Modulation of α-synuclein aggregation and toxicity

Dissertação para obtenção do Grau de Mestre em Genética Molecular e Biomedicina

Development and modulation of magnetic responsive supported ionic liquid membranes

The work presented in this thesis aims at developing a new separation process based on the application of supported magnetic ionic liquid membranes, SMILMs, using magnetic ionic liquids, MILs. MILs have attracted growing interest due to their ability to change their physicochemical characteristics when exposed to variable magnetic field conditions. The magnetic responsive behavior of MILs is thus expected to contribute for the development of more efficient separation processes, such as supported liquid membranes, where MILs may be used as a selective carrier. Driven by the MILs behavior, these membranes are expected to switch reversibly their permeability and selectivity by in situ and non-invasive adjustment of the conditions (e.g. intensity, direction vector and uniformity) of an external applied magnetic field. The development of these magnetic responsive membrane processes were anticipated by studies, performed along the first stage of this PhD work, aiming at getting a deep knowledge on the influence of magnetic field on MILs properties. The influence of the magnetic field on the molecular dynamics and structural rearrangement of MILs ionic network was assessed through a 1H-NMR technique. Through the 1H-NMR relaxometry analysis it was possible to estimate the self-diffusion profiles of two different model MILs, [Aliquat][FeCl4] and [P66614][FeCl4]. A comparative analysis was established between the behavior of magnetic and non-magnetic ionic liquids, MILs and ILs, to facilitate the perception of the magnetic field impact on MILs properties. In contrast to ILs, MILs show a specific relaxation mechanism, characterized by the magnetic dependence of their self-diffusion coefficients. MILs self-diffusion coefficients increased in the presence of magnetic field whereas ILs self-diffusion was not affected. In order to understand the reasons underlying the magnetic dependence of MILs self-diffusion, studies were performed to investigate the influence of the magnetic field on MILs’ viscosity. It was observed that the MIL´s viscosity decreases with the increase of the magnetic field, explaining the increase of MILs self-diffusion according to the modified Stokes- Einstein equation. Different gas and liquid transport studies were therefore performed aiming to determine the influence of the magnetic behavior of MILs on solute transport through SMILMs. Gas permeation studies were performed using pure CO2 andN2 gas streams and air, using a series of phosphonium cation based MILs, containing different paramagnetic anions. Transport studies were conducted in the presence and absence of magnetic field at a maximum intensity of 1.5T. The results revealed that gas permeability increased in the presence of the magnetic field, however, without affecting the membrane selectivity. The increase of gas permeability through SMILMs was related to the decrease of the MILs viscosity under magnetic field conditions.(...)

Modulation of the secretome of hBMSCs by tailoring the macromolecular gradient in hydrogels to generate tissue-to-tissue interfaces

Tissue-to-tissue interfaces are commonly present in all tissues exhibiting structural, biological and chemical gradients serving a wide range of physiological functions. These interfaces are responsible for mediation of load transfer between two adjacent tissues. They are also important structures in sustaining the cellular communications to retain tissueâ s functional integration and homeostasis. [1] All cells have the capacity to sense and respond to physical and chemical stimulus and when cultured in three-dimensional (3D) environments they tend to perform their function better than in two-dimensional (2D) environments. Spatial and temporal 3D gradient hydrogels better resemble the natural environment of cells in mimicking their extracellular matrix. [2] In this study we hypothesize that differential functional properties can be engineered by modulation of macromolecule gradients in a cell seeded threedimensional hydrogel system. Specifically, differential paracrine secretory profiles can be engineered using human Bone Marrow Stem Cells (hBMSCâ s). Hence, the specific objectives of this study are to: assemble the macromolecular gradient hydrogels to evaluate the suitablity for hBMSCâ s encapsulation by cellular viability and biofunctionality by assessing the paracrine secretion of hBMSCâ s over time. The gradient hydrogels solutions were prepared by blend of macromolecules in one solution such as hyaluronic (HA) acid and collagen (Col) at different ratios. The gradient hydrogels were fabricated into cylindrical silicon moulds with higher ratio solutions assembled at the bottom of the mould and adding the two solutions consecutively on top of each other. The labelling of the macromolecules was performed to confirm the gradient through fluorescence microscopy. Additionally, AFM was conducted to assess the gradient hydrogels stiffness. Gradient hydrogels characterization was performed by HA and Col degradation assay, degree of crosslinking and stability. hBMSCâ s at P3 were encapsulated into each batch solution at 106 cells/ml solution and gradient hydrogels were produced as previously described. The hBMSCâ s were observed under confocal microscopy to assess viability by Live/Dead® staining. Cellular behaviour concerning proliferation and matrix deposition was also performed. Secretory cytokine measurement for pro-inflammatory and angiogenesis factors was carried out using ELISA. At genomic level, qPCR was carried out. The 3D gradient hydrogels platform made of different macromolecules showed to be a suitable environment for hBMSCâ s. The hBMSCâ s gradient hydrogels supported high cell survival and exhibited biofunctionality. Besides, the 3D gradient hydrogels demonstrated differentially secretion of pro-inflammatory and angiogenic factors by the encapsulated hBMSCâ s. References: 1. Mikos, AG. et al., Engineering complex tissues. Tissue Engineering 12,3307, 2006 2. Phillips, JE. et al., Proc Natl Acad Sci USA, 26:12170-5, 2008

Tensile stress–crack width law for steel fibre reinforced self-compacting concrete obtained from indirect (splitting) tensile tests

In this work, the fracture mode I parameters of steel fibre reinforced self-compacting concrete (SFRSCC) were derived from the numerical simulation of indirect splitting tensile tests. The combined experimental and numerical research allowed a comparison between the stress-crack width (σ - w) relationship acquired straightforwardly from direct tensile tests, and the σ - w response derived from inverse analysis of the splitting tensile tests results. For this purpose a comprehensive nonlinear 3D finite element (FE) modeling strategy was developed. A comparison between the experimental results obtained from splitting tensile tests and the corresponding FE simulations confirmed the good accuracy of the proposed strategy to derive the σ – w for these composites. It is concluded that the post-cracking tensile laws obtained from inverse analysis provided a close relationship with the ones obtained from the experimental uniaxial tensile tests.

A model to simulate the moment-rotation and crack width of FRC members reinforced with longitudinal bars

The present work describes a model for the determination of the moment–rotation relationship of a cross section of fiber reinforced concrete (FRC) elements that also include longitudinal bars for the flexural reinforcement (R/FRC). Since a stress–crack width relationship (σ–w)(σ–w) is used to model the post-cracking behavior of a FRC, the σ–w directly obtained from tensile tests, or derived from inverse analysis applied to the results obtained in three-point notched beam bending tests, can be adopted in this approach. For a more realistic assessment of the crack opening, a bond stress versus slip relationship is assumed to simulate the bond between longitudinal bars and surrounding FRC. To simulate the compression behavior of the FRC, a shear friction model is adopted based on the physical interpretation of the post-peak compression softening behavior registered in experimental tests. By allowing the formation of a compressive FRC wedge delimited by shear band zones, the concept of concrete crushing failure mode in beams failing in bending is reinterpreted. By using the moment–rotation relationship, an algorithm was developed to determine the force–deflection response of statically determinate R/FRC elements. The model is described in detail and its good predictive performance is demonstrated by using available experimental data. Parametric studies were executed to evidence the influence of relevant parameters of the model on the serviceability and ultimate design conditions of R/FRC elements failing in bending.

Light-controlled resistive switching in laser-assisted annealed Ba0.8Sr0.2TiO3 thin films

In this work, Ba0.8Sr0.2TiO3 (BST)/ITO structures were grown on glass substrate and laser assisted annealing (LAA) was performed to promote the crystallization of BST. Atomic force microscopy and X-ray diffraction studies confirm the crack free and polycrystalline perovskite phase of BST. White light controlled resistive switching (RS) effect in Au/BST/ITO device is investigated. The device displays the electroforming-free bipolar RS characteristics and are explained by the modulationof the width and height of barrier at the BST/ITO interface via ferroelectric polarization. Moreover, the RS effect is signifi- cantly improved under white light illumination compared to that in the dark. The enhanced RS and photovoltaic effects are explained by considering depolarization field and charge distribution at the interface. The devices exhibit stable retention characteristics with low currents (mA), which make them attractive for non volatile memory devices.

Flood pulse and spatial dynamics of mercury in sediments in Puruzinho lake, Brazilian Amazon

The study was conducted in Puruzinho lake (Humaitá, AM) considering seasonal periods of rainy and dry in way to elucidate the flood pulse importance in the deposition, remobilization and distributions of mercury and organic matter in bottom sediments in the Madeira River Basin (Brazilian Amazon). Bottom sediments and soils samples were analyzed for total mercury and organic matter. Mercury concentrations obtained in bottom sediment were 32.20-146.40 ng g-1 and organic matter values were 3.5 - 18.0%. The main region for accumulation of mercury and organic matter was in the central and deepest lake area In the rainy season there was a greater distribution of Hg and organic matter, mainly controlled by means of income of the Madeira river water during flooding, while the predominant process in the dry season was the remobilization of total Hg due to the resuspension of bottom sediments.

Exploring the role of O-Mannosylation in the modulation of E-Cadherin function in Gastric Cancer cell line models

Dissertação de mestrado em Bioquímica Aplicada – Biomedicina

Pulse wave velocity distribution in a cohort study: from arterial stiffness to early vascular aging

BACKGROUND: By contrast with other southern European people, north Portuguese population registers an especially high prevalence of hypertension and stroke incidence. We designed a cohort study to identify individuals presenting accelerated and premature arterial aging in the Portuguese population. METHOD: Pulse wave velocity (PWV) was measured in randomly sampled population dwellers aged 18-96 years from northern Portugal, and used as a marker of early vascular aging (EVA). Of the 3038 individuals enrolled, 2542 completed the evaluation. RESULTS: Mean PWV value for the entire population was 8.4?m/s (men: 8.6?m/s; women: 8.2?m/s; P??10?m/s). Logistic regression models indicated gender differences concerning the risk of developing large artery damage, with women having the same odds of PWV above 10?m/s 10 years later than men. CONCLUSION: The population PWV values were higher than expected in a low cardiovascular risk area (Portugal). High prevalence rates of EVA and noteworthy large artery damage in young ages were found.

Autonomic Modulation of the Heart in Systemic Arterial Hypertension

OBJECTIVE: To analyze the heart rate variability in patients with mild to moderate systemic arterial hypertension. METHODS: Thirty-two healthy (group I) and 70 systemic arterial hypertensive (group II) individuals, divided according to age (40 to 59 and 60 to 80 years old, respectively) and with a similar distribution by sex were studied. Thirty-one had left ventricular hypertrophy (LVH), 22 were overweight, and 16 had Type II diabetes mellitus. Smoking, alcohol ingestion, and sedentary habits were the same between groups. Variability in heart rate was analyzed in the time domain, using standard deviations of normal RR intervals (SDNN) and the differences between maximal brady- and tachycardia (D-BTmax) during sustained inspiration. Analysis of the frequency band of the power spectrum between 0.05 and 0.40 Hz at rest and during controlled respiration was chosen for analysis of the frequency domain. RESULTS: In both time and frequency domains, variables were lower in group II than in group I. Within groups, statistically significant variables were only found for individuals in the 40 to 59 year old group. The presence of LVH, overweight, or diabetes mellitus did not influence the variability in heart rate to a significant extent. CONCLUSION: Variability in heart rate was a valuable instrument for analyzing autonomic modulation of the heart in arterial hypertension. The autonomic system undergoes significant losses in cardio-modulatory capacity, more evident in subjects between 40 and 59 years old. In those over 60 years old, reduced variability in heart rate imposed by aging was not significantly influenced by the presence of systemic arterial hypertension.

The application of the equivalent annulus width concept in thermal diffusion separations

The equivalent annulus width concept is used to characterize a small commercial thermogravitational hermal diffusion column and its validity checked experimentally by separating batchwise in the column mixtures of n-heptanebenzene with different initial concentrations. The equation of Ruppell and Coull was used to analyse the data in the short separation times range and determine the equivalent annulus width. Good agreement was obtained between the experimental and predicted time-separation curves when using the equivalent annulus width value and on averaged value of the thermal diffusion constant. A new method is presented for the simultaneous determination of the equivalent annulus width and the thermal diffusion constant of a binary mixture from a single set of experimental data.

Preservación de la información génica en bacterias; mecanismos y modulación molecular. Preservation of the genetic information in bacteria; mechanisms and molecular modulation.

El objetivo general del presente proyecto es contribuir a la caracterización genética y bioquímica molecular de mecanismos involucrados en el mantenimiento de la información génica, a través del estudio de sistemas fisiológicos involucrados en la prevención, reparación y tolerancia de mutaciones. Dichos sistemas se encuentran evolutivamente conservados y ampliamente distribuidos en los seres vivos. La importancia de los mismos se refleja en el hecho que su deficiencia genera en humanos, enfermedades genéticas, apoptosis y cáncer; y en especies procariotas, células denominadas "hipermutadoras". En los últimos años el estudio de la hipermutabilidad en bacterias ha cobrado gran interés ya que se le atribuye importancia en procesos infectivos y en aspectos básicos relacionados a evolución. Nuestro modelo de estudio son las bacterias Pseudomonas aeruginosa y Escherichia coli, siendo esta última especie no solo modelo de estudio sino también especie de referencia. P. aeruginosa es una bacteria ambiental gram negativa, e importante patógeno oportunista de humanos. Específicamente nos proponemos estudiar en P. aeruginosa algunos aspectos particulares del Sistema de Reparación de Bases Apareadas Incorrectamente (Mismatch Repair System, MRS), del Sistema de Prevención/Reparación de Lesiones Oxidativas generadas a través de 8-oxo-7,8-dihidroguanina (8-oxo-dG ó GO) y el papel de las ADN Polimerasas de baja fidelidad en la modulación de la tasa de mutación. Asimismo estamos interesados en estudiar en cepas de E. coli deficientes en el sistema Dam, la existencia de subpoblaciones de alta estabilidad genética debido a la eliminación de posibles mutantes por incremento de la expresión de los otros componentes del MRS. Metodológicamente la caracterización bioquímica de factores proteicos se llevará a cabo utilizando proteínas recombinantes purificadas, análisis de interacción proteína-proteína y proteína-ADN mediante electroforesis en geles y resonancia plasmónica de superficie (Biacore), mutagenésis dirigida in vitro, y estudios de complementación en cepas mutantes específicas. Aspectos fenotípicos y de regulación génica en cultivos de biofilm y células en suspensión serán estudiados mediante la construcción de cepas mutantes, fusiones transcripcionales, PCR en tiempo real, western blot y microscopia de fluorescencia confocal.

Sensibilización a Anfetamina y Cocaína: Mecanismos Neurobiológicos involucrados y factores ambientales que la modulan. Amphetamine and cocaine sensitization: neurobiological mechanisms involved and modulation by environmental factors.

La exposición a drogas de abuso, estrés o noxas perinatales puede producir una respuesta sensibilizada a las propiedades estimulantes y reforzantes de la droga. Este proceso de sensibilización, que comparte muchas de las características de otras formas de plasticidad neural, ha sido asociado con etapas tempranas de la adicción o reincidencia a la misma. El objetivo primario de este proyecto es identificar si los mecanismos neurobiológicos que median la sensibilización inducida por cocaína también ocurren en un modelo de sensibilización inducido por estrés de inmovilización y una noxa perinatal tal como la exposición a plomo, y determinar la relevancia de estas adaptaciones mediante intervenciones farmacológicas o manipulación de los productos génicos. Se estudiaran neuroadaptaciones identificadas en un modelo de sensibilización inducido por cocaína, en núcleos específicos del cerebro relevantes para el proceso de sensibilización, Núcleo Accumbens (NAc) y Corteza prefrontal (CPf). Neuropéptidos como met-encefalina y el sistema renina-angiotensina (RAS), interactúan con dopamina (DA) y glutamato (GLU) en este circuito. Considerando que la liberación de GLU, la expresión de receptores AMPA (GluR1) y los metabotrópicos mGluR2/3 como cambios en el remodelado del citoesqueleto de actina de NAc y CPf, han sido afectados por la administración repetida de cocaína en forma no contingente o por autoadministración, determinaremos los niveles o el estado de fosforilación proteínas y de GLU, en los distintos modelos de sensibilización. Además, la participación de RAS cerebral ser evaluada en el desarrollo y expresión del fenómeno de sensibilización a anfetamina y cocaína. Se utilizarán técnicas de inmunoblotting, inmunoprecipitación y de microdiálisis, y pruebas conductuales para determinar las propiedades estimulantes y reforzantes de las drogas. Encontrar un paralelo en los mecanismos neurobiológicos que median la sensibilización inducida por estrés, drogas o noxas perinatales es muy relevante para entender como redes celulares comunes pueden ejercer un rol en la adicción. La identificación de nuevas moléculas que modulen la sensibilización abre una perspectiva sumamente interesante para el estudio de futuros blancos terapéuticos a ser probados para el tratamiento de la adicción a sicoestimulantes.

Efecto de los ácidos grasos poliinsaturados y sus metabolitos en la modulación de factores de transcripción sobre la carcinogénesis. Effects of Polyunsaturatd fatty acids and their metabolites on transcriptional factors modulation in carcinogenesis.

El cáncer se origina por mutaciones, competición y selección natural en células somáticas de tejidos de diferentes órganos,siendo un proceso complejo y multifactorial que ocurre en una secuencia de etapas: iniciación, promoción y progresión (1). Factores hereditarios,genéticos y epigenéticos como los lípidos dietarios, estrés oxidativo, hormonas, pesticidas y otros, influyen tanto en el desarrollo como en la inhibición de esta enfermedad (2). Datos epidemiológicos y experimentales tanto nuestros como de otros laboratorios han demostrado que el consumo de dietas ricas en ácidos grasos de la familia n-3, n-6 o n-9 cambian la fluidez, la actividad de enzimas, el nivel de proteínas y favorecen la formación de moléculas bioactivas derivadas de los lípidos como los eicosanoides y endocanabinoides que modulan el proceso carcinogénico (3-15). Estos derivados lípídicos activan vias de señalización produciendo cambios especificos en la expresión génica, un proceso fundamental durante la transformación neoplásica (1-2).También ha sido demostrado que estos cambios en la expresión génica inducidos por derivados lipídicos modulan funciones en células cancerosas como proliferación y muerte celular, migración y producción de matriz extracelular (16-17). A pesar de estos conocimientos, la identidad de los derivados lipídicos implicados en la modulación de la expresión génica durante la transformación neoplásica asi como los mecanismos utilizados por estas moléculas permanecen aun poco conocidos. HIPOTESIS: En los modelos a utilizar en el presente proyecto, la variación lipídica de las membranas que se induzca por manipulación dietaria deberán generar también variaciones en los eicosanoides . endocanabinoides y otros peróxidos que afecten factores de transcripción nucleares como el p53 y GLI incidiendo en los mecanismos responsables de la muerte y proliferación de células cancerosas. OBJETIVOS: Nos proponemos establecer el impacto de dietas enriquecidas con ácidos grasos de las familias n-3, n-6 o n-9 sobre modelos experimentales in-vivo e in-vitro. Se estudiarán los ácidos grasos de membrana plasmática, la generación de eicosanoides y endocanabinoides derivados de las vias COX y LOX Además se determinará el efecto de los peróxidos en la expresión y actividad de los factores nucleares de transcripción p53 y GLI como mecanismos responsables de la muerte y proliferación celular. MATERIALES Y MÉTODO: Se utilizará un modelo in-vivo de cáncer de mama empleando ratones C57BL6J inducidos con DMBA que se alimentarán con una dieta base semi-sintética suplemetada con diferentes PUFAs (Chia: n-3, Maíz: n-6 y Oleico: n-9 , empleada en estudios previos (8).Modelos in vitro: se utilizarán lineas celulares cancerígenas humanas de mama MCF-7 y MDA, las cuales se tratarán exógenamente con diferentes PUFAS (GLA:n-6,EPA:n-3, Oleico n-9)(9). Se determinarán ácidos grasos de membranas por Cromatografía de gas (CG)(10-11). El análisis de eicosanoides en células tumorales se realizará por HPLC (9-11). Los endocanabinoides por GC-Espectometría de Masa (18).La formación de peróxidos intracelulares se determinará por análisis de Glutation reducido (GSH)(16).La apoptosis se medirá por actividad caspasas y por Citometria de flujo usando Annexina V FICT (19).La expresión celular de Tp53 y GLI se realizará por Western Blot, PCR e inmunohistoquímica (20-21).RESULTADOS ESPERADOS: Se espera que los lípidos añadidos en las dietas de ratones inyectados con DMBA o al medio de cultivo de células tumorales de mama o páncreas modifiquen los ácidos grasos de membrana y sus derivados lipídicos los eicosanoides y endocanabionoides que suponemos afectarán la activación y expresión de factores de transcripción regulando la carcinogénesis. IMPORTANCIA: Diseñar nuevos modelos experimentales para implementar en terapias génicas y aplicar los resultados sobre factores nutricionales que pudieran actuar como inhibidores o promotores del desarrollo del cáncer en humanos.

Thyroid hormone modulation of early neocortical network development

Magdeburg, Univ., Fak. für Naturwiss., Diss., 2012