hiperalimentado) submetidos a duas condições (linha de base e isquemia/reperfusão) formando quatro grupos no total: grupo controle linha de base (GCLB), grupo controle isquemia/reperfusão (GCIR), grupo hiperalimentado linha de base (GHLB) e o grupo hiperalimentado isquemia/reperfusão (GHIR), todos com seis camundongos/grupo. As alterações cardíacas foram analisadas por meio da hemodinâmica cardíaca, da respiração mitocondrial e da biologia molecular. Os parâmetros hemodinâmicos analisados foram a velocidade de contração (Max dP/dt), a velocidade de relaxamento (Min dP/dt), o tempo de relaxamento cardíaco isovolumétrico (Tau) e os batimentos por minuto (BPM). A respiração mitocondrial foi avaliada por meio da razão do controle respiratório (RCR) na oxidação de carboidratos e ácidos gordos, e finalmente, a biologia molecular, através de proteínas-chave como a proteína quinase B (AKT), a proteína quinase ativada por adenosina monofosfato (AMPK), a carnitina palmitoil transferase 1 (CPT-1), a proteína desacopladora 2 (UCP2), o 4-hidroxinonenal (4-HNE) e a gliceraldeído-3-fosfato desidrogenase (GAPDH). Os camundongos do GH desenvolveram maior peso corporal (30,95%, P<0,001), gordura epididimal (68,64%, P<0,001), gordura retroperitoneal (109,38%, P<0,01) e glicemia de jejum (19,52%, P<0,05) comparados aos do GC. Os parâmetros Max dP/dt e BPM apresentaram diminuição no GHIR quando comparado ao GHLB (P<0,001 e P<0,05). O parâmetro Min dP/dt apresentou-se reduzido no GCIR e GHIR quando comparado aos grupos GCLB e GCLB (P<0,05; P<0,0001 respectivamente). Camundongos do GHIR apresentaram redução do Tau quando comparado aos grupos GCIR e GHLB (P<0,0001). Estes desequilíbrios na hemodinâmica cardíaca foram associados a função mitocondrial, uma vez que, o GHLB apresenta a RCR reduzida para oxidação de ácidos graxos e carboidratos (P<0,05 e P<0,01, respectivamente) e o GHIR apenas na oxidação dos ácidos graxos (P<0,01). Além disso, o GHIR apresentou diversas alterações nas proteínas-chave do metabolismo energético cardíaco, como diminuição do conteúdo de AKT (P<0,05) e aumento do conteúdo de CPT-1 (P<0,05), 4-HNE (P<0,05) e GAPDH (P<0,05) quando comparado ao CGIR. Finalmente, a expressão do mRNA para CPT1, GAPDH e UCP2 foi aumentada no GHIR quando comparado aos GCIR (P<0,05) e GHLB (P<0,05). A expressão de mRNA para UCP2 e CPT-1 foi reduzida no GCIR quando comparado ao GCLB (P<0,01 e P<0,05, respectivamente). O estudo apresenta resultados consistentes, demonstrando efeitos deletérios sobre o metabolismo cardíaco adulto resultante de alterações nutricionais durante a lactação.

Avaliação do custo-efetividade da incorporação do Espectômetro de Massa em Tandem no Programa Nacional de Triagem Neonatal no Brasil para diagnóstico da Fenilcetonúria e MCAD.

A Espectrometria de Massa em Tandem (MS/MS) é mundialmente considerada padrão ouro para a Triagem Neonatal (TN) de Erros Inatos do Metabolismo (IEM). Além de apresentar melhor sensibilidade e especificidade possibilita rastrear uma vasta gama de IEM usando um único teste. Atualmente o Programa Nacional de Triagem Neonatal (PNTN) rastreia cinco doenças (Fenilcetonúria, Hipotiroidismo Congênito, Fibrose Cística, Hemoglobinopatias e Deficiência da Biotinidase). Uma das metas do PNTN é o aprimoramento e a incorporação de novas doenças e/ou tecnologias. Com a recente recomendação da CONITEC (Comissão Nacional de Incorporação de Tecnologias) para aquisição do MS/MS para diagnóstico de doenças raras, vislumbra-se o incremento desta tecnologia para ampliação de doenças triadas, melhora da qualidade do teste diagnóstico, corroborando para melhorar qualidade de vida das crianças acometidas pelos EIM. Este trabalho teve como objetivo realizar uma análise de custo efetividade, para incorporação da tecnologia de tandem MS/MS na triagem neonatal, sob a perspectiva do SUS. Desta maneira buscou-se comparar diferentes cenários da TN com a tecnologia atualmente utilizada (Fluorimetria) somente para Fenilcetonúria (PKU), e com MS/MS para rastreio da PKU e da Deficiência de Cadeia Média Acyl-Coenzima Desidrogenase (MCAD). Para tanto construiu-se um modelo matemático de decisão baseados em cadeias de Markov que simulou a TN da PKU e da MCAD, bem como a história natural da MCAD. Foi acompanhada uma coorte hipotética de cem mil recém-nascidos. O horizonte temporal adotado foi a expectativa de vida da população brasileira de 78 anos de acordo com IBGE. Utilizou-se uma taxa de desconto de 5% para os custos e consequências clínicas para ambos os cenários propostos. Quando incorporado o MS/MS para triagem da PKU os ganhos em saúde continuaram os mesmos, pois o desempenho do MS/MS e da Fluorimetria foram praticamente iguais (efetividade), porém o custo incremental foi quatro vezes maior para a mesma efetividade, o que torna o MS/MS somente para PKU não custo efetiva (dominada). No entanto, quando analisado o cenário do MS/MS para triagem da PKU e da MCAD o custo incremental do MS/MS no PNTN foi menor por causa da economia feita uma vez que é possível realizar ambos os testes no mesmo o teste do pezinho atual.

水母雪莲类黄酮次生代谢分子调控研究—cDNA 文库构建、关键酶及Myb 转录因子基因的克隆及其功能的初步鉴定

水母雪莲（Saussurea medusa Maxim）为名贵珍稀中药材，其主要药用成分为类黄酮，尤其是3-脱氧类黄酮。目前关于雪莲的研究主要集中在采用细胞培养生产类黄酮等方面，但对于雪莲类黄酮生物合成的分子机制了解甚少，极大限制了这一珍贵资源的利用。本研究采用水母雪莲红色系愈伤组织及悬浮细胞为材料，构建cDNA文库，从中克隆水母雪莲类黄酮次生代谢中的相关基因并对这些基因进行了深入的生物信息学分析、转基因研究初步确定其功能，以期了解雪莲类黄酮次生代谢的分子机制，为提高类黄酮的合成奠定基础。主要结果如下： 1. 成功地构建了水母雪莲红色系愈伤组织与悬浮细胞cDNA文库，原始文库滴度达到4×106pfu/ml，扩增文库滴度接近1011 pfu/ml，重组率达98%。PCR检测插入片段，均在0.5kb到3kb之间，1kb以上占62%。从文库中检测到了chs、dfr及Myb转录因子SmP，文库覆盖度达到要求且为PCR筛选文库提供了可能。 2. 采用部分简并引物，通过RT-PCR克隆了水母雪莲查尔酮异构酶基因Smchi特异探针，并根据这一探针序列设计特异引物，采用TD-PCR法筛选cDNA文库，获得Smchi cDNA序列，全长831bp，编码一个232氨基酸残基的蛋白。根据cDNA序列克隆了Smchi DNA序列，结果表明Smchi基因无内含子。Smchi cDNA序列与翠菊chi基因高度同源，ORF区域同源性高达84%，但推测氨基酸序列则只有79.3%。Smchi mRNA具有复杂的二级结构。SmCHI具有典型的Chalcone结构域，其二级结构与苜蓿CHI蛋白十分相似，7个α-螺旋与8个延伸链由随机结构联系起来。但其活性中心的第三个关键氨基酸残基N115为M115所取代，这一取代可能导致该蛋白无生物活性，也可能使它具有一般CHI不同的功能。构建Smchi正义、反义真核表达载体，通过农杆菌介导导入烟草，获得转正义、反义Smchi基因的烟草。转基因烟草花色未改变，但叶片总黄酮发生了显著的变化，50%转正义基因烟草总黄酮含量显著提高，最高比对照提高6倍，70%转反义基因烟草总黄酮含量显著下降，最多达85.1%，初步证明Smchi具有功能，并能有效调控烟草类黄酮次生代谢。因此，SmCHI可能是不同于已知CHI的一类新的CHI蛋白，它催化的反应可能与花色素合成无关，其反应机制也可能有所不同。 3. 伴随Smchi的克隆获得了一个黄烷酮3-羟化酶类似基因Smf3h的cDNA，全长1334bp，编码一个343aa的蛋白。根据这一cDNA序列克隆了Smf3h DNA序列，全长1630bp，结果表明该基因由4个外显子和3个内含子组成。Smf3h mRNA具有十分复杂的二级结构。 推测蛋白氨基酸同源性分析表明，SmF3H属于2OG-FeII_Oxy家族，与同一家族的的颠茄H6H的同源性为45%，与拟南芥F3H的同源性为40%，但对SmF3H、典型F3H及典型H6H推测蛋白二级结构、活性中心关键氨基酸残基的位置与相对距离、软件进行功能预测分析，发现SmF3H与F3H更相似。构建Smf3h的正义与反义真核表达载体，通过农杆菌介导导入烟草，但只获得一批转正义基因的烟草，反义基因导致烟草不能再生而未获得转反义基因烟草。转基因烟草花色未改变，叶片总黄酮也与对照相似，初步确认Smf3h与烟草类黄酮生物合成无关，而是一个既不属于f3h也不属于h6h的功能未确定的新基因。 4. 采用与克隆Smchi基因相似的方法，从cDNA文库中克隆了SmP基因cDNA，全长969bp，编码一个256 aa的蛋白质。根据cDNA序列克隆了SmP基因的DNA序列，结果表明，SmP基因无内含子。SmP基因cDNA 一级结构及mRNA二级结构预测分析表明，该基因A+T含量很高（63%），所形成二级结构以A-T配对为主，其稳定性可能较差。SmP推测蛋白序列具有R2R3-Myb转录因子的典型特征，在N-端具有两个Myb DNA-binding Domain，其二级结构与鸡Myb转录因子1A5J十分相似，与其他基因如水稻OsMYB、番茄ThMYB的同源区域主要集中在这一结构域，分别为71.3%和70.8%;C-端富含丝氨酸，与烟草NtMYB、葡萄VlMYB等类黄酮调控因子相似，都呈寡聚体分布，并具有相同的保守磷酸化位点S170与S206。构建SmP基因真核表达载体，通过农杆菌介导导入烟草，获得大量转基因烟草。转基因烟草花色未发生改变，但51%的转基因烟草叶片总黄酮含量都显著提高（0.5-6倍），表明SmP具有促进烟草类黄酮生物合成的功能，但所调控的支路与花色素合成无关。初步试验结果表明，转SmP基因烟草对蚜虫具有很高的抗性，可有效地抑制蚜虫在烟草上的生长，抑制率最高可达92%-100%。这一抗性与烟草中类黄酮的积累可能具有直接的联系，但还需要进一步的试验证明。 5. 与美国俄亥俄州立大学Erich Grotewold 博士实验室合作，完成了微型EST库50个克隆的测序并进行了分析，从中获得了水母雪莲花色素合酶基因SmANS及醛脱氢酶基因SmALDH的特异探针。根据SmANS特异探针设计引物，采用PCR从这50个克隆中筛选获得了SmANS的cDNA序列，全长1229bp，编码一个356aa的蛋白质。SmANS在cDNA水平上与同属的翠菊ANS基因高度同源，但同源区域集中在ORF区域，达到80%，mRNA 预测二级结构十分复杂;推测氨基酸序列与翠菊ANS同源性达到82.9%。SmANS属于2OG-FeII_Oxy家族，在2OG-FeII_Oxy结构域高度保守，与翠菊、甜橙ANS保守结构域同源性达到94%。预测蛋白二级结构以α-螺旋-β-折叠为主，由7个主螺旋和11个主β-折叠及随机结构连接而成，并具有2OG-FeII_Oxy家族活性中心的三个保守的组氨酸残基（His84、His235、His291）和一个天冬氨酸残基（Asp237）。 6. 根据微型EST库中获得的SmALDH特异探针设计引物，采用PCR从这50个克隆中筛选获得了SmALDH基因cDNA 序列，全长1664bp，编码一个491aa的蛋白质。SmALDH基因cDNA具有独特的碱基组成，3/-UTR富含A+T，占该区域碱基总量的80%，5/-UTR的A+T和G+C各占50%，比ORF区域（52%）还低，因此其mRNA二级结构中5/-UTR可以单独形成自身二级结构并且十分稳定，这可能影响基因的表达。这一现象在水稻、玉米等植物中也存在。SmALDH在cDNA水平上在ORF区域与拟南芥、藏红花、水稻等具有较高同源性，分别为64.03%、63.89%、63.72%，但在推测蛋白氨基酸序列水平上同源性反而较低，分别为54.9%、54.3%、54.0%。SmALDH缺少线粒体定位信号，为胞质醛脱氢酶，具有一个Aldedh 保守结构域，还具有与1OF7-H相似的以α-螺旋-β-折叠为主的二级结构，由10个主螺旋和15个主β-折叠及随机结构连接而成。由于ALDH在植物细胞乙醇发酵中具有解除醛类物质毒害的功能，因此SmALDH基因的克隆为改造细胞自身以适应发酵培养条件，解决水母雪莲细胞大规模培养中需氧问题提供了可能。

Hybridization between two serranids, the coney (Cephalopholis fulva) and the creole-fish (Paranthias furcifer), at Bermuda

Intergeneric hybridization between the epinepheline serranids Cephalopholis fulva and Paranthias furcifer in waters off Bermuda was investigated by using morphological and molecular characters. Putative hybrids, as well as members of each presumed parent species, were analyzed for 44 morphological characters and screened for genetic variation at 16 nuclear allozyme loci, two nuclear (n)DNA loci, and three mitochondrial (mt)DNA gene regions. Four of 16 allozyme loci, creatine kinase (CK-B*), fumarase (FH*), isocitrate dehydrogenase (ICDH-S*), and lactate dehydrogenase (LDH-B*), were unique in C. fulva and P. furcifer. Restriction fragments of two nuclear DNA intron regions, an actin gene intron and the second intron in the S7 ribosomal protein gene, also exhibited consistent differences between the two presumed parent species. Restriction fragments of three mtDNA regions—ND4, ATPase 6, and 12S/16S ribosomal RNA—were analyzed to identify maternal parentage of putative hybrids. Both morphological data and nuclear genetic data were found to be consistent with the hypothesis that the putative hybrids were the result of interbreeding between C. fulva and P. furcifer. Mean values of 38 morphological characters were different between presumed parent species, and putative hybrids were intermediate to presumed parent species for 33 of these characters. A principal component analysis of the morphological and meristic data was also consistent with hybridization between C. fulva and P. furcifer. Thirteen of 15 putative hybrids were heterozygous at all diagnostic nuclear loci, consistent with F1 hybrids. Two putative hybrids were identified as post-F1 hybrids based on homozygosity at one nuclear locus each. Mitochondrial DNA analysis showed that the maternal parent of all putative hybrid individuals was C. fulva. A survey of nuclear and mitochondrial loci of 57 C. fulva and 37 P. furcifer from Bermuda revealed no evidence of introgression between the parent species mediated by hybridization.

Nifedipine调节白皮松(Pinus bungeana)花粉管蛋白质表达及其对细胞壁构建的影响

花粉管是种子植物受精过程中的雄性生殖单位的载体，由于其生长依赖于胞内Ca2+梯度，并具有典型的顶端极性生长的特点，因而成为近年来研究植物细胞相互识别、胞内和胞外信号传导理想的模式系统。裸子植物花粉与被子植物相比具有萌发时间长、生长缓慢等特点。Ca2+在裸子植物花粉萌发和花粉管生长中的作用机制目前尚不明确。本研究以裸子植物白皮松(Pinus bungeana)的花粉为材料，运用不同浓度钙通道抑制剂Nifedipine（Nif）处理，对其花粉萌发和花粉管生长进行了细胞学研究和蛋白质组学分析，以探讨Ca2+对白皮松花粉生长的调控机制，为进一步揭示裸子植物花粉萌发和花粉管生长机理提供参考。 本论文首先研究了钙通道抑制剂Nif和Ca2+螯合剂EGTA对白皮松花粉萌发和花粉管生长的影响。结果表明，用Nif处理花粉后，花粉萌发和花粉管生长均受到明显抑制。经Ca2+荧光探针Fluo-3AM标记，对Nif处理后Ca2+在花粉管中的分布模式进行了观察，发现Ca2+在正常生长的花粉管中呈梯度分布，并在其顶端的荧光最强。与对照相比，处理后的花粉管荧光强度明显减弱，且顶端Ca2+梯度消失。通过EGTA漂洗后的花粉粒，在正常培养基上萌发率较高，但其生长速率受到抑制。由此说明了细胞壁钙库对花粉管生长的抑制效应显著高于对花粉萌发的影响，是花粉管生长的限速因子。同时外加钙调素还可逆转EGTA对其花粉萌发和花粉管生长的抑制。上述结果表明，白皮松花粉萌发及花粉管生长需要外源Ca2+的内流，以及胞内形成的Ca2+浓度梯度。 用FM4-64探针标记结果发现，正常花粉管中的胞吞作用主要发生在顶端和亚顶端区域，胞吞的小泡也集中分布在这两个区域。经Nif处理后，既不影响花粉管的胞吞过程，同时胞吞发生的位置也与对照相似，只是胞吞的小泡分散于整个花粉管中。电子显微镜观察表明，各种细胞器在白皮松正常生长的花粉管中分布与被子植物存在较大差异，例如前者无明显地分区现象，不具胼胝质塞。白皮松花粉管顶端和亚顶端的壁旁体与质膜融合现象频繁发生。花粉管经Nif处理后，线粒体出现不同程度的解体和液泡化，内质网液泡化和核糖体脱落，液泡大量聚集在花粉管顶端，壁旁体与膜融合现象减少，以及花粉管壁明显变薄等。此外，通过微丝特异性探针鬼笔环肽标记结果表明，正常生长花粉管的微丝呈长轴向排列， Nif处理后微丝断裂，其断裂程度与处理浓度有关。由此可见，外源Ca2+对花粉管的胞吞无明显抑制或促进作用，但对胞吞小泡重回收可能有影响。当胞内Ca2+梯度消失后，则明显抑制了微丝骨架的聚合，进而使胞吐作用减缓，高尔基体分泌小泡聚集，多种细胞器液泡化，引起花粉管顶端膨大，细胞壁变薄，继而抑制花粉管的正常生长。 运用免疫荧光标记技术显示，正常生长的花粉管壁含有纤维素、胼胝质、果胶质和阿拉伯半乳聚糖蛋白（AGPs），其中纤维素和胼胝质在细胞壁上呈均匀分布，而酸性果胶质只存在花粉管两侧壁上，酯化果胶分布于花粉管顶端。经过Nif处理后，胼胝质和酸性果胶质均在花粉管顶端累积，而AGPs和纤维素的分布却无明显变化。另外，傅里叶红外光谱分析结果也同样支持上述结论。通过花粉管壁蛋白的SDS-PAGE分析表明，Nif对细胞壁蛋白的合成也有较大的影响。 在花粉管的钙通道受到抑制后，应用蛋白质组学技术分析其蛋白质的表达图谱，通过双向电泳已分离出约1000个蛋白质斑点，经软件分析发现，除其中50个蛋白斑点外，大部分蛋白质的表达量均未发生变化。上述50个发生变化的蛋白斑点酶切后，再经过ESI－MS/MS鉴定和质谱数据库的搜索，共鉴定出28个蛋白，其中12个为上调蛋白，16个下调蛋白，根据其主要功能分为与代谢、细胞扩展、翻译后修饰以及信号相关的蛋白。经过Nif处理后，花粉管中碳水化合物代谢能力下降，ATP的产生受到抑制，参与细胞壁多糖合成及小泡运输的蛋白，如valosin containing protein（VCP）、reversibly glycolsylated polypeptide(RGP)、UDP-glucose dehydrogenase (UDPGDH)和α-tubulin表达下调。另外，通过上述方法还鉴定出与丝氨酸/苏氨酸激酶保守结构域同源的受体蛋白激酶等。 综上所述，白皮松花粉管钙通道受到抑制后，通过影响花粉管蛋白的表达，抑制微丝微管骨架的组装，致使胞吐速度变慢，花粉管壁酸性果胶质、胼胝质等多糖分布的变化及总多糖含量的减少，最终抑制了花粉管的正常生长。

水稻(Oryza sativa L. ssp japonica)幼苗根质膜蛋白质组分析

根质膜具有重要的生物学功能，它参与了根响应脱落酸（ABA）的一系列活动。尽管已经有很多有关ABA影响根的生长和发育的报道，但是在蛋白质组水平上研究参与ABA信号转导及相关活动的质膜蛋白质的报道还未见到。我们期望利用蛋白质组学技术平台研究外源ABA胁迫下水稻根质膜与ABA功能相关的蛋白质组的变化。 本论文通过双向电泳（2DE）结合质谱（MALDI-TOF MS 和 MALDI-TOF/TOF MS）分析的方法鉴定了102个质膜相关蛋白质。这些蛋白质功能涉及到跨膜运输（16.2%）、胁迫反应（14.3%）、物质运输（4.8%）、细胞骨架动态变化（5.7%）、细胞壁重建（3.8%）、碳代谢和能量循环（13.3%）、蛋白质代谢（14.3%）、信号转导（18.1%）和其他功能的蛋白质（4.8%），以及未知功能的蛋白质（2.9%）。其中大约30％的蛋白质以同工型的形式存在。在这些鉴定结果中，有10个斑点（代表10种蛋白质）已被报道为质膜特异的蛋白质;68个蛋白质斑点（代表58种蛋白质）是质膜相关蛋白质。其余54个蛋白质斑点（代表42种蛋白质）是首次在水稻根的质膜囊泡中被鉴定出来。 在ABA处理条件下，我们在2DE胶上发现了15个响应ABA调节的蛋白质斑点。9个上调的蛋白质斑点分别代表以下9种蛋白质：vacuolar proton-ATPase A subunit, vacuolar ATPase B subunit、patatin、 Salt-stress root protein RS1、谷氨酰氨合成酶（Glutamine synthetase，GS）、OSR40c1、H+-exporting ATPase （vacuolar ATPase E subunit）、甘油醛-3-磷酸脱氢酶I型（glyceraldehyde-3- phosphate dehydrogenase, type I，GADPH）和醛缩酶C-1（aldolase C-1）。6个下调的蛋白质斑点分别代表4种蛋白质：endosperm lumenal binding protein、remorin protein、富含脯氨酸蛋白质（glycine-rich protein，GRP）和蔗糖合成酶（sucrose synthase, SuSy）。其中，OSR40c1和endosperm lumenal binding protein与蛋白质合成相关，从它们与ABA的关系中可以看出，ABA可能抑制了细胞的蛋白质合成。而vacuolar proton-ATPase A subunit、vacuolar ATPase B subunit和 H+-exporting ATPase参与了细胞质pH的调控，ABA致使了细胞质pH的上升。甘油醛-3-磷酸脱氢酶I型、醛缩酶C-1和蔗糖合酶参与了细胞壁的生长发育，ABA的作用可能导致了细胞壁生长发育的延迟。ABA促使Patatin上升，其作用可能与质膜膜脂的降解有关。而ABA的刺激也使谷氨酰氨合成酶的表达显著上升，谷氨酰氨合成酶可以去除细胞内有害的游离NH+4。同时还有未知功能的富含脯氨酸蛋白质（glycine-rich protein，GRP）同样受到ABA的诱导，但具体的功能及其与ABA的关系还要进一步的实验证据。

Intraspecific variation of isozymes in Arenicola marina (Polychaeta: Annelida)

Six enzyme systems, namely acid phosphatase, leucine aminopeptidase, phosphoglucose isomerase, tetrazolium oxidase, esterases and malate dehydrogenase were studied electrophoretically in Arenicola marina from various localities in United Kingdom. Out of 13 presumed loci, ten were found monomorphic. The three loci which appeared to be polymorphic are LAP-1, EST-2 and TO-1. Due to small sample size allele frequencies and genetic identity were not calculated. However, results indicate genetic difference among the population of A. marina.

菠菜甜菜碱醛脱氢酶的研究

本实验以菠菜叶片为材料，分离并纯化了甜菜碱醛脱氢酶（BADH，EC 1.2.1.8），并对其某些性质进行了研究。此外，还提取并纯化了poly (A)+RNA，并对其完整性进行了分析，主要结果如下： 1.菠菜甜菜碱醛脱氢酶存在于60％硫酸铵沉淀部分，70％硫酸铵沉淀部分未检出其活性。用层析法纯化该酶，使纯化倍数达到405.3倍。菠菜甜菜碱醛脱氢酶有两个同工酶。 2.菠菜甜菜碱醛脱氢酶主要定位于胞液中。其中，在过氧化物酶体及微粒体中有一定量活性存在，但在叶绿体中未检出其活性。 3.菠菜甜菜碱醛脱氢酶活性有较广的pH值范围，其最适pH范围为9.5左右。该酶以NAD作为特异性辅酶，其Km值为8.0×10-6M, Vmax为0.143nmol/min。该酶以甜菜碱醛作为特异性底物，其Km值为1.82×10-4M，Vmax为0.182nmol/min。该酶活性为0.125～1M的NaCl、KCl和脯氨酸所抑制，但0.125～1M的蔗糖及甜菜碱对其活性没有影响。 4.PCMB和Mersalyl抑制该酶的活性，DTT可逐步恢复被抑制的活性。稀土元素LaCl3对该酶活性没有影响，但CeCl则使其完全失活。另外，Mn2+和Mo6+离子对其活性没有影响，Mg2+离子可增加其活性。 5.菠菜叶片中有菠菜甜菜碱醛脱氢酶的抑制因子存在，该因子可能是一种小分子化合物。 6.应用酚-氯仿方法分离了菠菜叶片的poly (A)+RNA，并在-80℃低温下长期贮存。

甜菜碱提高植物光合作用对逆境抗性机理的研究

从菠菜中克隆甜菜碱醛脱氢酶( betaine aldehyde dehydrogenase，BADH)基因并转化烟草， 研究转基因烟草光合作用对高温和盐胁迫等环境胁迫的抗性机理，利用外源甜菜碱研究在正常条件下对植物光合作用的影响以及在盐胁迫下外源甜菜碱对玉米幼曲光合作刚的保护机理。主要结果如下： 转BADH基因烟草中能合成甘氨酸甜菜碱，合成的甜菜碱主要积累于叶绿体中。转BADH 基因烟草提高了对高温胁迫的抗性，在中度高温胁迫下，转基冈烟草生长利光合作用对高温 的抗性增强。中度高温胁迫下，转基冈烟草光合作用的维持是由于甜菜碱对Rubisco活化酶的保护作用。在中度高温胁迫下甜菜碱通过维持Rubisco活化酶的活化态以及阻止Rubisco 活化酶山可溶性问质向类囊体的聚集，从而维持了Rubisco活化酶的活性，进而维持了C02 的同化。在严重高温胁迫下，烟草光系统II受到影响，转BADH基冈烟草通过提高体内抗氧化酶系统的功能，减轻了高温胁迫对光合机构造成的活性氧伤害，高温胁迫下转基因烟草体内抗氧化酶如SOD、APX、GR等酶活性明显高于野生型。在高温胁迫下，证明了甜菜碱对光系统II的保护作用主要在氧化侧，严重高温胁迫下，转基因烟草维持较高的PSII活性。 转BADH基因烟草提高了对盐胁迫的抗性，盐胁迫下转基因烟草光合作用的维持与盐胁迫下转基因烟草较高的气孔导度和抗氧化酶活性的提高有关。 外源甜菜碱在正常的非胁迫条件下对植物的生长有促进作用，而这一作用与光合速率的提高有关。通过对气孔导度、光合碳同化关键酶以及叶绿素荧光分析证明，甜菜碱对光合作用的促进与气孔导度的提高有关，同时甜菜碱提高了光系统ll的实际光化学效率。 外源甜菜碱提高了盐胁迫条件下植物的抗性，抗盐性的提高与盐胁迫下甜菜碱对气孔导度的提高以及维持较高的光系统II光化学活性有关。

The ADH1B Arg47His polymorphism in East Asian populations and expansion of rice domestication in history

Background: The emergence of agriculture about 10,000 years ago marks a dramatic change in human evolutionary history. The diet shift in agriculture societies might have a great impact on the genetic makeup of Neolithic human populations. The regionally restricted enrichment of the class I alcohol dehydrogenase sequence polymorphism (ADH1BArg47His) in southern China and the adjacent areas suggests Darwinian positive selection on this genetic locus during Neolithic time though the driving force is yet to be disclosed. Results: We studied a total of 38 populations (2,275 individuals) including Han Chinese, Tibetan and other ethnic populations across China. The geographic distribution of the ADH1B*47His allele in these populations indicates a clear east-to-west cline, and it is dominant in south-eastern populations but rare in Tibetan populations. The molecular dating suggests that the emergence of the ADH1B*47His allele occurred about 10,000 similar to 7,000 years ago. Conclusion: We present genetic evidence of selection on the ADH1BArg47His polymorphism caused by the emergence and expansion of rice domestication in East Asia. The geographic distribution of the ADH1B*47His allele in East Asia is consistent with the unearthed culture relic sites of rice domestication in China. The estimated origin time of ADH1B*47His allele in those populations coincides with the time of origin and expansion of Neolithic agriculture in southern China.