Expression of apoptosis and survival genes in human memory T cell populations

RESUME Introduction: Les cellules T mémoires humaines sont classées en trois sous-populations sur la base de l'expression d'un marqueur de surface cellulaire, CD45RA, et du récepteur aux chimiokines, CCR7. Ces sous-populations, nommées cellules mémoires centrales (TcM), mémoires effectrices (TEM) et mémoires effectrices terminales (ITEM), ont des rôles fonctionnels distincts, ainsi que des capacités de prolifération et de régénération différentes. Cependant, la génération de ces différences reste encore mal comprise et on ignore les mécanismes moléculaires impliqués. Matériaux et Méthodes: Des cellules mononucléaires humaines du sang périphérique ont été séparées par cytométrie de flux selon leur expression de CD4, CD8, CD45RA et CCR7 en sous-populations de cellules CD4+ ou CD8+ naïves, TcM, TEM ou ITEM. Dans chacune de ces sous-populations, 14 gènes impliqués dans l'apoptose, la survie ou la capacité proliférative des cellules T ont été quantifiés par RT-PCR en temps réel, relativement à l'expression d'un gène de référence endogène. L'ARN provenant de 450 cellules T a été utilisé par gène et par sous-population. Les gènes analysés (cibles) comprenaient des gènes de survie (BAFF, APRIL, BAFF-R, BCMA, TACI, IL-15Rα, IL-7Rα), des gènes anti-apoptotiques (Bcl-2, BclxL, FLIP), des gènes pro-apoptotiques (Bad, Bax, Fast) et le gène anti-prolifératif, Tob. A l'aide de la méthode comparative delta-delta-CT, le taux d'expression des gènes cibles de chaque sous-population des cellules T mémoires CD4+ et CD8+, à été comparée à leur taux d'expression dans les cellules T naïves CD4+ et CD8+. Résultats: Dans les cellules CD8+, les gènes pro-apoptotiques Bax et Fast étaient surexprimés dans toutes les sous-populations mémoires, tandis que l'expression des facteurs anti-apoptotiques et de survie comme Bcl-2, APRIL et BAFF-R, étaient diminués. Ces deux tendances étaient particulièrement accentuées dans les sous-groupes des cellules mémoires TEM et TTEM. A noter que malgré le fait que leur expression était également diminuée dans les autres cellules mémoires, le facteur de survie IL-7Ra, était sélectivement surexprimé dans la sous-population de cellules TcM et l'expression d'IL-15Ra était sélectivement augmentée dans les TEM. Dans les cellules CD4+, le taux d'expression des gènes analysés était plus variable entre les sujets étudiés que dans les cellules CD8+, ne permettant pas de définir un profil d'expression spécifique. L'expression du gène de survie BAFF par contre, a été significativement augmentée dans toutes les sous-populations mémoire CD4+. Il en va de même pour l'expression d' APRIL et de BAFF-R, bien que dans moindre degré. A remarquer que l'expression du facteur anti-apoptotique Fast a été observée uniquement dans la souspopulation des TTEM. Discussion et Conclusions: Cette étude montre une nette différence entre les cellules CD8+ et CD4+, en ce qui concerne les profils d'expression des gènes impliqués dans la survie et l'apoptose des cellules T mémoires. Ceci pourrait impliquer une régulation cellulaire homéostatique distincte dans ces deux compartiments de cellules T mémoires. Dans les cellules CD8+ l'expression d'un nombre de gènes impliqués dans la survie et la protection de l'apoptose semblerait être diminuée dans les populations TEM et TTEM en comparaison à celle des sous-populations naïves et TEM, tandis que l'expression des gènes pro-apoptotiques semblerait être augmentée. Comme ceci paraît être plus accentué dans les TTEM, cela pourrait indiquer une plus grande disposition à l'apopotose dans les populations CCR7- (effectrices) et une perte de survie parallèlement à l'acquisition de capacités effectrices. Ceci parlerait en faveur d'un modèle de différentiation linéaire dans les cellules CD8+. De plus, l'augmentation sélective de l'expression d'IL-7Ra observée dans le sous-groupe de cellules mémoires TEM, et d'IL-15Ra dans celui des TEM, pourrait indiquer un moyen de sélection pour des réponses immunitaires mémoires à long terme par une réponse distincte à ces cytokines. Dans les cellules CD4+ par contre, aucun profil d'expression n'a pu être déterminé; les résultats suggèrent même une résistance relative à l'apoptose de la part des cellules mémoires. Ceci pourrait favoriser l'existence d'un modèle de différentiation plus flexible avec des possibilités d'interaction multiples. Ainsi, la surexpression sélective de BAFF, APRIL et BAFF-R dans les sous-populations individuelles des cellules mémoires pourrait être un indice de l'interaction de ces sous-groupes avec des cellules B. ABSTRACT Introduction: Based on their surface expression of the CD45 isoform and of the CCR7 chemokine receptor, memory T cells have been divided into the following three subsets: central memory (TAM), effector memory (TEM) and terminal effector memory (ITEM). Distinct functional roles and different proliferative and regenerative capacities have been attributed to each one of these subpopulations. The molecular mechanisms underlying these differences; however, remain poorly understood. Materials and Methods: According to their expression of CD4, CD8, CD45RA and CCR7, human peripheral blood mononuclear cells were sorted by flow-cytometry into CD4+ or CD8+ naïve, TAM, TEM and ITEM subsets. Using real-time PCR, the expression of 14 genes known to be involved in apoptotis, survival or proliferation of T cells was quantified separately in each individual subset, relative to an endogenous reference gene. The RNA equivalent of 450 T cells was used for each gene and subset. The target gene panel included the survival genes BAFF, APRIL, BAFF-R, BCMA, TACI, IL-15Rα and IL-7Rα, the anti-apoptotic genes Bcl2, Bcl-xL and FLIP, the pro-apoptotic genes Bad, Bax and Fast, as well as the antiproliferative gene Tob. Using the comparative CT-method, the expression of the target genes in the three memory T cell subsets of both CD4+ and CD8+ T cell populations was compared to their expression in the naïve T cells. Results: In CD8+ cells, the pro-apoptotic factors Bax and Fast were found to be upregulated in all memory T cell subsets, whereas the survival and anti-apoptotic factors Bcl-2, APRIL and BAFF-R were downregulated. These tendencies were most accentuated in TEM and TTEM subsets. Even though the survival factor IL-7Rα was also downregulated in these subsets, interestingly, it was selectively upregulated in the CD8+ TAM subset. Similarly, IL-15Rαexpression was shown to be selectively upregulated in the CD8+ TEM subset. In CD4+ cells, the expression levels of the analyzed genes showed a greater inter-individual variability than in CD8+ cells, thus suggesting the absence of any particular expression pattern for CD4+ memory T cells. However, the survival factor BAFF was found to be significantly upregulated in all CD4+ memory T cell subsets, as was also the expression of APRIL and BAFF-R, although to a lesser extent. Furthermore, it was noted that the pro-apoptotic gene Fast was only expressed in the TTEM CD4+ subset. Discussion and Conclusions: Genes involved in apoptosis and survival in human memory T cells have been shown to be expressed differently in CD8+ cells as compared to CD4+ cells, suggesting a distinct regulation of cell homeostasis in these two memory T cell compartments. The present study suggests that, in CD8+ T cells, the expression of various survival and antiapoptotic genes is downregulated in TEM and TTEM subsets, while the expression of proapoptotic genes is upregulated in comparison to the naïve and the TAM populations. These characteristics, potentially translating to a greater susceptibility to apoptosis in the CCR7- (effector) memory populations, are accentuated in the TTEM population, suggesting a loss of survival in parallel to the acquisition of effector capacities. This speaks in favour of a linear differentiation model in CD8+ T memory cells. Moreover, the observed selectively increased expression of IL-7Rα in CD8+ TAM cells - as that of IL-15Rα in CD8+ TEM cells -suggest that differential responsiveness to cytokines could confer a selection bias for distinct long-term memory cell responses. Relative to the results for CD8+ T cells, those for CD4+ T cells seem to indicate a certain resistance of the memory subsets to apoptosis, suggesting the possibility of a more flexible differentiation model with multiple checkpoints and potential interaction of CD4+ memory cells with other cells. Thus, the selective upregulation of BAFF, APRIL and BAFF-R in individual memory subsets could imply an interaction of these subsets with B cells.

Almost sure testability of classes of densities

Let a class $\F$ of densities be given. We draw an i.i.d.\ sample from a density $f$ which may or may not be in $\F$. After every $n$, one must make a guess whether $f \in \F$ or not. A class is almost surely testable if there exists such a testing sequence such that for any $f$, we make finitely many errors almost surely. In this paper, several results are given that allowone to decide whether a class is almost surely testable. For example, continuity and square integrability are not testable, but unimodality, log-concavity, and boundedness by a given constant are.

Distinct genetic structure in populations of Chrysoperla externa (Hagen) (Neuroptera, Chrysopidae) shown by genetic markers ISSR and COI gene

Distinct genetic structure in populations of Chrysoperla externa (Hagen) (Neuroptera, Chrysopidae) shown by genetic markers ISSR and COI gene. Green lacewings are generalist predators, and the species Chrysoperla externa presents a great potential for use in biological control of agricultural pests due to its high predation and reproduction capacities, as well as its easy mass rearing in the laboratory. The adaptive success of a species is related to genetic variability, so that population genetic studies are extremely important in order to maximize success of the biological control. Thus, the present study used nuclear (Inter Simple Sequence Repeat - ISSR) and mitochondrial (Cytochrome Oxidase I - COI) molecular markers to estimate the genetic variability of 12 populations in the São Paulo State, Brazil, as well as the genetic relationships between populations. High levels of genetic diversity were observed for both markers, and the highest values of genetic diversity appear associated with municipalities that have the greatest areas of native vegetation. There was high haplotype sharing, and there was no correlation between the markers and the geographic distribution of the populations. The AMOVA indicated absence of genetic structure for the COI gene, suggesting that the sampled areas formed a single population unit. However, the great genetic differentiation among populations showed by ISSR demonstrates that these have been under differentiation after their expansion or may also reflect distinct dispersal behavior between males and females.

Ús de minicasos a les classes expositives de psicologia

L’assoliment de l’Espai Europeu d’Educació Superior implica nous rols per a professorsi alumnes i la introducció de noves metodologies docents. En aquest article es presenta unaexperiència d’innovació en la docència de la Psicologia consistent en la incorporació deminicasos a les classes expositives de l’assignatura troncal i anual “Avaluació Psicològica” desegon curs de la llicenciatura de Psicologia. S’exposa el procediment i s’analitza l’opinió delsestudiants respecte a la utilitats dels minicasos per incrementar l’atenció, l’interès i lacomprensió de l’assignatura

Four functionally distinct populations of human effector-memory CD8+ T lymphocytes.

In humans, the pathways of memory and effector T cell differentiation remain poorly defined. We have dissected the functional properties of ex vivo effector-memory (EM) CD45RA-CCR7- T lymphocytes present within the circulating CD8+ T cell pool of healthy individuals. Our studies show that EM T cells are heterogeneous and are subdivided based on differential CD27 and CD28 expression into four subsets. EM(1) (CD27+CD28+) and EM(4) (CD27-CD28+) T cells express low levels of effector mediators such as granzyme B and perforin and high levels of CD127/IL-7Ralpha. EM(1) cells also have a relatively short replicative history and display strong ex vivo telomerase activity. Therefore, these cells are closely related to central-memory (CD45RA-CCR7+) cells. In contrast, EM(2) (CD27+CD28-) and EM(3) (CD27-CD28-) cells express mediators characteristic of effector cells, whereby EM(3) cells display stronger ex vivo cytolytic activity and have experienced larger numbers of cell divisions, thus resembling differentiated effector (CD45RA+CCR7-) cells. These data indicate that progressive up-regulation of cytolytic activity and stepwise loss of CCR7, CD28, and CD27 both characterize CD8+ T cell differentiation. Finally, memory CD8+ T cells not only include central-memory cells but also EM(1) cells, which differ in CCR7 expression and may therefore confer memory functions in lymphoid and peripheral tissues, respectively.

Características dos óxidos de ferro e de alumínio de diferentes classes de solos

Para avaliar as características dos óxidos de ferro e de alumínio, foram coletadas amostras de solos desenvolvidos de diferentes materiais de origem e estádios de desenvolvimento nos estados de MG, ES, RS e RR. A fração argila das amostras foi estudada por difratometria de raios-X (DRX), análise termodiferencial (ATD), análise termogravimétrica diferencial (ATGD) e microscopia eletrônica. Nos extratos resultantes da extração com oxalato de amônio (OA) e ditionito-citrato-bicarbonato (DCB), determinaram-se os teores de Al, Si e microelementos, inclusive Fe. Em geral, a goethita (Gt) foi o principal óxido de ferro da fração argila. Apenas para os solos desenvolvidos de basalto e de arenito, verificou-se o predomínio de hematita (Hm). Os solos do Grupo Barreiras (ES) apresentaram os menores teores de óxidos de ferro em decorrência do intenso processo de desferrificação sofrido pelos sedimentos. Por ser a Gt um óxido hidratado, quanto maior a relação Gt/(Gt + Hm), maior o teor de água extraída pelo DCB (r = 0,70***). Os solos menos desenvolvidos, principalmente no horizonte C, apresentaram os maiores teores de material menos cristalino extraído pelo OA (chegando a 28% para a amostra 17) e os maiores valores para a relação FeOA/FeDCB. Este material menos cristalino é constituído principalmente por Al, com menor participação de Fe. Parte das amostras apresentou valores próximos para o diâmetro médio do cristal (DMC) da Gt nas direções (110) e (111), indicando formato isodimensional do mineral. Os maiores valores de DMC para a Hm resultaram na menor superfície específica em relação à Gt. A substituição isomórfica de Fe por Al (SI) na Gt foi consideravelmente superior à da Hm (média de 218 e 85 mmol mol-1, respectivamente). Com a entrada de Al na estrutura da Gt, verificou-se redução no tamanho, principalmente na direção do eixo Z (r entre SI e DMC(111) = -0,80***), e no grau de cristalinidade do mineral. As correlações entre teor de ferro e outros elementos extraídos pelo DCB foram altas e significativas. Os microelementos, como verificado para o Al, substituem isomorficamente o Fe na estrutura dos óxidos. O DMC da gibbsita (Gb) foi consistentemente superior ao dos óxidos de ferro. Por meio de observações em microscópio eletrônico, a Gb, na fração argila, apresentou o formato de pequenas placas retangulares e, na fração silte, verificou-se tendência de formato esférico.

Relação entre adsorção de metais pesados e atributos químicos e físicos de classes de solo do Brasil

Este trabalho objetivou avaliar quais parâmetros obtidos dos modelos de isotermas de Freundlich e Langmüir melhor descrevem a adsorção de metais pesados em solos intemperizados e identificar a relação entre os parâmetros selecionados e os atributos químicos, físicos e mineralógicos de 12classes de solo do Brasil. Os solos foram coletados pela EMBRAPA-CNPS em diversos levantamentos nas regiões: Sul, Sudeste e Norte do País. Avaliou-se, por meio da análise de trilha, o desdobramento do coeficiente de correlação entre variáveis dependentes, obtidas através das isotermas de adsorção (parâmetros de adsorção), e variáveis independentes (atributos químicos e físicos do solo), bem como os efeitos diretos e indiretos para os elementos Cd, Cu, Pb e Zn. Os atributos do solo: argila, carbono orgânico, capacidade de troca catiônica efetiva, ferro extraído pelo citrato ditionito-bicarbonato e alumínio extraído pelo ataque sulfúrico foram os que apresentaram maiores coeficientes de correlação simples com os parâmetros de adsorção, tendo sido utilizados no modelo da análise de trilha para explicar a adsorção de metais pesados. A análise de trilha mostrou-se como uma ferramenta importante no estudo do comportamento dos metais pesados no solo. As constantes K F de isotermas de Freudlich e capacidade-tampão máxima (K Lb) de Langmuir apresentaram os coeficientes de determinação mais elevados e os menores valores do efeito da variável residual para todos os metais estudados. As variáveis que mais contribuíram com a adsorção de metais pesados foram carbono orgânico, capacidade de troca catiônica efetiva, pH, argila e alumínio total.

Iowa Fisheries Research Technical Series No. 75-1 Variations in the abundance of channel catfish year classes in the upper Mississippi River and causative factors Don R. Helms, Fishery Research Biologist Fisheries Section Jerry M. Conley, Superintendent of Fisheries December, 1975

study of channel catfish in the Mississippi River to determine differences in year class abundance and causative factors

Prediction of 18-month survival in patients with primary myelodysplastic syndrome. A regression model and scoring system based on the combination of chromosome findings and the Bournemouth score.

The predictive potential of six selected factors was assessed in 72 patients with primary myelodysplastic syndrome using univariate and multivariate logistic regression analysis of survival at 18 months. Factors were age (above median of 69 years), dysplastic features in the three myeloid bone marrow cell lineages, presence of chromosome defects, all metaphases abnormal, double or complex chromosome defects (C23), and a Bournemouth score of 2, 3, or 4 (B234). In the multivariate approach, B234 and C23 proved to be significantly associated with a reduction in the survival probability. The similarity of the regression coefficients associated with these two factors means that they have about the same weight. Consequently, the model was simplified by counting the number of factors (0, 1, or 2) present in each patient, thus generating a scoring system called the Lausanne-Bournemouth score (LB score). The LB score combines the well-recognized and easy-to-use Bournemouth score (B score) with the chromosome defect complexity, C23 constituting an additional indicator of patient outcome. The predicted risk of death within 18 months calculated from the model is as follows: 7.1% (confidence interval: 1.7-24.8) for patients with an LB score of 0, 60.1% (44.7-73.8) for an LB score of 1, and 96.8% (84.5-99.4) for an LB score of 2. The scoring system presented here has several interesting features. The LB score may improve the predictive value of the B score, as it is able to recognize two prognostic groups in the intermediate risk category of patients with B scores of 2 or 3. It has also the ability to identify two distinct prognostic subclasses among RAEB and possibly CMML patients. In addition to its above-described usefulness in the prognostic evaluation, the LB score may bring new insights into the understanding of evolution patterns in MDS. We used the combination of the B score and chromosome complexity to define four classes which may be considered four possible states of myelodysplasia and which describe two distinct evolutional pathways.

Perdas de solo e água por erosão hídrica influenciadas por métodos de preparo, classes de declive e níveis de fertilidade do solo

A erosão é a forma mais prejudicial de degradação do solo. Além de reduzir sua capacidade produtiva para as culturas, ela pode causar sérios danos ambientais, como assoreamento e poluição das fontes de água. Contudo, usando adequados sistemas de manejo do solo e bem planejadas práticas conservacionistas de suporte, os problemas de erosão podem ser satisfatoriamente resolvidos. Com o propósito de obter informações quantitativas sobre o assunto, para servirem de guia nos planejamentos conservacionistas de uso da terra, realizou-se um experimento de erosão sob chuva natural, em Latossolo Vermelho distroférrico típico textura muito argilosa, no município de Santo Ângelo, região das Missões (RS), de dezembro de 1994 a maio de 1996, objetivando quantificar as perdas de solo e água causadas por erosão hídrica. Os tratamentos consistiram dos métodos de preparo do solo convencional, reduzido e semeadura direta, avaliados sob as condições "solo com fertilidade corrigida" nas classes de declividade de 0-0,04; 0,04-0,08 e 0,08-0,12 m m-1 (com gradientes médios de, respectivamente, 0,035; 0,065 e 0,095 m m-1) e "solo com fertilidade atual" na classe de declividade de 0,04-0,08 m m-1. As operações de preparo do solo e semeadura foram efetuadas todas transversalmente ao declive, exceto para o tratamento-testemunha (preparo convencional, sem cultivo, continuamente descoberto e sem crosta), no qual as operações de aração e gradagem foram realizadas no sentido do declive. A seqüência de culturas utilizada na avaliação da erosão foi constituída de dois ciclos culturais de soja (Glycine max, L.), no período de primavera-verão de 1994/95 e 1995/96, e um de aveia preta (Avena strigosa, S.), no período de outono-inverno de 1995. O índice de erosividade das chuvas (EI30) calculado no período experimental (1,5 ano) foi de 10.236 MJ mm ha-1 h-1 e concentrou-se, repetidamente, em 1995 e 1996, nos meses de janeiro a março, perfazendo, acumuladamente nestes duplos períodos, 70 % do total. Perdas significativas de solo por erosão hídrica (até 80 Mg ha-1 em um único ciclo cultural) ocorreram somente no preparo convencional sem cultivo e estabelecido no sentido do declive (testemunha), embora o solo na parcela tenha apresentado um valor de erodibilidade muito baixo (fator K igual a 0,0091 Mg ha h MJ-1 mm-1 ha-1 ). Sob cultivo, porém em valores bem mais baixos, as perdas de solo continuaram sendo as maiores no preparo convencional (ao redor de 13,0 Mg ha-1 em 1,5 ano), notadamente nas classes de declividade média e alta, ficando o preparo reduzido com as intermediárias (ao redor de 4,0 Mg ha-1 em 1,5 ano) e a semeadura direta com as menores (ao redor de 1,0 Mg ha-1 em 1,5 ano), enquanto as perdas de água foram todas muito baixas e pouco diferenciadas. A condição "solo com fertilidade corrigida" aumentou muito a quantidade de fitomassa aérea produzida pelas culturas e, conseqüentemente, a massa de resíduos culturais, a percentagem de cobertura morta do solo e as perdas de solo por erosão hídrica, especialmente no preparo convencional; contudo, ela praticamente não influenciou as perdas de água. Apesar das operações de preparo do solo e semeadura em contorno, fertilidade do solo melhorada e alta resistência do solo à erosão, o sistema de produção aveia preta-soja em preparo convencional apresentou, em declives superiores a 0,04 m m-1, perdas anuais de solo por erosão muito próximas ao limite tolerável, já no curto comprimento de rampa de 21 m utilizado nas parcelas experimentais deste estudo.