A rede de marcação e recaptura: o caso de borboletas do gênero heliconius

(The Mark and Recapture Network: a Heliconius case study). The current pace of habitat destruction, especially in tropical landscapes, has increased the need for understanding minimum patch requirements and patch distance as tools for conserving species in forest remnants. Mark recapture and tagging studies have been instrumental in providing parameters for functional models. Because of their popularity, ease of manipulation and well known biology, butterflies have become model in studies of spatial structure. Yet, most studies on butterflies movement have focused on temperate species that live in open habitats, in which forest patches are barrier to movement. This study aimed to view and review data from mark-recapture as a network in two species of butterfly (Heliconius erato and Heliconius melpomene). A work of marking and recapture of the species was carried out in an Atlantic forest reserve located about 20km from the city of Natal (RN). Mark recapture studies were conducted in 3 weekly visits during January-February and July-August in 2007 and 2008. Captures were more common in two sections of the dirt road, with minimal collection in the forest trail. The spatial spread of captures was similar in the two species. Yet, distances between recaptures seem to be greater for Heliconius erato than for Heliconius melpomene. In addition, the erato network is more disconnected, suggesting that this specie has shorter traveling patches. Moving on to the network, both species have similar number of links (N) and unweighed vertices (L). However, melpomene has a weighed network 50% more connections than erato. These network metrics suggest that erato has more compartmentalized network and restricted movement than melpomene. Thus, erato has a larger number of disconnected components, nC, in the network, and a smaller network diameter. The frequency distribution of network connectivity for both species was better explained by a Power-law than by a random, Poissom distribution, showing that the Power-law provides a better fit than the Poisson for both species. Moreover, the Powerlaw erato is much better adjusted than in melpomene, which should be linked to the small movements that erato makes in the network

Association of matrix metalloproteinase-8 gene variation with breast cancer prognosis

Animal and cell studies indicate an inhibitory effect of matrix metalloproteinase-8 (MMP8) on tumorigenesis and metastasis. We investigated whether MMP8 gene variation was associated with breast cancer metastasis and prognosis in humans. We first studied nine tagging single nucleotide polymorphisms (SNP) in the MMP8 gene in 140 clinically and pathologically well-characterized breast cancer patients. Four of the SNPs were found to be associated with lymph node metastasis, the most pronounced being a promoter SNP (rs11225395) with its minor allele (T) associating with reduced susceptibility to lymph node metastasis (P = 0.02). This SNP was further evaluated for association with cancer relapse and survival among a cohort of similar to 1,100 breast cancer patients who had been followed for cancer recurrence and mortality for a median of 7.1 years. The T allele was associated with reduced cancer relapse and greater survival, particularly among patients with earlier stage cancer. Among patients of tumor-node-metastasis stage 0 to 11, the adjusted hazard ratio of disease-free survival was 0.7 [95% confidence interval (95% CI), 0.5-0.9] for patients carrying T allele compared with those homozygous for the C allele (P = 0.02). In vitro experiments showed that the T allele had higher promoter activity than the C allele in breast cancer cells. Electrophoretic mobility shift assays showed binding of nuclear proteins to the DNA sequence at the SNP site of the T allele but not that of the C allele. The data suggest that MMP8 gene variation may influence breast cancer prognosis and support the notion that MMP8 has an inhibitory effect on cancer metastasis.

Measurement of the p(p)over-bar -> t(t)over-bar + X production cross section at root s=1.96 TeV in the fully hadronic decay channel

A measurement of the top quark pair production cross section in proton antiproton collisions at an interaction energy of root s=1.96 TeV is presented. This analysis uses 405 +/- 25 pb(-1) of data collected with the D0 detector at the Fermilab Tevatron Collider. Fully hadronic t (t) over bar decays with final states of six or more jets are separated from the multijet background using secondary vertex tagging and a neural network. The t (t) over bar cross section is measured as sigma(t (t) over bar)=4.5(-1.9)(+2.0)(stat)(-1.1)(+1.4)(syst)+/- 0.3(lumi) pb for a top quark mass of m(t)=175 GeV/c(2).

Study of the discovery potential of light custodians in a clean decay channel at the LHC

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

b-Jet identification in the D0 experiment

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Measurement of the forward-backward charge asymmetry in top-quark pair production

We present the first measurement of the integrated forward-backward charge asymmetry in top-quark-top-antiquark pair (t (t) over bar) production in proton-antiproton (p (p) over bar) collisions in the lepton+jets final state. Using a b-jet tagging algorithm and kinematic reconstruction assuming t (t) over bar +X production and decay, a sample of 0.9 fb(-1) of data, collected by the D0 experiment at the Fermilab Tevatron Collider, is used to measure the asymmetry for different jet multiplicities. The result is also used to set upper limits on t (t) over bar +X production via a Z' resonance.

Measurement of the t(t)over-bar production cross section in p(p)over-bar collisions at root s=1.96 TeV

We measure the t (t) over bar production cross section in p (p) over bar collisions at root s = 1.96 TeV in the lepton + jets channel. Two complementary methods discriminate between signal and background: b tagging and a kinematic likelihood discriminant. Based on 0.9 fb(-1) of data collected by the D0 detector at the Fermilab Tevatron Collider, we measure sigma(t (t) over bar) = 7.62 +/- 0.85 pb, assuming the current world average m(t) = 172.6 GeV. We compare our cross section measurement with theory predictions to determine a value for the top-quark mass of 170 +/- 7 GeV.

Selection of radio transmitter and attachment method for post-release monitoring of captive-bred reintroduced Red-billed Curassow Crax blumenbachii, Brazil

Long-term monitoring of reintroduced individuals is a central component of many endangered species reintroduction programs. Radio-telemetry techniques are rarely used to monitor reintroduced captive-bred Cracids and few data exist regarding possible adverse effects of radio-tagging Cracids. In this study, we identify an appropriate radio transmitter design and develop a suitable attachment method that minimizes anthropogenic influence and enables long-term, post-release monitoring (2-3 years) of reintroduced captive-bred Red-billed Curassows in the Brazilian Atlantic Rainforest. We also review studies about the effects of different VHF radio transmitter models on survival, reproduction, behavior, and physiology of Galliformes.

Spliceosomal Proteomics in Trypanosoma brucei Reveal New RNA Splicing Factors

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Localização sub-celular de proteínas marcadas com GFP em Xanthomonas axonopodis pv. citri por microscopia de fluorescência

Pós-graduação em Ciências Biológicas (Microbiologia Aplicada) - IBRC

Abordagem para o desenvolvimento de um etiquetador de alta acurácia para o Português do Brasil

A etiquetagem morfossintática é uma tarefa básica requerida por muitas aplicações de processamento de linguagem natural, tais como análise gramatical e tradução automática, e por aplicações de processamento de fala, por exemplo, síntese de fala. Essa tarefa consiste em etiquetar palavras em uma sentença com as suas categorias gramaticais. Apesar dessas aplicações requererem etiquetadores que demandem maior precisão, os etiquetadores do estado da arte ainda alcançam acurácia de 96 a 97%. Nesta tese, são investigados recursos de corpus e de software para o desenvolvimento de um etiquetador com acurácia superior à do estado da arte para o português brasileiro. Centrada em uma solução híbrida que combina etiquetagem probabilística com etiquetagem baseada em regras, a proposta de tese se concentra em um estudo exploratório sobre o método de etiquetagem, o tamanho, a qualidade, o conjunto de etiquetas e o gênero dos corpora de treinamento e teste, além de avaliar a desambiguização de palavras novas ou desconhecidas presentes nos textos a serem etiquetados. Quatro corpora foram usados nos experimentos: CETENFolha, Bosque CF 7.4, Mac-Morpho e Selva Científica. O modelo de etiquetagem proposto partiu do uso do método de aprendizado baseado em transformação(TBL) ao qual foram adicionadas três estratégias, combinadas em uma arquitetura que integra as saídas (textos etiquetados) de duas ferramentas de uso livre, o TreeTagger e o -TBL, com os módulos adicionados ao modelo. No modelo de etiquetador treinado com o corpus Mac-Morpho, de gênero jornalístico, foram obtidas taxas de acurácia de 98,05% na etiquetagem de textos do Mac-Morpho e 98,27% em textos do Bosque CF 7.4, ambos de gênero jornalístico. Avaliou-se também o desempenho do modelo de etiquetador híbrido proposto na etiquetagem de textos do corpus Selva Científica, de gênero científico. Foram identificadas necessidades de ajustes no etiquetador e nos corpora e, como resultado, foram alcançadas taxas de acurácia de 98,07% no Selva Científica, 98,06% no conjunto de teste do Mac-Morpho e 98,30% em textos do Bosque CF 7.4. Esses resultados são significativos, pois as taxas de acurácia alcançadas são superiores às do estado da arte, validando o modelo proposto em busca de um etiquetador morfossintático mais confiável.

Search for narrow resonances and quantum black holes in inclusive and b-tagged dijet mass spectra from pp collisions at root s=7 TeV

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Identification of b-quark jets with the CMS experiment

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Asymmetric chromosome segregation in Xanthomonas citri ssp. citri

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

O aspecto verbal em Apolodoro: um estudo baseado em corpus sobre os padrões de usos aspectuais em Biblioteca

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)