Flaviviruses isolated from mosquitoes collected during the first recorded outbreak of Japanese encephalitis virus on Cape York Peninsula, Australia

In response to an outbreak of Japanese encephalitis (JE) virus on Cape York Peninsula, Australia, in 1998, mosquitoes were collected using CO2 and octenol-baited Centers for Disease Control and Prevention light traps. A total of 35,235 adult mosquitoes, comprising 31 species, were processed for virus isolation. No isolates of JE virus were recovered from these mosquitoes. However, 18 isolates of Kokobera virus, another flavivirus were obtained from Culex annulirostris. Twelve isolates were from western Cape York (minimum infection rate (MIR) of 0.61: 1,000 mosquitoes) and 6 were from the Northern Peninsula Area (MIR of 1.0:1,000). Potential explanations for the failure to detect JE virus in mosquitoes collected from Cape York Peninsula include the timing of collections, the presence of alternative bloodmeal hosts, differences in pig husbandry, asynchronous porcine seroconversion, and the presence of other flaviviruses.

4,6,8,10,16-penta- and 4,6,8,10,16,18-hexamethyldocosanes from the cane beetle Antitrogus parvulus - Cuticular hydrocarbons with unprecedented structure and stereochemistry

[GRAPHICS] The major cuticular hydrocarbons from the cane beetle species Antitrogus parvulus were deduced to be 4,6,8,10,16,18-hexa- and 4,6,8,10,16-pentamethyldocosanes 2 and 3, respectively. Isomers of 2,4,6,8-tetramethylundecanal 27, 36, and 37, derived from 2,4,6-trimethylphenol, were coupled with the phosphoranes 28 and 29 to furnish alkenes and, by reduction, diastereomers of 2 and 3. Chromatographic and spectroscopic comparisons confirmed 2 as either 6a or 6b and 3 as either 34a or 34b.

Estudo do uso de hidrotalcites de Mg-Al como catalisadores heterogéneos para produção de biodiesel

A transesterificação de óleos vegetais ou gorduras animais com um álcool de baixo peso molecular é o principal processo utilizado na produção de biodiesel. Actualmente os processos industriais utilizam catalisadores homogéneos para acelerar a reacção. No entanto a utilização de catalisadores heterogéneos, no processo de transesterificação, tem sido sugerido por vários investigadores pois, são amigos do ambiente e podem ser regenerados e reutilizados portanto possibilitam a utilização de processos contínuos. Neste contexto, a utilização de hidrotalcites Mg-Al, como catalisadores heterogéneos para produção de biodiesel foi investigada neste trabalho experimental. As hidrotalcites com diferentes razões molares Mg/Al (Mg/Al=1, 2, 3 e 4) foram preparadas pelo método de co-precipitação. As diversas matrizes catalíticas obtidas, calcinadas a diferentes temperaturas, foram caracterizadas por difracção de raios X (DRX), análise térmica (TG-DSC), espectroscopia de infravermelhos (MIR), microscopia electrónica de varrimento (SEM) e isotérmicas de adsorção com azoto (BET). Estes catalisadores foram testados na metanólise de óleos vegetais para produzir biodiesel. As hidrotalcites Mg/Al=2, HT2A e HT2B (preparada com metade da quantidade de NaOH) calcinadas a 507 ºC e 700 ºC, respectivamente, foram as que apresentaram melhores resultados ao catalisar a reacção com um rendimento em éster superior a 97%, utilizando 2.5% da massa de catalisador, em relação à massa do óleo, razão molar metanol/óleo igual a 12, temperatura reaccional de 65 ºC durante 4h. Foi também investigada a reutilização do catalisador e o efeito da temperatura de calcinação. Constatou-se que o catalisador hidrotalcite HT2B apresentou melhor comportamento catalítico pois permitiu catalisar a reacção de transesterificação até três ciclos reaccionais, convertendo em ésteres 97%, 92% e 34% no primeiro, segundo e terceiro ciclos reaccionais, respectivamente. A análise de, algumas propriedades do biodiesel obtido como, o índice de acidez, a viscosidade e o índice de iodo mostraram que os resultados obtidos estão dentro dos valores limite recomendados pela norma EN 14214. Em anexo apresenta-se uma comunicação à First International Conference on Materials for Energy, Karlsruhe, 2010.

A comprehensive high-throughput FTIR spectroscopy-based method for evaluating the transfection event: estimating the transfection efficiency and extracting associated metabolic responses

Reporter genes are routinely used in every laboratory for molecular and cellular biology for studying heterologous gene expression and general cellular biological mechanisms, such as transfection processes. Although well characterized and broadly implemented, reporter genes present serious limitations, either by involving time-consuming procedures or by presenting possible side effects on the expression of the heterologous gene or even in the general cellular metabolism. Fourier transform mid-infrared (FT-MIR) spectroscopy was evaluated to simultaneously analyze in a rapid (minutes) and high-throughput mode (using 96-wells microplates), the transfection efficiency, and the effect of the transfection process on the host cell biochemical composition and metabolism. Semi-adherent HEK and adherent AGS cell lines, transfected with the plasmid pVAX-GFP using Lipofectamine, were used as model systems. Good partial least squares (PLS) models were built to estimate the transfection efficiency, either considering each cell line independently (R 2 ≥ 0.92; RMSECV ≤ 2 %) or simultaneously considering both cell lines (R 2 = 0.90; RMSECV = 2 %). Additionally, the effect of the transfection process on the HEK cell biochemical and metabolic features could be evaluated directly from the FT-IR spectra. Due to the high sensitivity of the technique, it was also possible to discriminate the effect of the transfection process from the transfection reagent on KEK cells, e.g., by the analysis of spectral biomarkers and biochemical and metabolic features. The present results are far beyond what any reporter gene assay or other specific probe can offer for these purposes.

Automatic cymbal classification

Dissertação apresentada na Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa para a obtenção do grau de Mestre em Engenharia Informática

Comparative analysis of near and mid-infrared spectroscopy to monitor recombinant cyprosin production

Infrared spectroscopy, either in the near and mid (NIR/MIR) region of the spectra, has gained great acceptance in the industry for bioprocess monitoring according to Process Analytical Technology, due to its rapid, economic, high sensitivity mode of application and versatility. Due to the relevance of cyprosin (mostly for dairy industry), and as NIR and MIR spectroscopy presents specific characteristics that ultimately may complement each other, in the present work these techniques were compared to monitor and characterize by in situ and by at-line high-throughput analysis, respectively, recombinant cyprosin production by Saccharomyces cerevisiae. Partial least-square regression models, relating NIR and MIR-spectral features with biomass, cyprosin activity, specific activity, glucose, galactose, ethanol and acetate concentration were developed, all presenting, in general, high regression coefficients and low prediction errors. In the case of biomass and glucose slight better models were achieved by in situ NIR spectroscopic analysis, while for cyprosin activity and specific activity slight better models were achieved by at-line MIR spectroscopic analysis. Therefore both techniques enabled to monitor the highly dynamic cyprosin production bioprocess, promoting by this way more efficient platforms for the bioprocess optimization and control.

MicroRNA-375 plays a dual role in prostate carcinogenesis

Background: Prostate cancer (PCa), a highly incident and heterogeneous malignancy, mostly affects men from developed countries. Increased knowledge of the biological mechanisms underlying PCa onset and progression are critical for improved clinical management. MicroRNAs (miRNAs) deregulation is common in human cancers, and understanding how it impacts in PCa is of major importance. MiRNAs are mostly downregulated in cancer, although some are overexpressed, playing a critical role in tumor initiation and progression. We aimed to identify miRNAs overexpressed in PCa and subsequently determine its impact in tumorigenesis. Results: MicroRNA expression profiling in primary PCa and morphological normal prostate (MNPT) tissues identified 17 miRNAs significantly overexpressed in PCa. Expression of three miRNAs, not previously associated with PCa, was subsequently assessed in large independent sets of primary tumors, in which miR-182 and miR-375 were validated, but not miR-32. Significantly higher expression levels of miR-375 were depicted in patients with higher Gleason score and more advanced pathological stage, as well as with regional lymph nodes metastases. Forced expression of miR-375 in PC-3 cells, which display the lowest miR-375 levels among PCa cell lines, increased apoptosis and reduced invasion ability and cell viability. Intriguingly, in 22Rv1 cells, which displayed the highest miR-375 expression, knockdown experiments also attenuated the malignant phenotype. Gene ontology analysis implicated miR-375 in several key pathways deregulated in PCa, including cell cycle and cell differentiation. Moreover, CCND2 was identified as putative miR-375 target in PCa, confirmed by luciferase assay. Conclusions: A dual role for miR-375 in prostate cancer progression is suggested, highlighting the importance of cellular context on microRNA targeting.

Automatic musical instrument recognition for multimedia indexing

Trabalho apresentado no âmbito do Mestrado em Engenharia Informática, como requisito parcial para obtenção do grau de Mestre em Engenharia Informática

SAINT LOUIS ENCEPHALITIS VIRUS IN MATO GROSSO, CENTRAL-WESTERN BRAZIL

The dengue virus (DENV), which is frequently involved in large epidemics, and the yellow fever virus (YFV), which is responsible for sporadic sylvatic outbreaks, are considered the most important flaviviruses circulating in Brazil. Because of that, laboratorial diagnosis of acute undifferentiated febrile illness during epidemic periods is frequently directed towards these viruses, which may eventually hinder the detection of other circulating flaviviruses, including the Saint Louis encephalitis virus (SLEV), which is widely dispersed across the Americas. The aim of this study was to conduct a molecular investigation of 11 flaviviruses using 604 serum samples obtained from patients during a large dengue fever outbreak in the state of Mato Grosso (MT) between 2011 and 2012. Simultaneously, 3,433 female Culex spp. collected with Nasci aspirators in the city of Cuiabá, MT, in 2013, and allocated to 409 pools containing 1-10 mosquitoes, were also tested by multiplex semi-nested reverse transcription PCR for the same flaviviruses. SLEV was detected in three patients co-infected with DENV-4 from the cities of Cuiabá and Várzea Grande. One of them was a triple co-infection with DENV-1. None of them mentioned recent travel or access to sylvatic/rural regions, indicating that transmission might have occurred within the metropolitan area. Regarding mosquito samples, one pool containing one Culex quinquefasciatus female was positive for SLEV, with a minimum infection rate (MIR) of 0.29 per 1000 specimens of this species. Phylogenetic analysis indicates both human and mosquito SLEV cluster, with isolates from genotype V-A obtained from animals in the Amazon region, in the state of Pará. This is the first report of SLEV molecular identification in MT.

Caracterização do perfil de expressão de microRNAs na miocardiopatia hipertrófica

Dissertação para obtenção do Grau de Mestre em Genética Molecular e Biomedicina

Educação pela Arte. Uma experiência para dar sentido

Trabalho de Projeto apresentado para cumprimento dos requisitos necessários à obtenção do grau de Mestre em Ciências da Educação

Blocking tumor exosome release using nanovectorization systems

Exosomes are small membrane vesicles secreted by most cell types, either normal or malignant and are found in most body fluids such as saliva, plasma and breast milk. In the past decade, the interest in these vesicles has been growing more and more since it was found that besides their beneficial functions such as the removal of cellular debris and unnecessary proteins during cell maturation process, they can also interact with other cells and transfer information between them, thus helping diseases like cancer to progress. The present work intended to use gold nanoparticles as vehicles for gene silencing in an attempt to reduce the tumor-derived exosome secretion, regulated by Rab27a protein, and also aimed to compare the exosome secretion between two breast cell lines, MCF7 and MDA. Changes in RAB27A gene expression were measured by Real-time Quantitative PCR and it was revealed a decreased in RAB27A gene expression, as expected. Exosomes were isolated and purified by two different methods, ultracentrifugation and the commercial kit ExoQuick™ Solution, and further characterized using Western Blot analysis. ExoQuick™ Solution was proven to be the most efficient method for exosome isolation and it was revealed that MDA cells secrete more exosomes. Furthermore, the isolated MCF7-derived exosomes were placed together with a normal bronchial/tracheal epithelial cell line (BTEC) for an additional assay, which aimed to observe the uptake of exosomes by other cells and the exosomes’ capability of promoting cell-cell communication. This observation was made based on alterations in the expression levels of c-Myc and miR-21 genes and the fact that they both have an increased expression in BTEC cells incubated with tumor-derived exosomes when compared to control cells (without incubation with the exosomes) lead us to the conclusion that the exosome uptake and exchange of information between the exosomes and the normal cells did occurred.

MicroRNA-375 plays a dual role in prostate carcinogenesis

Background: Prostate cancer (PCa), a highly incident and heterogeneous malignancy, mostly affects men from developed countries. Increased knowledge of the biological mechanisms underlying PCa onset and progression are critical for improved clinical management. MicroRNAs (miRNAs) deregulation is common in human cancers, and understanding how it impacts in PCa is of major importance. MiRNAs are mostly downregulated in cancer, although some are overexpressed, playing a critical role in tumor initiation and progression. We aimed to identify miRNAs overexpressed in PCa and subsequently determine its impact in tumorigenesis. Results: MicroRNA expression profiling in primary PCa and morphological normal prostate (MNPT) tissues identified 17 miRNAs significantly overexpressed in PCa. Expression of three miRNAs, not previously associated with PCa, was subsequently assessed in large independent sets of primary tumors, in which miR-182 and miR-375 were validated, but not miR-32. Significantly higher expression levels of miR-375 were depicted in patients with higher Gleason score and more advanced pathological stage, aswellaswithregionallymph nodesmetastases. Forced expression of miR-375 in PC-3 cells, which display the lowest miR-375 levels among PCa cell lines, increased apoptosis and reduced invasion ability and cell viability. Intriguingly, in 22Rv1 cells, which displayed the highest miR-375 expression, knockdown experiments also attenuated the malignant phenotype. Gene ontology analysis implicated miR-375 in several key pathways deregulated in PCa, including cell cycle and cell differentiation. Moreover, CCND2 was identified as putative miR-375 target in PCa, confirmed by luciferase assay. Conclusions: A dual role for miR-375 in prostate cancer progression is suggested, highlighting the importance of cellular context on microRNA targeting.

Looking for mechanisms regulating lung growth in CDH: rat and human studies

Tese de Doutoramento em Ciências da Saúde

Acciones tróficas de GABA: implicancias en la diferenciación sexual del cerebro. Trophic actions of GABA: Implications for sexual differentiation of the brain.

En el hipotálamo en desarrollo, el ácido gamma-amino butírico (GABA) produce depolarización neuronal, pudiendo incluso disparar potenciales de acción y causar la apertura de canales de calcio dependientes de voltaje. Esto se debe a que la concentración intracelular de Cl- es alta respecto al medio extracelular, por lo que en reposo el potencial de equilibrio de GABA es más positivo que el potencial de membrana. A medida que el desarrollo transcurre, la concentración intracelular de Cl- disminuye y se produce un cambio en la respuesta de depolarizante (etapa excitatoria) a hiperpolarizante (etapa inhibitoria). Se ha demostrado que este cambio ocurre también en neuronas hipotalámicas in vitro. El dimorfismo sexual del cerebro de los vertebrados es consecuencia de la acción del estrógeno aromatizado a partir de andrógenos segregados por el testículo durante el "periodo crítico" del desarrollo cerebral. Evidencias previas de nuestro y otros laboratorios pusieron de manifiesto diferencias en el crecimiento y diferenciación de neuronas que no podían atribuirse a la acción hormonal, ya que ocurren antes que se inicie el brusco aumento de la secreción gonadal, alrededor del día 18 de desarrollo embrionario en la rata (E18). Además de las diferencias morfológicas, encontramos diferencias sexuales en la forma que las neuronas hipotalámicas responden a muscimol, un agonista específico del receptor GABAA. A los 9 días in vitro (9 DIV) la respuesta a muscimol fue hiperpolarizante (etapa inhibitoria) y además fue de mayor amplitud, área y duración en machos respecto a hembras. Esto nos indica que las neuronas provenientes de embriones machos son intrínsecamente diferentes a las de embriones hembra aún antes de la acción organizadora de los esteroides sexuales. En base a estas evidencias nos propusimos continuar nuestros estudios sobre la participación de GABA en la determinación de diferencias sexuales en el cerebro antes de la acción organizadora de los esteroides gonadales. Para ello, en cultivos de neuronas hipotalámicas de E16 separados por sexos, estudiaremos:- la respuesta a muscimol de las neuronas, en la etapa excitatoria (2 DIV) de la acción de GABA.- las composición de subunidades de los receptores GABAA en la etapa excitatoria/inhibitoria de la acción de GABA.- la participación de los receptores GABAA sobre el crecimiento neurítico.- la activación de la vía de las MAP quinasas por muscimol.- la participación de los receptores GABAA sobre el crecimiento axonal inducido por estradiol in vitro.Toda la metodología propuesta es de uso habitual en nuestro laboratorio e involucra herramientas de la electrofisiología y la biología celular-molecular; como patch-clamp, cultivo de neuronas hipotalámicas, Western blot, RT-PCR, entre otras. Esperamos encontrar diferencias sexuales en la amplitud, área y duración de la respuesta de las neuronas hipotalámicas al muscimol a los 2 DIV, y que éstas se deban a una diferente composición de subunidades del receptor GABAA. En cuanto a la participación del receptor GABAA en la neuritogenesis, esperamos encontrar mayor longitud neurítica en neuronas macho como así también una activación sexualmente dimórfica de la vía de las MAP quinasas. Además esperamosque la acción de un antagonista del receptor GABAA interfiera con la axogénesis inducida por estradiol in vitro, característica que muestra diferencia sexual también a favor de los machos, lo que reforzaría nuestra hipótesis. La importancia y originalidad de este proyecto reside en la evaluación de la participación del sistema GABAérgico en la determinación de características que durante el desarrollo, podrían estar involucradas en la determinación de diferencias sexuales permanentes en el cerebro adulto independientemente de la acción de los esteroides sexuales. Hasta la fecha, no ha sido evaluada la influencia de los receptores GABAA en la diferenciación sexual del cerebro antes de la acción organizadora de los esteroides gonadales.