Data integration from two microarray platforms identifies bi-allelic genetic inactivation of RIC8A in a breast cancer cell line

Background: Using array comparative genomic hybridization (aCGH), a large number of deleted genomic regions have been identified in human cancers. However, subsequent efforts to identify target genes selected for inactivation in these regions have often been challenging. Methods: We integrated here genome-wide copy number data with gene expression data and non-sense mediated mRNA decay rates in breast cancer cell lines to prioritize gene candidates that are likely to be tumour suppressor genes inactivated by bi-allelic genetic events. The candidates were sequenced to identify potential mutations. Results: This integrated genomic approach led to the identification of RIC8A at 11p15 as a putative candidate target gene for the genomic deletion in the ZR-75-1 breast cancer cell line. We identified a truncating mutation in this cell line, leading to loss of expression and rapid decay of the transcript. We screened 127 breast cancers for RIC8A mutations, but did not find any pathogenic mutations. No promoter hypermethylation in these tumours was detected either. However, analysis of gene expression data from breast tumours identified a small group of aggressive tumours that displayed low levels of RIC8A transcripts. qRT-PCR analysis of 38 breast tumours showed a strong association between low RIC8A expression and the presence of TP53 mutations (P = 0.006). Conclusion: We demonstrate a data integration strategy leading to the identification of RIC8A as a gene undergoing a classical double-hit genetic inactivation in a breast cancer cell line, as well as in vivo evidence of loss of RIC8A expression in a subgroup of aggressive TP53 mutant breast cancers.

Effect of La modification on antiferroelectricity and dielectric phase transition in sol-gel grown PbZrO3 thin films

Antiferroelectricity of sol-gel grown pure and La modified PbZrO3 thin films, with a maximum extent of 6 mol%, has been characterized by temperature dependent P-E hysteresis loops within the applied electric field of 60 MV/m. It has been seen that on extent of La modification electric field induced phase transformation can be altered and at 40 degrees C its maximum value has been observed at +/- 38 MV/m on 6 mol% modifications whereas the minimum value is +/- 22 MV/m on 1 mol%. On La modification the variation of electric field induced phase transformations at 40 degrees C has been correlated with the temperature of ntiferroelectric phase condensation on cooling. The critical electric fields for saturated P-E hysteresis loops have been defined from field dependent maximum polarizations and their variations on La modification show a similar trend as found in their dielectric phase transition temperatures. (C) 2010 Elsevier Ltd. All rights reserved.

On the Modal Content of A Posteriori Necessities

This paper challenges the Kripkean interpretation of a posteriori necessities. It will be demonstrated, by an analysis of classic examples, that the modal content of supposed a posteriori necessities is more complicated than the Kripkean line suggests. We will see that further research is needed concerning the a priori principles underlying all a posteriori necessities. In the course of this analysis it will emerge that the modal content of a posteriori necessities can be best described in terms of a Finean conception of modality – by giving essences priority over modality. The upshot of this is that we might be able to establish the necessity of certain supposed a posteriori necessities by a priori means.

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 August 2010-30 September 2010

This article documents the addition of 229 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Acacia auriculiformis x Acacia mangium hybrid, Alabama argillacea, Anoplopoma fimbria, Aplochiton zebra, Brevicoryne brassicae, Bruguiera gymnorhiza, Bucorvus leadbeateri, Delphacodes detecta, Tumidagena minuta, Dictyostelium giganteum, Echinogammarus berilloni, Epimedium sagittatum, Fraxinus excelsior, Labeo chrysophekadion, Oncorhynchus clarki lewisi, Paratrechina longicornis, Phaeocystis antarctica, Pinus roxburghii and Potamilus capax. These loci were cross-tested on the following species: Acacia peregrinalis, Acacia crassicarpa, Bruguiera cylindrica, Delphacodes detecta, Tumidagena minuta, Dictyostelium macrocephalum, Dictyostelium discoideum, Dictyostelium purpureum, Dictyostelium mucoroides, Dictyostelium rosarium, Polysphondylium pallidum, Epimedium brevicornum, Epimedium koreanum, Epimedium pubescens, Epimedium wushanese and Fraxinus angustifolia.

Modeling and design of a solar thermal system for hybrid cooking application

This paper proposes a hybrid solar cooking system where the solar energy is brought to the kitchen. The energy source is a combination of the solar thermal energy and the Liquefied Petroleum Gas (LPG) that is in common use in kitchens. The solar thermal energy is transferred to the kitchen by means of a circulating fluid. The transfer of solar heat is a twofold process wherein the energy from the collector is transferred first to an intermediate energy storage buffer and the energy is subsequently transferred from the buffer to the cooking load. There are three parameters that are controlled in order to maximize the energy transfer from the collector to the load viz, the fluid flow rate from collector to buffer, fluid flow rate from buffer to load and the diameter of the pipes. This is a complex multi energy domain system comprising energy flow across several domains such as thermal, electrical and hydraulic. The entire system is modeled using the bond graph approach with seamless integration of the power flow in these domains. A method to estimate different parameters of the practical cooking system is also explained. Design and life cycle costing of the system is also discussed. The modeled system is simulated and the results are validated experimentally. (C) 2010 Elsevier Ltd. All rights reserved.

Nanoscale Ag–Pd and Cu–Pd alloys

Nanoparticles of Ag-Pd and Gu-Pd alloys with diameters in the 5-40 nm range have been prepared over the entire range of compositions, by employing the heterogeneous reaction of dry methanol or ethanol with intimate mixtures of AgNO3+PdOx and CuOx+PdOx, respectively. The nanoscale alloys have been characterized by energy-dispersive Xray (EDX) analysis, transmission electron microscopy (TEM) and X-ray diffraction (XRD). All the alloy particles possess the fee structure and can be obtained in bulk quantities.

Amorphous, Monoclinic, and Tetragonal Porous Zirconia Through a Controlled Self-Sustained Combustion Route

Porous, large surface area, metastable zirconias, are of importance to catalytic, electrochemical, biological, and thermal insulation applications. Combustion synthesis is a very commonly used method for producing such zirconias. However, its rapid nature makes control difficult. A simple modification has been made to traditional solution combustion synthesis to address this problem. It involves the addition of starch to yield a starting mixture with a ``dough-like'' consistency. Just 5 wt% starch is seen to significantly alter the combustion characteristics of the ``dough.'' In particular, it helps to achieve better control over reaction zone temperature that is significantly lower than the one calculated by the adiabatic approximation typically used in self-propagating high-temperature synthesis. The effect of such control is demonstrated by the ability to tune dough composition to yield zirconias with different phase compositions from the relatively elusive ``amorphous'' to monoclinic (> 30 nm grain size) and tetragonal pure zirconia (< 30 nm grain size). The nature of this amorphous phase has been investigated using infrared spectroscopy. Starch content also helps tailor porosity in the final product. Zirconias with an average pore size of about 50 mu m and specific surface area as large as 110 m2/g have been obtained.

Solubilities of Pb+2, Bi+3, Sb+3 and Cu+1 sulphides in (NaCl KCl Na2S) melts

Solubilities of common metal sulfides have been determined in the (NaCl+KCl) eutectic melt with and without Na2S. A novel gas-phase equilibrium technique has been used for PbS, Bi2S3, and So2S3, and an improved liquid phase equilibrium technique for Cu2S, which eliminates the errors due to physical entrapment of the sulfide phase and segregation on quenching, enabling precise measurements to be made. Solubilities in the (NaCl+KCl) eutectic melt were determined as a function of temperature in the rante 700° to 950°C, and were found to be small. The partial molar heats of mixing of the sulfides in the eutectic melt have been calculated from the solubility measurements, to be 13.3, 31.4, 37.1, and 49.0 kcal for PbSs), Sb2S2(l), and Cu2S(s), respectively. Sodium sulfide addition was observed to enhance these solubilities, the effect being largest for Cu2S followed by Sb2S3, Bi2S3, and PbS. This effect is explained qualitatively. It was observed that PbS and Sb2S3 obey Henry's law up to saturation in (NaCl+KCl+Na2S) melts.

Macro-Level Assessment of Seismically Induced Landslide Hazard for the State of Sikkim, India Based On GIS Technique

This paper presents a macro-level seismic landslide hazard assessment for the entire state of Sikkim, India, based on the Newmark's methodology. The slope map of Sikkim was derived from ASTER Global Digital Elevation Model (GDEM). Seismic shaking in terms of peak horizontal acceleration (PHA) at bedrock level was estimated from deterministic seismic hazard analysis (DSHA), considering point source model. Peak horizontal acceleration at the surface level for the study area was estimated based on nonlinear site amplification technique, considering B-type NEHRP site class. The PHA at surface was considered to induce driving forces on slopes, thus causing landslides. Knowing the surface level PHA and slope angle, the seismic landslide hazard assessment for each grid point was carried out using Newmark's analysis. The critical static factor of safety required to resist landslide for the PHA (obtained from deterministic analysis) was evaluated and its spatial variation throughout the study area is presented. For any slope in the study area, if the in-situ (available) static factor of safety is greater than the static factor of safety required to resist landslide as predicted in the present study, that slope is considered to be safe.

System reliability analysis of granular filter for protection against piping in dams

Granular filters are provided for the safety of water retaining structure for protection against piping failure. The phenomenon of piping triggers when the base soil to be protected starts migrating in the direction of seepage flow under the influence of seepage force. To protect base soil from migration, the voids in the filter media should be small enough but it should not also be too small to block smooth passage of seeping water. Fulfilling these two contradictory design requirements at the same time is a major concern for the successful performance of granular filter media. Since Terzaghi era, conventionally, particle size distribution (PSD) of granular filters is designed based on particle size distribution characteristics of the base soil to be protected. The design approach provides a range of D15f value in which the PSD of granular filter media should fall and there exist infinite possibilities. Further, safety against the two critical design requirements cannot be ensured. Although used successfully for many decades, the existing filter design guidelines are purely empirical in nature accompanied with experience and good engineering judgment. In the present study, analytical solutions for obtaining the factor of safety with respect to base soil particle migration and soil permeability consideration as proposed by the authors are first discussed. The solution takes into consideration the basic geotechnical properties of base soil and filter media as well as existing hydraulic conditions and provides a comprehensive solution to the granular filter design with ability to assess the stability in terms of factor of safety. Considering the fact that geotechnical properties are variable in nature, probabilistic analysis is further suggested to evaluate the system reliability of the filter media that may help in risk assessment and risk management for decision making.

真空辐射加热基片的温度分布

真空辐射加热下基片表面温度分布的均匀性是薄膜制备中的关键问题之一。采用数值计算和比色红外测温两种方法，研究了作者自行研制的真空辐射加热器（IMCAS-VRH）的性能。利用IMCAS-VRH加热直径6in的单晶硅基片,当电功率为3860W时，基片表面平均温度为1093K,整个基片上的温度变化的测量值约为6 K。基片表面温度分布的计算结果与测量数据符合得很好，进一步的计算分析表明钼丝对辐射的遮挡效应、隔热屏和基片热传导等对基片温度分布均匀性有重要影响。

Efecto de concentraciones de aceite de algodón sobre la viabilidad, patogenicidad, estabilidad de la cepa CB-32 de Beauveria bassiana (Bals y vuils)

En Nicaragua, Plutella xylostella es la plaga que causa mayores daños al cultivo de repollo (Brassica oleracea) lo que implica una gran inversión en el control de la misma. Para contribuir a la búsqueda de alternativas para el Manejo integrado de esta plaga se realizó este estudio en las instalaciones del Centro Nacional de Protección Vegetal (CENAPROVE) y en la Universidad Nacional Agraria durante el periodo comprendido entre Febrero 1991 y Febrero 1992. Se evaluó la Cepa CB-32 del hongo entomopatógeno Beauveria bassiana (Bals & Vuils) en 6 formulaciones conteniendo 0%, 2%, 4%, 6%. 8% y 10% de aceite de algodón en agua sobre larvas del segundo instar de P. xylostella. La concentración de conidias en las formulaciones fué de 3.35x108 En un rango de tiempo de 14-30 horas después de la inoculación en PDA se distinguieron con un mayor porcentaje de germinación de conidias las formulaciones con O y 2% de aceite de algodón. Las mismas demostraron mayor sedimentación reportando 0.2 y 0.5 ml seis horas después de ser sometidas a reposo. Para la evaluación del efecto de la radiación solar sobre las conidias de B. bassiana se realizó un análisis de varianza y pruebas de Tukey con un 95% de confianza, las respaldan que las formulaciones pueden separarse en cuatro categorías estadísticas diferentes de las cuales en primer lugar tenemos las formulaciones con O y 2% de aceite que presentan el mayor porcentaje de germinación de conidias expuestas a 24 horas de radiación solar (86.61% y 80.36%) respectivamente. A la variable patogenicidad de las conidias de B. bassiana en huésped de Plutella xylostella se efectúo un análisis de varianza y prueba de Tuckey y resulto que las formulaciones pueden clasificarse en 3 categorías estadísticas, sobresaliendo la patogenicidad de las conidias de las formulaciones con O y 2% de aceite reportando 95 y 80% respectivamente. El tiempo letal para las formulaciones no varió provocando la mortalidad dos días después de la inoculación de las larvas por el método de inmersión.

El entierro de Montesquieu

En 1985, Alfonso Guerra, entonces vicepresidente del gobierno español encabezado por Felipe González, pronunció una frase destinada a hacerse famosa: “Montesquieu ha muerto”. Fue vertida cuando el partido socialista (PSOE) aprovechó la mayoría parlamentaria recién alcanzada para reformar la Ley Orgánica del Poder Judicial. De acuerdo con esa reforma, los vocales del Consejo General del Poder Judicial (equivalente a nuestro Consejo de la Magistratura) debían en adelante ser elegidos por el parlamento y no, como hasta entonces, mayoritariamente por los mismos jueces, fórmula a la que se tachaba de “corporativista”2. Los críticos advirtieron allí un intento de manejar los tres órganos clásicos del Estado para un proyecto de gobierno a largo plazo. Nada mejor, para eso, que enterrar de una buena vez por todas al viejo y quizás molesto señor de la Brède y barón de Montesquieu. Como buen político, Guerra, en sus memorias3, negó haber pronunciado literalmente aquella fórmula, aduciendo haber sido sus declaraciones tomadas fuera de contexto, etc...

Estudio del rendimiento agroindustrial de ocho variedades de caña de azúcar (Saccharum sp. hibrido) en un suelo arcilloso-negro

El rendimiento agrícola promedio de las variedades de caña de Azúcar (Saccharun sp Hibrido) plantadas en los diferentes ingenios de Nicaragua, Obteniendo en la Zafra azucarera 86-87 anduvo por las 47.48 toneladas de caña por hectárea, con una producción de azúcar de 488.4 kilómetros por tonelada de caña. (MIDINRA, 1987). Estos rendimientos en comparación con otros países productores de cala se consideran bajos. Para elevar estos rendimientos es necesario realizar estudios de las diferentes variedades que se plantan en las distintas regiones cañeras de Nicaragua, ya que este cultivo depende principalmente de las variedades de aña que se deben plantar,. Además que se encuentran muy influenciadas por el ambiente, en el cual crece y se desarrolla. De tal manera que una misma variedad se comporta diferente de acuerdo al medio en que se desarrolle (Alvarado ,1985) Teniendo en cuanta la necesidad de regionalizar las variedades se hace imprescindible la investigación de las mismas con vistas a obtener variedades de mayor producción que las actuales, como se sabe el potencial básico del rendimiento Agrícola e Industrial en primer lugar está dado por la variedad: (Gallardo, 1978) Es evidente la gran importancia que tiene para nuestro desarrollo el estudio de las variedades de Caña de Azúcar, ya que con altos rendimientos azucareros se llegaría a l optimización de nuestra producción cañera lo que implica a su vez un mayor impulso en la Economía Nacional (centro Azúcar, 1989).

Estimación de pérdidas agrícolas, industriales y económicas en el cultivo de la caña de azúcar causadas por Diatraea spp (Fab) en el Ingenio "Victoria de Julio"

Se llevó a cabo el estudio de las perdidas agrícolas, industriales y económicas que ocasionan los taladradores del genero Diatrea en Zafra 1986-1987 en el Ingenio “Victoria de Julio” con el objetivo de cuantificar estas pérdidas y valorar la influencia de éste género sobre las cantidades de azúcar que se deja de percibir a causa de su ataque sobre el cultivo de la caña de `azúcar. La investigación se realizó en cuatro variedades (L-723,, JA-60-5,- L-6840 y L-6890) que representan actualmente un 95.77% del total del área sembrada en este ingenio y se utilizaron cuatro repeticiones en cada una de ellas, obteniendo los resultados en firma independiente. Realizamos el análisis bajo las pruebas de Tukey, el que nos llevó hasta obtener los resultados de las pérdidas: Los valores obtenidos muestran que no hay diferencia significativa entre las variedades con lo que respecta al porcentaje de infestación e índole de infestación, no siendo así al analizar el porcentaje de intensidad de daño pues se pudo comprobar que existen diferencias significativas y altamente significativas entre la variedad L-723 y las variedades L-6840 y Ja60-5.- De esta forma, al obtener un dato toral de las pérdidas económicas, estas ascienden a la cantidad de $ 14.674.58 (Catorce mil seiscientos setenta y cuatro dólares con cincuenta y ocho centavos) lo que significa una reducción en la captación de divisas para nuestro país.