NONSPECIFIC INFECTIOUS DISEASES IN PREHISTORIC SAN PEDRO DE ATACAMA, NORTHERN CHILE

The region of San Pedro de Atacama, Northern Chile, has undergone several cultural and social changes after humans settled in Atacama Desert around 500 BC. The Atacameno people experienced the highest degree of social and cultural changes between 400 and 900 AD when they were assimilated into the Tiwanaku trade and political web that influenced most of the Central-Southern Andes. Under the influence of Tiwanaku, San Pedro de Atacama experienced its greatest economic development. Prior analyses of local human skeletal remains have shown a significant increase in the stature of the local population during the same period. In this paper, we investigate the impact of the Tiwanaku influence on the local epidemiological profile using the incidence of periostitis and osteomyelitis as indicators of biological stress. Surprisingly, the best epidemiological condition occurred during the final phase of influence of Tiwanaku (910-960 AD), and not during the apex influence (480-920 AD), as expected by the archaeological context. We suggest that population growth and aggregation may have counteracted the benefits of improved nutrition during the peak Tiwanaku influence. A severe drought occurred between 1,100 and 1,400 AD in Northern Chile. This could also explain the marked increase of bone infections in the post-Tiwanaku period (920-1,240 AD).

A New Species of Gymnotus (Gymnotiformes: Gymnotidae) from Rio Tiquie in Northern Brazil

Gymnotus tiquie, new species, is described from the Rio Tiquie, a tributary of the Uaupes (Vaupes) in the upper Negro basin, Amazonas, Brazil. The new species was collected in non-floodplain (terra firme) streams, where it occurs sympatrically and syntopically with two geographically widespread congeners, the type species of the genus, G. carapo, and G. coropinae. The new species is diagnosed by a unique combination of morphometric, meristic, and osteological traits, and by a characteristic color pattern in which the dark oblique pigment bands, diverse in shape and design, are divided into band-pairs along the length of the body, in which the band-pairs are often recurved (dorsally concave), more variable, and often reticulated in the abdominal region, and in which the pale inter-bands meet at the dorsal midline along most of the length of the body. Gymnotus tiquie is a member of the G. pantherinus species group, with which it shares the presence of one (vs. two) pore in the dorsolateral portion of the preopercle (except in G. pantanal and G. anguillaris), needle-shaped (vs. conical or arrowhead-shaped) teeth on the dentary and premaxilla, and a slender body (BD 5.6-10.6% HL vs. deep 8.7-13.5%, except G. chaviro, G. curupira, G. varzea, G. chimarrao, G. maculosus, G. henni, and G. inaequilabiatus that also have a slender body). Gymnotus tiquie is most similar in overall appearance to G. cataniapo of the upper Orinoco. These two species share three unique features within the G. pantherinus group: dark band-pairs with wavy irregular margins along the length of the body, a long body cavity with 45 or more pre-caudal vertebrae, and a darkly pigmented membrane in the caudal region of the anal fin.

Holocenic proxies of sedimentary organic matter and the evolution of Lake Arari-Amazon Region

Four sediment cores were sampled from Lake Arari, located on Marajo Island at the mouth of the Amazon River. The island's vegetation cover is composed mainly of Amazon coastal forest, herbaceous and varzea vegetation. The integration of data on sedimentary structures, pollen, carbon and nitrogen isotope records, C/N ratios and radiocarbon ages allowed the identification of changes in vegetation and the sources of organic matter accumulated in the lake during the Holocene. The data indicate a relatively high flow energy, marine water influence and the presence of mangroves during the lagoon phase between 8990 and 8690 cal yr B.P. and 2310-2230 cal yr B.P. Between 2310 and 2230 cal yr B.P. and similar to 1000 cal yr B.P., the flow energy decreased and the mangroves were replaced by herbaceous vegetation following the decline in marine influence, likely due to the increase in freshwater river discharge. During the last 1000 years, Lake Arari was established in association with the expansion of herbaceous vegetation and the dominance of freshwater algae. (C) 2011 Elsevier BM. All rights reserved.

TDEM survey in an area of seismicity induced by water wells in Parana sedimentary basin, Northern Sao Paulo State, Brazil

This article presents TDEM results from an area with recent induced shallow seismicity. The purpose was to do a geoelectrical mapping of sedimentary and fractured basaltic aquifers for better understanding of the hydrogeologic setting. The study area is in the Parana basin where flood basalts are overlain by sedimentary units near the city of Bebedouro, northern Sao Paulo State, Brazil. 86 TDEM soundings were acquired in an area of 90 km(2) in the Andes and Botafogo study areas. The soundings were chosen next to wells for calibration, and also along profiles crossing the seismically active areas. 1-D interpretation results showed the general geoelectrical stratigraphy of this part of the Parana basin. The upper geoelectrical layer is the shallow sedimentary aquifer (Adamantina formation) with less than 80 m thickness. The second geoelectrical layer contains the upper basalts of the Serra Geral formation at about 60-80 m depths. A saturated fractured basalt zone between 100 and 300 m depths was identifiable on various TDEM soundings. This depth range corresponds to the range of hypocentral depths for more than 3000 micro-earthquakes in this area. The lower basalt layer was estimated to lie between 400 and 650 m depth. The deepest geoelectrical layer detected by various TDEM soundings corresponds to the Botucatu sandstone (Guarani aquifer). Results suggest that the high-discharge wells are located in the fractured zone in the middle basalt of the Serra Geral formation. There is a good correlation between seismically active areas, high discharge wells (>190 m(3)/h), and fracture zones in the middle basalt. The results reinforce the hypothesis that the shallow seismic activity in the Bebedouro region is being triggered by high rates of groundwater withdrawal. (C) 2012 Elsevier B.V. All rights reserved.

Responses of transplanted native tree species to invasive alien grass removals in an abandoned cattle pasture in the Lacandon region, Mexico

We tested the early performance of 16 native early-, mid-, and late-successional tree species in response to four intensities of grass removal in an abandoned cattle pasture dominated by the introduced, invasive African grass, Cynodon plectostachyus, within the Lacandon rainforest region, southeast Mexico. The increase in grass removals significantly improved the performance of many species, especially of early-and mid-successional species, while performance of late-successional species was relatively poor and did not differ significantly among treatments. Good site preparation and at least one additional grass removal four months after seedling transplant were found to be essential; additional grass removals led to improved significantly performance of saplings in most cases. In order to evaluate the potential of transplanting tree seedlings successfully in abandoned tropical pastures, we developed a "planting risk index", combining field performance measurements and plantation cost estimations. Our results showed a great potential for establishing restoration plantings with many early-and mid-successional species. Although planting risk of late-successional species was considered high, certain species showed some possibilities of acclimation after 18 months and should be considered in future plantation arrangements in view of their long-term contributions to biodiversity maintenance and also to human welfare through delivery of ecosystem services. Conducting a planting risk analysis can help avoid failure of restoration strategies involving simultaneous planting of early-, mid-, and late-successional tree species. This in turn will improve cost-effectiveness of initial interventions in large-scale, long-term restoration programs.

Testing the Performance of Fourteen Native Tropical Tree Species in Two Abandoned Pastures of the Lacandon Rainforest Region of Chiapas, Mexico

The rainforest of Mexico has been degraded and severely fragmented, and urgently require restoration. However, the practice of restoration has been limited by the lack of species-specific data on survival and growth responses to local environmental variation. This study explores the differential performance of 14 wet tropical early-, mid- or late-successional tree species that were grown in two abandoned pastures with contrasting land-use histories. After 18 months, seedling survival and growth of at least 7 of the 14 tree species studied were significantly higher in the site with a much longer history of land use (site 2). Saplings of the three early-successional species showed exceptional growth rates. However, differences in performance were noted in relation to the differential soil properties between the experimental sites. Mid-successional species generally showed slow growth rates but high seedling survival, whereas late-successional species exhibited poor seedling survival at both the study sites. Stepwise linear regressions revealed that the species integrated response index combining survivorship and growth measurements, was influenced mostly by differences in soil pH between the two abandoned pastures. Our results suggest that local environmental variation among abandoned pastures of contrasting land-use histories influences sapling survival and growth. Furthermore, the similarity of responses among species with the same successional status allowed us to make some preliminary site and species-specific silvicultural recommendations. Future field experiments should extend the number of species and the range of environmental conditions to identify site generalists or more narrowly adapted species, that we would call sensitive.

Survey of hearing disorders in an urban population in Rondonia, Northern Brazil

OBJECTIVE: To identify the prevalence of hearing loss for the population in the urban area. METHODS: A cross-sectional household survey based on the World Health Organization Ear and Hearing Disorders Survey Protocol was conducted in 298 households in the urban area of Monte Negro, Rondonia, Northern Brazil, from 2005 to 2007. Ear examinations, behavioral audiometry and pure tone audiometry were conducted on 577 individuals. RESULTS: The results showed that 3.8% (95%CI 2.17;5.45) of population were classifi ed in the disabling hearing impairment category. The prevalence of moderate hearing impairment was 3.4%; severe impairment was 0.4%; and profound hearing impairment was not found. CONCLUSIONS: The impairing hearing loss prevalence found in this study is within of the international prevalence for this level of hearing loss and smaller than observed in a previous study in the South region of Brazil.

Norm and difference : Stone Age dietary practice in the Baltic region

Stone Age research on Northern Europe frequently makes gross generalizations about the Mesolithic and Neolithic, although we still lack much basic knowledge on how the people lived. The transition from the Mesolithic to the Neolithic in Europe has been described as a radical shift from an economy dominated by marine resources to one solely dependent on farming. Both the occurrence and the geographical extent of such a drastic shift can be questioned, however. It is therefore important to start out at a more detailed level of evidence in order to present the overall picture, and to account for the variability even in such regional or chronological overviews. Fifteen Stone Age sites were included in this study, ranging chronologically from the Early Mesolithic to the Middle or Late Neolithic, c. 8300–2500 BC, and stretching geographically from the westernmost coast of Sweden to the easternmost part of Latvia within the confines of latitudes 55–59° N. The most prominent sites in terms of the number of human and faunal samples analysed are Zvejnieki, Västerbjers and Skateholm I–II. Human and faunal skeletal remains were subjected to stable carbon and nitrogen isotope analysis to study diet and ecology at the sites. Stable isotope analyses of human remains provide quantitative information on the relative importance of various food sources, an important addition to the qualitative data supplied by certain artefacts and structures or by faunal or botanical remains. A vast number of new radiocarbon dates were also obtained. In conclusion, a rich diversity in Stone Age dietary practice in the Baltic Region was demonstrated. Evidence ranging from the Early Mesolithic to the Late Neolithic show that neither chronology nor location alone can account for this variety, but that there are inevitably cultural factors as well. Food habits are culturally governed, and therefore we cannot automatically assume that people at similar sites will have the same diet. Stable isotope studies are very important here, since they tell us what people actually consumed, not only what was available, or what one single meal contained. We should not be deceived in inferring diet from ritually deposited remains, since things that were mentally important were not always important in daily life. Thus, although a ritual and symbolic norm may emphasize certain food categories, these may in fact contribute very little to the diet. By the progress of analysis of intra-individual variation, new data on life history changes have been produced, revealing mobility patterns, breastfeeding behaviour and certain dietary transitions. The inclusion of faunal data has proved invaluable for understanding the stable isotope ecology of a site, and thereby improve the precision of the interpretations of human stable isotope data. The special case of dogs, though, demonstrates that these animals are not useful for inferring human diet, since, due to the number of roles they possess in human society, dogs could deviate significantly from humans in their diet, and in several cases have been proved to do so. When evaluating radiocarbon data derived from human and animal remains from the Pitted-Ware site of Västerbjers on Gotland, the importance of establishing the stable isotope ecology of the site before making deductions on reservoir effects was further demonstrated. The main aim of this thesis has been to demonstrate the variation and diversity in human practices, challenging the view of a “monolithic” Stone Age. By looking at individuals and not only at populations, the whole range of human behaviour has been accounted for, also revealing discrepancies between norm and practice, which are frequently visible both in the archaeological record and in present-day human behaviour.

Glaciers and climate in northern Sweden during the 19th and 20th century

Our understanding of the climate of northern Sweden during the late Holocene is largely dependent on proxy-data series. These datasets remain spatially and temporally sparse and instrumental series are rare prior to the mid 19th century. Nevertheless, the glaciology and paleo-glaciology of the region has a strong potential significance for the exploration of climate change scenarios, past and future. The aim of this thesis is to investigate the 19th and 20th century climate in the northern Swedish mountain range. This provides a good opportunity to analyse the natural variability of the climate before the onset of the industrial epoch. Developing a temporal understanding of fluctuations in glacier front positions and glacier mass balance that is linked to a better understanding of their interaction and relative significance to climate is fundamental in the assessment of past climate. I have chosen to investigate previously unexplored temperature data from northern Sweden from between 1802 and 1860 and combined it with a temperature series from a synoptic station in Haparanda, which began operation in 1859, in order to create a reliable long temperature series for the period 1802 to 2002. I have also investigated two different glaciers, Pårteglaciären and Salajekna, which are located in different climatic environments. These glaciers have, from a Swedish perspective, long observational records. Furthermore, I have investigated a recurring jökulhlaup at the glacier Sälkaglaciären in order to analyse glacier-climate relationships with respect to the jökulhlaups. A number of datasets are presented, including: glacier frontal changes, in situ and photogrammetric mass balance data, in situ and satellite radar interferometry measurements of surface velocity, radar measurements, ice volume data and a temperature series. All these datasets are analysed in order to investigate the response of the glaciers to climatic stimuli, to attribute specific behaviour to particular climates and to analyse the 19th and 20th century glacier/climate relationships in northern Sweden. The 19th century was characterized by cold conditions in northern Sweden, particularly in winter. Significant changes in the amplitude of the annual temperature cycle are evident. Through the 19th century there is a marked decreasing trend in the amplitude of the data, suggesting a change towards a prevalence of maritime (westerly) air masses, something which has characterised the 20th century. The investigations on Salajekna support the conclusion that the major part of the 19th century was cold and dry. The 19th century advance of Salajekna was probably caused by colder climate in the late 18th and early 19th centuries, coupled with a weakening of the westerly airflow. The investigations on Pårteglaciären show that the glacier has a response time of ~200 years. It also suggests that there was a relatively high frequency of easterly winds providing the glacier with winter precipitation during the 19th century. Glaciers have very different response times and are sensitive to different climatic parameters. Glaciers in rather continental areas of the Subarctic and Arctic can have very long response times because of mass balance considerations and not primarily the glacier dynamics. This is of vital importance for analyzing Arctic and Subarctic glacier behaviour in a global change perspective. It is far from evident that the behaviour of the glacier fronts today reflects the present climate.

Mountain centered icefields in northern Scandinavia

Mountain centered glaciers have played a major role throughout the last three million years in the Scandinavian mountains. The climatic extremes, like the present warm interglacial or cold glacial maxima, are very short-lived compared to the periods of intermediate climate conditions, characterized by the persistence of mountain based glaciers and ice fields of regional size. These have persisted in the Scandinavian mountains for about 65% of the Quaternary. Mountain based glaciers thus had a profound impact on large-scale geomorphology, which is manifested in large-scale glacial landforms such as fjords, glacial lakes and U-shaped valleys in and close to the mountain range. Through a mapping of glacial landforms in the northern Scandinavian mountain range, in particular a striking set of lateral moraines, this thesis offers new insights into Weichselian stages predating the last glacial maximum. The aerial photograph mapping and field evidence yield evidence that these lateral moraines were overridden by glacier ice subsequent to their formation. The lateral moraines were dated using terrestrial cosmogenic nuclide techniques. Although the terrestrial cosmogenic nuclide signature of the moraines is inconclusive, an early Weichselian age is tentatively suggested through correlations with other landforms and stratigraphical archives in the region. The abundance and coherent spatial pattern of the lateral moraines also allow a spatial reconstruction of this ice field. The ice field was controlled by topography and had nunataks protruding also where it was thickest close to the elevation axis of the Scandinavian mountain range. Outlet glaciers discharged into the Norwegian fjords and major valleys in Sweden. The process by which mountain based glaciers grow into an ice sheet is a matter of debate. In this thesis, a feedback mechanism between debris on the ice surface and ice sheet growth is presented. In essence, the growth of glaciers and ice sheets may be accelerated by an abundance of debris in their ablation areas. This may occur when the debris cover on the glacier surface inhibits ablation, effectively increasing the glaciers mass balance. It is thus possible that a dirty ablation area may cause the glacier to advance further than a clean glacier under similar conditions. An ice free period of significant length allows soil production through weathering, frost shattering, and slope processes. As glaciers advance through this assemblage of sediments, significant amounts of debris end up on the surface due to both mass wastage and subglacial entrainment. Evidence that this chain of events may occur, is given by large expanses of hummocky moraine (local name Veiki moraine) in the northern Swedish lowlands. Because the Veiki moraine has been correlated with the first Weichselian advance following the Eemian, it implies a heavily debris charged ice sheet emanating from the mountain range and terminating in a stagnant fashion in the lowlands.

Anthropogenic CO2 in the Azores region

The AZORES-I cruise was conducted in August 1998, spanning the length of three latitudinal large-scale sections at 22, 28 and 32ºW. The oceanic carbon system was oversampled by measuring total alkalinity, total inorganic carbon and pH. It is thus possible to estimate anthropogenic CO2 (CANT) and to investigate its relationship with the main water masses that are present. CANT is calculated using the latest back-calculation techniques: jCTº and TrOCA methods. Although the two approaches produce similar vertical distributions, the results of the TrOCA method show higher CANT variability and produce higher inventories than those of the jCTº method. The large proportion of Mediterranean Water found in the northern part of the study area is the main cause of the observed increase northwards of CANT inventories. Changes in CANT inventories between 1981 and 2004 are evaluated using data from the TTO-NAS, OACES-93 and METEOR-60/5 cruises. According to the jCTº and TrOCA approaches, the average long-term rates of CANT inventory change are 1.32±0.11 mol C m-2 y-1 (P=0.008) and 1.18±0.16 mol C m-2 y-1 (P=0.018), respectively. During the 1993-1998 a significant increase in the CANT storage rate was detected by the jCTº method. It is thought that this stems directly from the enhanced Labrador Seawater formation after the increased advection observed at the time.

Meridional and zonal changes in water properties along the continental slope off central and northern Chile

[EN] The Humboldt-09 cruise covered a narrow meridional band along the Chilean continental slope (44?23º S). Here we use physical and biochemical data from a long meridional section (4000 km) and three short zonal sections (100 km) to describe the distribution of the different water masses found in this region. Six water masses were identified: Subantarctic Water (SAAW), Summer Subantarctic Water (SSAW), Subtropical Water (STW), Equatorial Subsurface Water (ESSW), Antarctic Intermediate Water (AAIW), and Pacific Deep Water (PDW). For the first time, a novel set of source water mass properties (or water types) is introduced for SSAW, and nutrient and dissolved oxygen water types are proposed for all the water masses. Optimum multiparameter (OMP) analysis was used through an iterative process to obtain a sound definition of the water types that minimizes the residuals of the method. Both the classic OMP and the quasi-extended OMP models reproduced the data rather well. Finally, the spatial distribution of the different water masses was calculated with the quasi-extended OMP, which is not influenced by the respiration of organic matter. The distribution of the different water masses is presented over the meridional and zonal transects and in property-property diagrams. A smooth meridional transition from subantarctic to tropical and equatorial water masses is observed in this area. This transition takes place in surface, central, and intermediate waters over distances of the order of 1000 km. The meridional transition contrasts with the abrupt zonal changes found in the cross-slope direction, which are of comparable magnitude but over distances of the order of 100 km. Both AAIW and SAAW (fresh and well oxygenated) partially mix with the hypoxic ESSW and, therefore, play an important role in the ventilation of the southern part of the oxygen minimum zone.

Vergleichende Sequenzierung und Analyse eines ca. 250 kb großen Bereiches der humanen Chromosomenregion 11p15.3 und der homologen Region der Maus

In der vorliegenden Dissertation wurde im Rahmen des Deutschen Humangenomprojektes ein 243 966 bp grosser genomischer Bereich um das humane Gen WEE1 in der Chromsomenregion 11p15.3 und der 192 519 bp lange orthologe Bereich auf dem murinen Chromosom 7 anhand von PAC-Klonen sequenziert. Der Sequenzierung ging die Erstellung von PAC-Klon-Contigs voraus, welche die zu untersuchenden genomischen Regionen in Mensch und Maus lückenlos abdecken. Nach der Etablierung von Hochdurchsatzmethoden zur Probenherstellung und –verarbeitung wurden die Konsensussequenzen in Mensch und Maus ermittelt. Zur Identifizierung aller Gene wurde die Sequenz einer Kombination von Datenbanksuchen, computergestützten Exonvorhersageprogrammen und der komparativen Sequenzanalyse mit Hilfe von Dotplot- und PIP-Darstellungen unterzogen. In den untersuchten genomischen Regionen der beiden Spezies konnten insgesamt drei orthologe Genpaare (WEE1, ZNF143 und RanBP7) und ein humanes Pseudogen (Pseudogen L23a) lokalisiert werden.Das am Zellzyklus beteiligte WEE1-Gen, das auch als Ausgangspunkt für die Isolierung der PAC-Klone zur Erstellung der genomischen Contigs diente, ist sowohl in der humanen als auch in der murinen Sequenz vollständig enthalten. Hierbei konnte die publizierte mRNA-Sequenz des murinen Wee1-Gens, unterstützt von EST-Daten, korrigiert werden. Sowohl das ZNF143-Gen als auch sein murines Orthologes, mStaf, sind in den genomischen Sequenzen vollständig enthalten. Somit muss die in 11p15.4 publizierte Lokalisation des ZNF143-Gens in die Region 11p15.3 berichtigt werden. Weiterhin wurde die cDNA-Sequenz des humanen ZNF143-Gens um ein bisher noch nicht beschriebenes Exon im 5´-Bereich und die des murinen mStaf-Gens um knapp 170 bp im 3´-Bereich verlängert. Der in der ZNF143-mRNA-Sequenz publizierte 3´-UTR konnte in der vorliegenden genomischen Sequenz nicht lokalisiert werden. Es scheint sich hierbei um ein von Chromosom 14 stammendes Klonierungsartefakt zu handeln. Das im Menschen beschriebene RanBP7-Gen wurde mit Ausnahme des Exons 1 vollständig in der untersuchten genomischen Sequenz lokalisiert. Über Datenbank-Suchen konnte ein EST-Klon identifiziert werden, der die bisher bekannte RanBP7-mRNA um knapp 2,4 kb in den 3´-Bereich hinein verlängert. Eine Bestätigung der Transkriptlänge erfolgte über Northern Blot-Analyse. Das bisher unbekannte murine Orthologe, mRanBP7, konnte aufgrund komparativer Sequenzanalyse und Datenbanksuchen in der vorliegenden genomischen Maus-Sequenz ermittelt werden, wobei die Sequenz über RT-PCR-Experimente generiert und die Transkriptlänge durch Northern Blot-Analyse bestätigt werden konnte. Neben den drei bekannten Genen konnte in der humanen Sequenz darüber hinaus ein Pseudogen (Pseudogen L23a) identifiziert werden, welches über einen Bereich von 549 bp eine 92%-ige Sequenzidentität zu dem humanen ribosomalen Protein L23a aufweist und die typischen, 13 bp langen direkten Sequenzwiederholungen besitzt. Acht der insgesamt 10 Nukleotidaustausche führen im Vergleich zu L23a zu einem Aminosäureaustausch, wodurch u. a. ein vorzeitiger Translations-Stop bedingt ist. Die komparative Sequenzanalyse deckte neben den konservierten Gen-Bereichen zwischen Mensch und Maus insgesamt vier konservierte Bereiche auf. Bei der Analyse dieser Regionen mit Hilfe von EST-Daten bzw. Exonvorhersageprogrammen konnte jedoch keiner dieser vier konservierten Regionen eine eindeutige kodierende Funktion nachgewiesen werden. Es könnte sich hierbei somit um funktionell bedeutsame regulatorische Regionen handeln. Die Analysen der ermittelten genomischen Sequenzen zeigten, dass der Anteil an repetitiven Elementen mit 55,26% in der untersuchten humanengenomischen Region gegenüber der murinen Sequenz (41,87%) deutlich erhöht ist. Durch die vergleichende Sequenzanalyse können Artefakte in den EST-analysiert und somit die Zuverlässigkeit der verwendeten Exonvorhersage-Programme optimiert werden.Die Ergebnisse der vorliegenden Arbeit zeigen, dass die Kombination von komparativer Sequenzanalyse, Datenbank-Suchen und Exonvorhersageprogrammen die Sicherheit bei der Identifikation von kodierenden Sequenzen stark verbessert.

Bedeutung der viralen IE4-Region für die Genexpression und Replikation des humanen Cytomegalovirus

Das humane Cytomegalovirus (HCMV) ist ein fakultativ-pathogener Erreger, der bei Patienten mit geschwächter oder unausgereifter Immunabwehr schwerwiegende Erkrankungen hervorrufen kann. Wie alle Herpesviren zeigt das HCMV eine streng koordinierte Expression viraler Gene, die in eine „sehr frühe-“ (IE), „frühe “ (E) und „späte-“ (L) Phase unterteilt werden kann. Die Produkte der IE-Gene IE1 und IE2 sind für die Expression der frühen Gene und somit für die Initiation der viralen DNA-Replikation entscheidend. Sie greifen gleichzeitig in den zellulären Stoffwechsel ein und schaffen damit optimale Vorraussetzungen für die virale Vermehrung. Zu Beginn dieser Arbeit war bekannt, dass HCMV in lytisch infizierten Zellen ein abundantes IE-Transkript von 5 kb (IE4-RNA) exprimierte, dessen Funktion bislang unklar war. Ältere Publikationen deuteten darauf hin, dass die IE4-Genregion an der Transformation eukaryonter Zellen beteiligt sein könnte. Neuere Arbeiten zeigten, dass es sich bei diesem IE4-Transkript um ein metabolisch stabiles Intron handelt. Im Rahmen dieser Arbeit sollte zunächst geklärt werden, ob die IE4-Genregion ein Protein kodiert. In der Folge sollten mit viralen Deletionsmutanten Hinweise auf die biologische Funktion des IE4-Bereichs erarbeitet werden. Durch Northern Blot Analysen und cDNA-Klonierungsexperimente konnte eine Reihe neuer Spleiß-Varianten der IE4-RNA identifiziert werden. Durch Sequenzanalysen wurde gezeigt, dass diese Transkripte keine längeren offenen Leserahmen enthalten. Zusammen mit bereits publizierten Erkenntnissen, kann aus diesen Ergebnissen mit hoher Wahrscheinlichkeit geschlossen werden, dass die IE4 Region nicht für ein Protein kodiert. Zur Analyse der biologischen Funktion der IE4-Region wurde das DNA-Genom des HCMV gezielt mutagenisiert. Eine phänotypische Analyse der entsprechenden Viren mittels Reportergen-Tests und quantitativer RealTime RT-PCR zeigte, dass einige der Mutanten eine verringerte Expression früher Gene aufwiesen, die mit einer Beeinträchtigung ihrer Replikationsfähigkeit in Fibroblastenkulturen korrelierte. Dabei war die Ausbildung eines Phänotyps jedoch von dem genetischen Hintergrund des verwendeten viralen Ausgangsstammes abhängig. Auffällig war, dass phänotypische Veränderungen nur bei solchen Mutanten sichtbar wurden, die auf der Grundlage des Laborstammes Ad169 des HCMV generiert worden waren. Die nachfolgende Analyse der Ausgangsstämme ergab deutliche Unterschiede in der IE-Genexpression. Die Ergebnisse dieser Arbeit zeigen somit, dass die IE4-RNA mit hoher Wahrscheinlichkeit nicht für ein Protein kodiert, aber bei limitierender Expression der essentiellen Regulatoren IE1 und IE2 die frühe lytische Genexpression stimuliert. Die Ergebnisse dieser Arbeit stellen die Grundlage für nachfolgende Untersuchungen zur Aufklärung der molekularen Funktion der IE4-RNA im Rahmen der lytischen Infektion des HCMV dar.

Climate Change Adaptation Tool for Transportation: Mid-Atlantic Region Case Study

Transportation has contributed to climate change and will most likely be impacted by changes in sea level, temperature, precipitation, and wind, for example. As the risk of climate change impacts become more imminent, pressure for adaptation within transportation agencies to address these impacts continues to rise. The most logical strategy is to integrate consideration of adaptation projects into the long-range transportation planning (LRTP) process. To do this, tools and experience are needed to assist transportation agencies. The Climate Change Adaptation Tool for Transportation (CCATT) is a step-by-step method to evaluate climate change scenarios and impacts, inventory at-risk existing and proposed infrastructure, and assess mitigation practices to identify supporting adaptation efforts. This paper focuses on the application of CCATT to the Mid-Atlantic region using a case study on the Wilmington Area Planning Council (WILMAPCO), the Metropolitan Planning Organization for northern Delaware. The results of the application and case study demonstrate the importance of climate change adaptation practices in long-range transportation planning. DOI: 10.1061/(ASCE)TE.1943-5436.0000515. (C) 2013 American Society of Civil Engineers.