Effects of increased CO2 on fish gill and plasma proteome

Ocean acidification and warming are both primarily caused by increased levels of atmospheric CO2, and marine organisms are exposed to these two stressors simultaneously. Although the effects of temperature on fish have been investigated over the last century, the long-term effects of moderate CO2 exposure and the combination of both stressors are almost entirely unknown. A proteomics approach was used to assess the adverse physiological and biochemical changes that may occur from the exposure to these two environmental stressors. We analysed gills and blood plasma of Atlantic halibut (Hippoglossus hippoglossus) exposed to temperatures of 12°C (control) and 18°C (impaired growth) in combination with control (400 µatm) or high-CO2 water (1000 µatm) for 14 weeks. The proteomic analysis was performed using two-dimensional gel electrophoresis (2DE) followed by Nanoflow LC-MS/MS using a LTQ-Orbitrap. The high-CO2 treatment induced the up-regulation of immune system-related proteins, as indicated by the up-regulation of the plasma proteins complement component C3 and fibrinogen beta chain precursor in both temperature treatments. Changes in gill proteome in the high-CO2 (18°C) group were mostly related to increased energy metabolism proteins (ATP synthase, malate dehydrogenase, malate dehydrogenase thermostable, and fructose-1,6-bisphosphate aldolase), possibly coupled to a higher energy demand. Gills from fish exposed to high-CO2 at both temperature treatments showed changes in proteins associated with increased cellular turnover and apoptosis signalling (annexin 5, eukaryotic translation elongation factor 1 gamma, receptor for protein kinase C, and putative ribosomal protein S27). This study indicates that moderate CO2-driven acidification, alone and combined with high temperature, can elicit biochemical changes that may affect fish health.

The Agrobacterium vitis T-6b oncoprotein induces auxin-independent cell expansion in tobacco

Among the Agrobacterium T-DNA genes, rolB, rolC, orf13, orf8, lso, 6b and several other genes encode weakly homologous proteins with remarkable effects on plant growth. The 6b oncogene induces tumors and enations. In order to study its properties we have used transgenic tobacco plants that carry a dexamethasone-inducible 6b gene, dex-T-6b. Upon induction, dex-T-6b plants develop a large array of morphological modifications, some of which involve abnormal cell expansion. In the present investigation, dex-T-6b-induced expansion was studied in intact leaves and an in vitro leaf disc system. Although T-6b and indole-3-acetic acid (IAA) both induced expansion and were non-additive, T-6b expression did not increase IAA levels, nor did it induce an IAA-responsive gene. Fusicoccin (FC) is known to stimulate expansion by increasing cell wall plasticity. T-6b- and FC-induced expansion were additive at saturating FC concentrations, indicating that T-6b does not act by a similar mechanism to FC. T-6b expression led to higher leaf osmolality values, in contrast to FC, suggesting that the T-6b gene induces expansion by increasing osmolyte concentrations. Metabolite profiling showed that glucose and fructose played a major role in this increase. We infer that T-6b disrupts the osmoregulatory controls that govern cell expansion during development and wound healing.

Assessment of watercore development in apples with MRI: Effect offruit location in the canopy

tWatercore distribution inside apple fruit (block or radial), and its incidence (% of tissue) were relatedto the effect of solar radiation inside the canopy as measured by a set of low-cost irradiation sensors.221 samples were harvested in two seasons from the top and the bottom of the canopy and submittedto the non-invasive and non-destructive technique of magnetic resonance imaging (MRI) in order toobtain 20 inner tomography slices from each fruit and analyze the damaged areas using an interactive3D segmentation method. The number of fruit corresponding to each type of damage and the relevantpercentage were calculated and it was found that apples from the top of the tree were mainly of the radialtype (84%) and had more watercore (approx. 5% more) than apples from the bottom (65% radial). From theimage segmentation, the Euler number, a morphometric parameter, was extracted from the segmentedimages and related to the type of watercore symptoms. Apples with block watercore were grouped inEuler numbers between −400 and 400 with a small evolution. For apples with radial development, theEuler number was highly negative: up to −1439. Significant differences were also found regarding sugarcomposition, with higher fructose and total sugar contents in apples from the upper canopy, compared tothose in the lower canopy location. In the seasons studied (2011 and 2012), significantly higher sorbitoland lower sucrose and fructose contents were found in watercore-affected tissue compared to the healthytissue of affected apples and also compared to healthy apples.

1H HR MAS NMR metabolomic and non-destructive 2D NMR relaxometry to assess internal quality in apples.

NMR can be considered a multi-scale multidimensional technology in the sense that it provides both spatial insight at macroscopic (MRI) or microscopic level (relaxometry), together with chemical characterization (HR-MAS). In this study 296 apples (from 4 cultivars) were MRI screened (20 slices per fruit) among which 7 fruits were used for metabolomic study by 1H HR MAS in order to assess various chemical shifts: malic acid, sucrose, glucose, fructose and ethanol. On the first season, tissue samples were taken from the sound and affected apples (near the core, centre and outer part of the mesocarp) belonging to sound and affected locations, while on the second season, tissue samples were focused on the comparison between sound and affected tissue. Beside, MRI and 2D non-destructive relaxometry (on whole fruits, and localized tissue) where performed on 72 and 12 apples respectively in order to compare features at macroscopic (tissue) and microscopic (subcellular) level. HR MAS shows higher content of ?-glucose, ?-glucose, malic acid and aromatic compounds in watercore affected tissues from both seasons, while sound tissue reflects higher sucrose. Microscopic (subcellular) degradation of tissue varies according to disorder development and is in good accordance with macroscopic characterization with MRI.

Improved walnut mass micropropagation through the combined use of phloroglucinol and FeEDDHA

Despite the socioeconomic importance of walnut trees, poor rooting and recalcitrance to in vitro culture have hampered the establishment of high-yield clonal plantations. To improve walnut micropropagation, we introduced several modifications to current methods and evaluated the effects on microshoot performance and acclimatization. Nine selected genotypes (13-year-old trees) of the commercial hybrid Juglans major 209 x J. regia were cultured in vitro on DKW-C medium supplemented with 4.4 µM BA and 50 µM IBA. A protocol was developed that relies on the use of 0.40 mM phloroglucinol during shoot multiplication, 0.20 mM previous root induction, and 6.81 mg/L Fe3+ (FeEDDHA). Moreover, the addition of 83.2 µM glucose during the root expression phase significantly improved plant survival during acclimatization. Phloroglucinol promoted microshoot elongation but inhibited rooting, especially at concentrations above 0.40 mM. Replacing FeEDTA by FeEDDHA diminished chlorotic symptoms and improved rooting, with up to 90% microshoots developing viable roots. Likewise, glucose was more efficient than sucrose or fructose in promoting plant survival. At the proposed working concentrations, neither glucose nor FeEDDHA caused any noticeable deleterious effect on walnut micropropagation. Microscopic analysis revealed the physical continuity between adventitious roots and stem pericycles. Analysis of leaf genomic DNA with eight polymorphic microsatellite markers was supportive of the clonal fidelity and genetic stability of the micropropagated material. Successful clonal plantations (over 5,800 ramets) have been established by applying this protocol.

Aplicación de la celulosa bacteriana a la restauración del patrimonio bibliográfico y documental en papel

La preservación del patrimonio bibliográfico y documental en papel es uno de los mayores retos a los que se enfrentan bibliotecas y archivos de todo el mundo. La búsqueda de soluciones al problema del papel degradado ha sido abordada históricamente desde dos líneas de trabajo predominantes: la conservación de estos documentos mediante la neutralización de los ácidos presentes en ellos con agentes alcalinos, y su restauración mediante el método de laminación fundamentalmente con papel de origen vegetal. Sin embargo, no se ha explorado con éxito la posibilidad de reforzar la celulosa dañada, y el problema sigue sin encontrar una solución satisfactoria. Hasta el día de hoy, el desarrollo de tratamientos basados en biotecnología en la conservación del patrimonio documental ha sido muy escaso, aunque la capacidad de ciertas bacterias de producir celulosa lleva a plantear su uso en el campo de la conservación y restauración del papel. La celulosa bacteriana (CB) es químicamente idéntica a la celulosa vegetal, pero su organización macroscópica es diferente. Sus propiedades únicas (alto grado de cristalinidad, durabilidad, resistencia y biocompatibilidad) han hecho de este material un excelente recurso en diferentes campos. En el desarrollo de esta tesis se ha estudiado el uso de la celulosa bacteriana, de alta calidad, generada por Gluconacetobacter sucrofermentans CECT 7291, para restaurar documentos deteriorados y consolidar los que puedan estar en peligro de degradación, evitando así su destrucción y proporcionando al papel que se restaura unas buenas propiedades mecánicas, ópticas y estructurales. Se desarrollan asimismo protocolos de trabajo que permitan la aplicación de dicha celulosa. En primer lugar se seleccionó el medio de cultivo que proporcionó una celulosa adecuada para su uso en restauración. Para ello se evaluó el efecto que tienen sobre la celulosa generada las fuentes de carbono y nitrógeno del medio de cultivo, manteniendo como parámetros fijos la temperatura y el pH inicial del medio, y efectuando los ensayos en condiciones estáticas. Se evaluó, también, el efecto que tiene en la CB la adición de un 1% de etanol al medio de cultivo. Las capas de celulosa se recolectaron a cuatro tiempos distintos, caracterizando en cada uno de ellos el medio de cultivo (pH y consumo de fuente de carbono), y las capas de CB (pH, peso seco y propiedades ópticas y mecánicas). La mejor combinación de fuentes de carbono y nitrógeno resultó ser fructosa más extracto de levadura y extracto de maíz, con o sin etanol, que proporcionaban una buena relación entre la producción de celulosa y el consumo de fuente de carbono, y que generaban una capa de celulosa resistente y homogénea. La adición de etanol al medio de cultivo, si bien aumentaba la productividad, causaba un descenso apreciable de pH. Las capas de CB obtenidas con los medios de cultivo optimizados se caracterizaron en términos de sus índices de desgarro y estallido, propiedades ópticas, microscopía electrónica de barrido (SEM), difracción de rayos-X, espectroscopía infrarroja con transformada de Fourier (FTIR), grado de polimerización, ángulos de contacto estáticos y dinámicos, y porosimetría de intrusión de mercurio. Por otro lado hay que tener en cuenta que el material restaurado debe ser estable con el tiempo. Por ello esta misma caracterización se efectuó tras someter a las capas de CB a un proceso de envejecimiento acelerado. Los resultados mostraron que la CB resultante tiene un elevado índice de cristalinidad, baja porosidad interna, buenas propiedades mecánicas, y alta estabilidad en el tiempo. Para desarrollar los protocolos de trabajo que permitan la restauración con esta celulosa optimizada, se comienzó con un proceso de selección de los papeles que van a ser restaurados. Se eligieron tres tipos de papeles modelo, hechos con pasta mecánica, química y filtro (antes y después de ser sometidos a un proceso de envejecimiento acelerado), y tres libros viejos adquiridos en el mercado de segunda mano. Estos ejemplares a restaurar se caracterizaron también en términos de sus propiedades mecánicas y fisicoquímicas. El primer protocolo de restauración con CB que se evaluó fue el denominado laminación. Consiste en aplicar un material de refuerzo al documento mediante el uso de un adhesivo. Se seleccionó para ello la CB producida en el medio de cultivo optimizado con un 1% de etanol. Se aplicó un método de purificación alcalino (1 hora a 90 °C en NaOH al 1%) y como adhesivo se seleccionó almidón de trigo. El proceso de laminación se efectuó también con papel japonés (PJ), un material habitualmente utilizado en conservación, para comparar ambos materiales. Se concluyó que no hay diferencias significativas en las características estudiadas entre los dos tipos de materiales de refuerzo. Se caracterizó el material reforzado y, también, después de sufrir un proceso de envejecimiento acelerado. Los papeles laminados con CB mostraban diferencias más marcadas en las propiedades ópticas que los restaurados con PJ, con respecto a los originales. Sin embargo, el texto era más legible cuando el material de restauración era la CB. La mojabilidad disminuía con ambos tipos de refuerzo, aunque en los papeles laminados con CB de manera más marcada e independiente del material a restaurar. Esto se debe a la estructura cerrada de la CB, que también conduce a una disminución en la permeabilidad al aire. Este estudio sugiere que la CB mejora la calidad del papel deteriorado, sin alterar la información que contiene, y que esta mejora se mantiene a lo largo del tiempo. Por tanto, la CB puede ser utilizada como material de refuerzo para laminar, pudiendo ser más adecuada que el PJ para ciertos tipos de papeles. El otro método de restauración que se estudió fue la generación in situ de la CB sobre el papel a restaurar. Para ello se seleccionó el medio de cultivo sin etanol, ya que el descenso de pH que causaba su presencia podría dañar el documento a restaurar. El método de purificación elegido fue un tratamiento térmico (24 horas a 65 °C), menos agresivo para el material a restaurar que el tratamiento alcalino. Se seleccionó la aplicación del medio de cultivo con la bacteria mediante pincel sobre el material a restaurar. Una vez caracterizado el material restaurado, y éste mismo tras sufrir un proceso de envejecimiento acelerado, se concluyó que no hay modificación apreciable en ninguna característica, salvo en la permeabilidad al aire, que disminuye de manera muy evidente con la generación de CB, dando lugar a un material prácticamente impermeable al aire. En general se puede concluir que ha quedado demostrada la capacidad que tiene la celulosa generada por la bacteria Gluconacetobacter sucrofermentans CECT 7291 para ser utilizada como material de refuerzo en la restauración del patrimonio documental en papel. Asimismo se han desarrollado dos métodos de aplicación, uno ex situ y otro in situ, para efectuar esta tarea de restauración. ABSTRACT The preservation of bibliographic and documentary heritage is one of the biggest challenges that libraries and archives around the world have to face. The search for solutions to the problem of degraded paper has historically been focused from two predominants lines of work: the conservation of these documents by the neutralization of acids in them with alkaline agents, and their restoration by lining them with, basically, cellulose from vegetal sources. However, the possibility of strengthening the damaged cellulose has not been successfully explored, and the problem still persists. Until today, the development of biotechnology-based treatments in documentary heritage conservation has been scarce, although the ability of certain bacteria to produce cellulose takes to propose its use in the field of conservation and restoration of paper. The bacterial cellulose (BC) is chemically identical to the plant cellulose, but its macroscopic organization is different. Its unique properties (high degree of crystallinity, durability, strength and biocompatibility), makes it an excellent resource in different fields. The use of high-quality BC generated by Gluconacetobacter sucrofermentans CECT 7291 to restore damaged documents and to consolidate those that may be at risk of degradation, has been studied in this thesis, trying to prevent the document destruction, and to get reinforced papers with good mechanical, optical and structural properties. Protocols that allow the implementation of the BC as a reinforcing material were also developed. First of all, in order to select the culture medium that provides a cellulose suitable for its use in restoration, it has been evaluated the effect that the carbon and nitrogen sources from the culture medium have on the generated BC, keeping the temperature and the initial pH of the medium as fixed parameters, and performing the culture without shaking. The effect of the addition of 1% ethanol to the culture medium on BC properties was also evaluated. The cellulose layers were collected at four different times, characterizing in all of them the culture medium (pH and carbon source consumption), and the BC sheets (pH, dry weight and optical and mechanical properties). The best combination of carbon and nitrogen sources proved to be fructose plus yeast extract and corn steep liquor, with or without ethanol, which provided a good balance between the cellulose production and the consumption of carbon source, and generating BC sheets homogeneous and resistant. The addition of ethanol to the culture medium increased productivity but caused a noticeable decrement in pH. The BC layers generated with these optimized culture media, have been characterized in terms of tear and burst index, optical properties, scanning electron microscopy (SEM), X-ray diffraction, infrared Fourier transform spectroscopy (FTIR), polymerization degree, static and dynamic contact angles, and mercury intrusion porosimetry. Moreover it must be kept in mind that the restored materials should be stable over time. Therefore, the same characterization was performed after subjecting the layers of BC to an accelerated aging process. The results showed that the BC sheets obtained have a high crystallinity index, low internal porosity, good mechanical properties, and high stability over time. To develop working protocols to use this optimized BC in paper restoration, the first step was to select the samples to restore. Three types of model papers, made from mechanical pulp, chemical pulp and filter paper (before and after an accelerated aging process), and three old books purchased in the second hand market, were chosen. These specimens to be restored were also characterized in terms of its mechanical and physicochemical properties. The first protocol of restoration with BC to be evaluated is called linning. It consists on applying a reinforcing material to the document using an adhesive. The BC produced in the optimized culture medium with 1% ethanol was selected. An alkali purification method (1 hour at 90 °C in 1% NaOH) was applied, and wheat starch was selected as adhesive. The linning process was also carried out with Japanese paper (JP), a material commonly used in conservation, in order to compare both materials. It was concluded that there are no significant differences in the characteristics studied of the two types of reinforcing materials. The reinforced materials were characterized before and after undergoing to an accelerated aging. Papers lined with BC showed more marked differences in the optical properties that papers restored with JP. However, the text was more readable when BC was the reinforcing material. Wettability decreased with both types of reinforcement, although in the papers linned with BC it happened more marked and independently of the sample to restore. This is due to the closed structure of BC, which also leads to a decrement in air permeance. This study suggests that BC improves the deteriorated paper quality, without altering the information on it, and that this improvement is maintained over time. Therefore, the BC may be used as reinforcing material for linning, being more suitable than the JP to restore certain types of papers. The other restoration method to be evaluated was the in situ generation of BC over the paper to restore. For this purpose the culture medium without ethanol was selected, as the pH decrement caused by his presence would damage the document to restore. As purification method a heat treatment (24 hours at 65 °C) was chosen, less aggressive to the material to restore than the alkaline treatment. It was decided to apply the culture medium with the bacteria onto the material to restore with a brush. The reinforced material was characterized before and after an accelerated aging process. It was concluded that there was no substantial change in any characteristic, except for air permeance, which decreases very sharply after the generation of BC, getting a substantially air impermeable material. In general, it can be concluded that the ability of BC produced by Gluconacetobacter sucrofermentans CECT 7291 for its use as a reinforcing material in the restoration of paper documentary heritage, has been demonstrated. Also, two restoration methods, one ex situ and another in situ have been developed.