Visual data mining: integrating machine learning with information visualization

Today, the data available to tackle many scientific challenges is vast in quantity and diverse in nature. The exploration of heterogeneous information spaces requires suitable mining algorithms as well as effective visual interfaces. Most existing systems concentrate either on mining algorithms or on visualization techniques. Though visual methods developed in information visualization have been helpful, for improved understanding of a complex large high-dimensional dataset, there is a need for an effective projection of such a dataset onto a lower-dimension (2D or 3D) manifold. This paper introduces a flexible visual data mining framework which combines advanced projection algorithms developed in the machine learning domain and visual techniques developed in the information visualization domain. The framework follows Shneiderman’s mantra to provide an effective user interface. The advantage of such an interface is that the user is directly involved in the data mining process. We integrate principled projection methods, such as Generative Topographic Mapping (GTM) and Hierarchical GTM (HGTM), with powerful visual techniques, such as magnification factors, directional curvatures, parallel coordinates, billboarding, and user interaction facilities, to provide an integrated visual data mining framework. Results on a real life high-dimensional dataset from the chemoinformatics domain are also reported and discussed. Projection results of GTM are analytically compared with the projection results from other traditional projection methods, and it is also shown that the HGTM algorithm provides additional value for large datasets. The computational complexity of these algorithms is discussed to demonstrate their suitability for the visual data mining framework.

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ICT adoption by logistics service providers:developing a learning agenda

Recent years have seen innovations in the logistics and freight transport industry in relation to Information and communication technologies (ICT) diffusion. The implementation of such technologies by third party logistics providers (3PLs) allows the real-time exchange of information between supply chain partners, thereby improving planning capability and customer service. However, the logistics and freight transport industry is lagging somewhat behind other sectors in ICT diffusion. In relation to the latter point, it is important to note that the dissemination of ICT in logistics and supply chain management (SCM) is shifting the 3PL industry to an increasingly knowledge-intensive approach. In this process, the role of learning becomes more central and an assessment of the impact of future ICT learning needs for the logistics providers is a strategic imperative. The aim of this paper is to assess the impact of ICT on logistics and freight transport industry in Italy and Ireland, and to identify learning needs for more effective ICT adoption in 3PLs.

A Taxonomy of Big Data for Optimal Predictive Machine Learning and Data Mining

Big data comes in various ways, types, shapes, forms and sizes. Indeed, almost all areas of science, technology, medicine, public health, economics, business, linguistics and social science are bombarded by ever increasing flows of data begging to be analyzed efficiently and effectively. In this paper, we propose a rough idea of a possible taxonomy of big data, along with some of the most commonly used tools for handling each particular category of bigness. The dimensionality p of the input space and the sample size n are usually the main ingredients in the characterization of data bigness. The specific statistical machine learning technique used to handle a particular big data set will depend on which category it falls in within the bigness taxonomy. Large p small n data sets for instance require a different set of tools from the large n small p variety. Among other tools, we discuss Preprocessing, Standardization, Imputation, Projection, Regularization, Penalization, Compression, Reduction, Selection, Kernelization, Hybridization, Parallelization, Aggregation, Randomization, Replication, Sequentialization. Indeed, it is important to emphasize right away that the so-called no free lunch theorem applies here, in the sense that there is no universally superior method that outperforms all other methods on all categories of bigness. It is also important to stress the fact that simplicity in the sense of Ockham’s razor non-plurality principle of parsimony tends to reign supreme when it comes to massive data. We conclude with a comparison of the predictive performance of some of the most commonly used methods on a few data sets.

Machine learning for large-scale wearable sensor data in Parkinson disease:concepts, promises, pitfalls, and futures

For the treatment and monitoring of Parkinson's disease (PD) to be scientific, a key requirement is that measurement of disease stages and severity is quantitative, reliable, and repeatable. The last 50 years in PD research have been dominated by qualitative, subjective ratings obtained by human interpretation of the presentation of disease signs and symptoms at clinical visits. More recently, “wearable,” sensor-based, quantitative, objective, and easy-to-use systems for quantifying PD signs for large numbers of participants over extended durations have been developed. This technology has the potential to significantly improve both clinical diagnosis and management in PD and the conduct of clinical studies. However, the large-scale, high-dimensional character of the data captured by these wearable sensors requires sophisticated signal processing and machine-learning algorithms to transform it into scientifically and clinically meaningful information. Such algorithms that “learn” from data have shown remarkable success in making accurate predictions for complex problems in which human skill has been required to date, but they are challenging to evaluate and apply without a basic understanding of the underlying logic on which they are based. This article contains a nontechnical tutorial review of relevant machine-learning algorithms, also describing their limitations and how these can be overcome. It discusses implications of this technology and a practical road map for realizing the full potential of this technology in PD research and practice. © 2016 International Parkinson and Movement Disorder Society.

Document understanding using data mining and machine learning techniques

With the explosive growth of the volume and complexity of document data (e.g., news, blogs, web pages), it has become a necessity to semantically understand documents and deliver meaningful information to users. Areas dealing with these problems are crossing data mining, information retrieval, and machine learning. For example, document clustering and summarization are two fundamental techniques for understanding document data and have attracted much attention in recent years. Given a collection of documents, document clustering aims to partition them into different groups to provide efficient document browsing and navigation mechanisms. One unrevealed area in document clustering is that how to generate meaningful interpretation for the each document cluster resulted from the clustering process. Document summarization is another effective technique for document understanding, which generates a summary by selecting sentences that deliver the major or topic-relevant information in the original documents. How to improve the automatic summarization performance and apply it to newly emerging problems are two valuable research directions. To assist people to capture the semantics of documents effectively and efficiently, the dissertation focuses on developing effective data mining and machine learning algorithms and systems for (1) integrating document clustering and summarization to obtain meaningful document clusters with summarized interpretation, (2) improving document summarization performance and building document understanding systems to solve real-world applications, and (3) summarizing the differences and evolution of multiple document sources.

Progettazione e prototipazione di un sistema di Data Stream Processing basato su Apache Storm

Con l’avvento di Internet, il numero di utenti con un effettivo accesso alla rete e la possibilità di condividere informazioni con tutto il mondo è, negli anni, in continua crescita. Con l’introduzione dei social media, in aggiunta, gli utenti sono portati a trasferire sul web una grande quantità di informazioni personali mettendoli a disposizione delle varie aziende. Inoltre, il mondo dell’Internet Of Things, grazie al quale i sensori e le macchine risultano essere agenti sulla rete, permette di avere, per ogni utente, un numero maggiore di dispositivi, direttamente collegati tra loro e alla rete globale. Proporzionalmente a questi fattori anche la mole di dati che vengono generati e immagazzinati sta aumentando in maniera vertiginosa dando luogo alla nascita di un nuovo concetto: i Big Data. Nasce, di conseguenza, la necessità di far ricorso a nuovi strumenti che possano sfruttare la potenza di calcolo oggi offerta dalle architetture più complesse che comprendono, sotto un unico sistema, un insieme di host utili per l’analisi. A tal merito, una quantità di dati così vasta, routine se si parla di Big Data, aggiunta ad una velocità di trasmissione e trasferimento altrettanto alta, rende la memorizzazione dei dati malagevole, tanto meno se le tecniche di storage risultano essere i tradizionali DBMS. Una soluzione relazionale classica, infatti, permetterebbe di processare dati solo su richiesta, producendo ritardi, significative latenze e inevitabile perdita di frazioni di dataset. Occorre, perciò, far ricorso a nuove tecnologie e strumenti consoni a esigenze diverse dalla classica analisi batch. In particolare, è stato preso in considerazione, come argomento di questa tesi, il Data Stream Processing progettando e prototipando un sistema bastato su Apache Storm scegliendo, come campo di applicazione, la cyber security.

Sistema di supporto all'analisi di genere nei curriculum vitae

Il sistema presentato all'interno di questo documento di tesi ha come obiettivo quello di essere un supporto all'analisi di genere, che risulta fondamentale per la risoluzione delle situazioni laddove il genere ancora rappresenta condizione di differenza. Attraverso l’utilizzo di un dizionario dati, costruito per contenere parole chiave su cui l’analisi si basa, è possibile effettuare lo studio dei contenuti di documenti strutturati. Il sistema è stato sviluppato mediante l'utilizzo di Nova Framework, jQuery, Bootstrap e Morris.js. Per quanto riguarda la gestione e memorizzazione dei dati sono stati utilizzati un database relazionale MySQL ed un insieme di file XML e JSON.

Studio di un sistema di comunicazione ad alimentazione risonante wireless.

L'elaborato tratta della progettazione di un sistema di alimentazione wireless risonante per i nodi sensori, strumenti fondamentali per il controllo delle strutture(Structural Health Monitoring). Esso si concentra sulla realizzazione di un convertitore flyback risonante (con circuito di snubber incluso per il main switch) in grado di fornire una tensione di 5 Volt in uscita a fronte di una corrente media massima sul carico di 800mA data una tensione di 12 volt in ingresso. Dopo aver introdotto il concetto di Wireless Power Transfer (WPT) e i principi fisici su cui esso poggia (induzione elettromagnetica e risonanza elettromagnetica), si presentano i modelli circuitali più utilizzati in questo ambito. Una volta illustrate le conoscenze allo stato dell'arte dell'accoppiamento induttivo risonante, si analizza il comportamento del modello scelto, al fine di evidenziare i vantaggi dell'utilizzo del circuito alla frequenza di risonanza. Sono state effettuate simulazioni con il simulatore LTspice come controprova. Si passa quindi a dimensionare i vari elementi del circuito a fronte delle specifiche stabilite. Grazie ai risultati ottenuti, si procede alla stesura del Bill Of Materials. La tesi si conclude presentando i possibili campi di ricerca e sviluppo del sistema di alimentazione.

Sistema di visione stereo su architettura ZYNQ

Lo scopo della tesi è creare un’architettura in FPGA in grado di ricavare informazioni 3D da una coppia di sensori stereo. La pipeline è stata realizzata utilizzando il System-on-Chip Zynq, che permette una stretta interazione tra la parte hardware realizzata in FPGA e la CPU. Dopo uno studio preliminare degli strumenti hardware e software, è stata realizzata l’architettura base per la scrittura e la lettura di immagini nella memoria DDR dello Zynq. In seguito l’attenzione si è spostata sull’implementazione di algoritmi stereo (rettificazione e stereo matching) su FPGA e nella realizzazione di una pipeline in grado di ricavare accurate mappe di disparità in tempo reale acquisendo le immagini da una camera stereo.

Progettazione e Sviluppo di un Sistema di Proactive Alerting all'interno di una piattaforma di Big Data Analytics

Il lavoro presentato in questo elaborato tratterà lo sviluppo di un sistema di alerting che consenta di monitorare proattivamente una o più sorgenti dati aziendali, segnalando le eventuali condizioni di irregolarità rilevate; questo verrà incluso all'interno di sistemi già esistenti dedicati all'analisi dei dati e alla pianificazione, ovvero i cosiddetti Decision Support Systems. Un sistema di supporto alle decisioni è in grado di fornire chiare informazioni per tutta la gestione dell'impresa, misurandone le performance e fornendo proiezioni sugli andamenti futuri. Questi sistemi vengono catalogati all'interno del più ampio ambito della Business Intelligence, che sottintende l'insieme di metodologie in grado di trasformare i dati di business in informazioni utili al processo decisionale. L'intero lavoro di tesi è stato svolto durante un periodo di tirocinio svolto presso Iconsulting S.p.A., IT System Integrator bolognese specializzato principalmente nello sviluppo di progetti di Business Intelligence, Enterprise Data Warehouse e Corporate Performance Management. Il software che verrà illustrato in questo elaborato è stato realizzato per essere collocato all'interno di un contesto più ampio, per rispondere ai requisiti di un cliente multinazionale leader nel settore della telefonia mobile e fissa.

Using Machine Learning to Enhance Software Tools for Internet Information Management

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Machine Learning-based Techniques to Address Spectral Distortions in Photon Counting X-ray Computed Tomography

Spectral CT using a photon counting x-ray detector (PCXD) shows great potential for measuring material composition based on energy dependent x-ray attenuation. Spectral CT is especially suited for imaging with K-edge contrast agents to address the otherwise limited contrast in soft tissues. We have developed a micro-CT system based on a PCXD. This system enables full spectrum CT in which the energy thresholds of the PCXD are swept to sample the full energy spectrum for each detector element and projection angle. Measurements provided by the PCXD, however, are distorted due to undesirable physical eects in the detector and are very noisy due to photon starvation. In this work, we proposed two methods based on machine learning to address the spectral distortion issue and to improve the material decomposition. This rst approach is to model distortions using an articial neural network (ANN) and compensate for the distortion in a statistical reconstruction. The second approach is to directly correct for the distortion in the projections. Both technique can be done as a calibration process where the neural network can be trained using 3D printed phantoms data to learn the distortion model or the correction model of the spectral distortion. This replaces the need for synchrotron measurements required in conventional technique to derive the distortion model parametrically which could be costly and time consuming. The results demonstrate experimental feasibility and potential advantages of ANN-based distortion modeling and correction for more accurate K-edge imaging with a PCXD. Given the computational eciency with which the ANN can be applied to projection data, the proposed scheme can be readily integrated into existing CT reconstruction pipelines.

Machine learning classification of surgical pathology reports and chunk recognition for information extraction noise reduction

Background and aims: Machine learning techniques for the text mining of cancer-related clinical documents have not been sufficiently explored. Here some techniques are presented for the pre-processing of free-text breast cancer pathology reports, with the aim of facilitating the extraction of information relevant to cancer staging.

Materials and methods: The first technique was implemented using the freely available software RapidMiner to classify the reports according to their general layout: ‘semi-structured’ and ‘unstructured’. The second technique was developed using the open source language engineering framework GATE and aimed at the prediction of chunks of the report text containing information pertaining to the cancer morphology, the tumour size, its hormone receptor status and the number of positive nodes. The classifiers were trained and tested respectively on sets of 635 and 163 manually classified or annotated reports, from the Northern Ireland Cancer Registry.

Results: The best result of 99.4% accuracy – which included only one semi-structured report predicted as unstructured – was produced by the layout classifier with the k nearest algorithm, using the binary term occurrence word vector type with stopword filter and pruning. For chunk recognition, the best results were found using the PAUM algorithm with the same parameters for all cases, except for the prediction of chunks containing cancer morphology. For semi-structured reports the performance ranged from 0.97 to 0.94 and from 0.92 to 0.83 in precision and recall, while for unstructured reports performance ranged from 0.91 to 0.64 and from 0.68 to 0.41 in precision and recall. Poor results were found when the classifier was trained on semi-structured reports but tested on unstructured.

Conclusions: These results show that it is possible and beneficial to predict the layout of reports and that the accuracy of prediction of which segments of a report may contain certain information is sensitive to the report layout and the type of information sought.