Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA.

DNA that survives in museum specimens, bones and other tissues recovered by archaeologists is invariably fragmented and chemically modified. The extent to which such modifications accumulate over time is largely unknown but could potentially be used to differentiate between endogenous old DNA and present-day DNA contaminating specimens and experiments. Here we examine mitochondrial DNA sequences from tissue remains that vary in age between 18 and 60,000 years with respect to three molecular features: fragment length, base composition at strand breaks, and apparent C to T substitutions. We find that fragment length does not decrease consistently over time and that strand breaks occur preferentially before purine residues by what may be at least two different molecular mechanisms that are not yet understood. In contrast, the frequency of apparent C to T substitutions towards the 5'-ends of molecules tends to increase over time. These nucleotide misincorporations are thus a useful tool to distinguish recent from ancient DNA sources in specimens that have not been subjected to unusual or harsh treatments.

Délire temporel systématisé et trouble auditif d'origine corticale [Systematized temporal delusion and hearing disorders of cortical origin].

We report a case of delusion characterized by a time disorientation with a constant three days advance. Five years previously, the patient had suffered a left hemisphere stroke with aphasia. The delusional belief appeared at the same time as a cortical deafness following a second right hemisphere infarction. There was severe behaviour disturbances which lasted seven months, then cleared without any other change in the clinical picture. The lesions involved the left parietal lobe as well as the temporal and insular regions of both hemispheres.

Age-specific fitness components and their temporal variation in the barn owl.

Theory predicts that temporal variability plays an important role in the evolution of life histories, but empirical studies evaluating this prediction are rare. In constant environments, fitness can be measured by the population growth rate lambda, and the sensitivity of lambda to changes in fitness components estimates selection on these traits. In variable environments, fitness is measured by the stochastic growth rate lambda(S), and stochastic sensitivities estimate selection pressure. Here we examine age-specific schedules for reproduction and survival in a barn owl population (Tyto alba). We estimated how temporal variability affected fitness and selection, accounting for sampling variance. Despite large sample sizes of old individuals, we found no strong evidence for senescence. The most variable fitness components were associated with reproduction. Survival was less variable. Stochastic simulations showed that the observed variation decreased fitness by about 30%, but the sensitivities of lambda and lambda(S) to changes in all fitness components were almost equal, suggesting that temporal variation had negligible effects on selection. We obtained these results despite high observed variability in the fitness components and relatively short generation time of the study organism, a situation in which temporal variability should be particularly important for natural selection and early senescence is expected.

Temporal changes in mRNA expression of the brain nutrient transporters in the lithium-pilocarpine model of epilepsy in the immature and adult rat.

The lithium-pilocarpine model mimics most features of human temporal lobe epilepsy. Following our prior studies of cerebral metabolic changes, here we explored the expression of transporters for glucose (GLUT1 and GLUT3) and monocarboxylates (MCT1 and MCT2) during and after status epilepticus (SE) induced by lithium-pilocarpine in PN10, PN21, and adult rats. In situ hybridization was used to study the expression of transporter mRNAs during the acute phase (1, 4, 12 and 24h of SE), the latent phase, and the early and late chronic phases. During SE, GLUT1 expression was increased throughout the brain between 1 and 12h of SE, more strongly in adult rats; GLUT3 increased only transiently, at 1 and 4h of SE and mainly in PN10 rats; MCT1 was increased at all ages but 5-10-fold more in adult than in immature rats; MCT2 expression increased mainly in adult rats. At all ages, MCT1 and MCT2 up-regulation was limited to the circuit of seizures while GLUT1 and GLUT3 changes were more widespread. During the latent and chronic phases, the expression of nutrient transporters was normal in PN10 rats. In PN21 rats, GLUT1 was up-regulated in all brain regions. In contrast, in adult rats GLUT1 expression was down-regulated in the piriform cortex, hilus and CA1 as a result of extensive neuronal death. The changes in nutrient transporter expression reported here further support previous findings in other experimental models demonstrating rapid transcriptional responses to marked changes in cerebral energetic/glucose demand.

Plastic brain mechanisms for attaining auditory temporal order judgment proficiency.

Accurate perception of the order of occurrence of sensory information is critical for the building up of coherent representations of the external world from ongoing flows of sensory inputs. While some psychophysical evidence reports that performance on temporal perception can improve, the underlying neural mechanisms remain unresolved. Using electrical neuroimaging analyses of auditory evoked potentials (AEPs), we identified the brain dynamics and mechanism supporting improvements in auditory temporal order judgment (TOJ) during the course of the first vs. latter half of the experiment. Training-induced changes in brain activity were first evident 43-76 ms post stimulus onset and followed from topographic, rather than pure strength, AEP modulations. Improvements in auditory TOJ accuracy thus followed from changes in the configuration of the underlying brain networks during the initial stages of sensory processing. Source estimations revealed an increase in the lateralization of initially bilateral posterior sylvian region (PSR) responses at the beginning of the experiment to left-hemisphere dominance at its end. Further supporting the critical role of left and right PSR in auditory TOJ proficiency, as the experiment progressed, responses in the left and right PSR went from being correlated to un-correlated. These collective findings provide insights on the neurophysiologic mechanism and plasticity of temporal processing of sounds and are consistent with models based on spike timing dependent plasticity.

Distribuição temporal de imaturos de Odonata (Insecta) associados a Eichhornia azurea (Kunth) na Lagoa do Camargo, Rio Paranapanema, São Paulo

Os objetivos deste trabalho foram registrar a abundância e a riqueza de Odonata associada a Eichhornia azurea, durante o período de março de 2004 a março de 2005, na Lagoa do Camargo, lateral ao Rio Paranapanema - São Paulo, após um pulso de inundação extraordinário e também investigar os fatores ambientais determinantes na distribuição da abundância de Odonata. As maiores abundâncias e riquezas ocorreram na estação seca, sendo que Coenagrionidae foi a família mais abundante e com a maior riqueza de gêneros de todo o período estudado. Esta alta abundância possivelmente ocorreu devido a seu comportamento, como postura dos ovos dentro do tecido das macrófitas e hábito escalador. Aeshnidae e Libellulidae apresentaram baixa abundância principalmente na estação seca. Os principais fatores ambientais que afetaram a distribuição da abundância de Odonata foram a temperatura de superfície da água, a pluviosidade e a biomassa de E. azurea.

Abundance and temporal distribution of Gonioterma exquisita Duckworth (Lepidoptera, Elachistidae, Stenomatinae) on Byrsonima pachyphylla Griseb. (Malpighiaceae) in the Brazilian Cerrado

The seasonal characteristics of the Cerrado region strongly influence food resource predictability and vegetal tissue nutritional content. The aims of this work were to record the abundance and temporal distribution of Gonioterma exquisita Duckworth, 1964 (Lepidoptera, Elachistidae) and its relation with phenological, physical, and chemical traits of the host plant Byrsonima pachyphylla Griseb. (Malpighiaceae). Four nutritional quality parameters were determined for new and mature leaves: gross protein and nitrogen content, dry matter, and in vitro digestibility. We inspected 200 plants per month, searching for G. exquisita caterpillars. About 35.8% of the 2,400 plants inspected presented caterpillars, with an abundance peak in the wet season. Caterpillar abundance was positively correlated with mature leaf availability, their food resource. Although mature leaves presented lower gross protein and nitrogen contents than new leaves, this difference was small during the abundance peak of G. exquisita.

Seasonality and temporal structuration of Alticini community (Coleoptera, Chrysomelidae, Galerucinae) in the Araucaria Forest of Parana, Brazil

Seasonality was studied for Alticini trapped with malaise over a period of two years in the Vila Velha State Park, Parana, Brazil. Coleoptera, Chrysomelidae and Alticini showed seasonal distribution, with the highest abundance during spring and summer months. The abundance peaks of these groups were not synchronized. Of all environmental variables tested, photoperiod had the larger effect on the distributional patterns of Coleoptera, Chrysomelidae and Alticini. Also, Chrysomelidae and Alticini probably are related to the quality and availability of host-plants. When richness was high there was a greater similarity among seasons of different years. However, when richness was not pronounced, seasons showed more similarity within the same year than between years. The Alticini community was seasonally structured and a possible mechanism underlying this pattern is asymmetric competition. Nevertheless, it is necessary to account for indirect interactions (plant-enemy mediated) to better understand how Alticini community is structured.

Geoquímica das rochas magmáticas da Ilha Brava:implicações para a origem e variabilidade espaço-temporal do ponto quente de Cabo Verde

A Ilha Brava (64 km2) localiza-se no extremo oeste do alinhamento meridional do arquipélago de Cabo Verde, sendo constituída por três unidades vulcanoestratigráficas que testemunham uma história vulcânica de cerca de 3 Ma. Foi escolhida como objecto de estudo na tentativa de contribuir para a melhor compreensão da origem e local de residência de alguns dos componentes mantélicos, das relações genéticas entre magmas silicatados e carbonatíticos, dos processos de desgaseificação de magmas carbonatíticos e da origem do carbono neles contido, da variabilidade geoquímica espaço-temporal do ponto quente de Cabo Verde, e da profundidade de enraizamento da sua pluma mantélica. A Brava contrasta com as outras ilhas do arquipélago por definir dois grupos geoquímicos distintos. As amostras do Complexo Basal, sendo menos radiogénicas Sr e He e mais em Nd e Pb que a unidade mais recente, são idênticas às ilhas do norte e explicáveis pela mistura de um componente do tipo HIMU (crosta oceânica reciclada com 1.3 Ga) e manto inferior (3He/4He até 12.85 Ra), carreados para a “superfície” pela pluma mantélica. Tal como é usual nas ilhas do sul, a Unidade Superior sugere, em adição, o envolvimento de um componente com afinidade EM-1, aqui considerado representativo de fragmentos de litosfera subcontinental dispersos na astenosfera. Os carbonatitos definem dois grupos com assinaturas isotópicas semelhantes às das rochas silicatadas contemporâneas. Os calciocarbonatitos resultaram de imiscibilidade líquida produzindo magmas nefeliníticos e carbonatíticos, enquanto os magnesiocarbonatitos representam líquidos residuais após a fraccionação de calcite a partir de um magma carbonatítico. As muito baixas razões 4He/40Ar* (≈ 0.25) que caracterizam a fonte dos carbonatitos do Complexo Basal indicam uma evolução a partir de razões K/U muito mais elevadas que o conjunto dos reservatórios silicatados da Terra. Sendo estes valores, também incompatíveis com a reciclagem de componentes crostais, foram aqui interpretados como podendo reflectir a contribuição do “missing Ar reservoir” para a fonte mantélica dos carbonatitos.

Spatio-temporal dynamics of Alticini (Coleoptera, Chrysomelidae) in a fragment of Araucaria Forest in the state of Parana, Brazil

Alticini fauna from five areas, two with different types of management (Borda and Araucaria) and three with different levels of conservation (Fase 1, Fase 2 and Fase 3), in the Araucaria Forest of the Parana was captured with malaise traps. The material was collected weekly, from September/1999 to August/2001, in the Parque Estadual of Vila Velha, Ponta Grossa. 1,891 individuals of 106 Alticini species were collected with only seven species common to all areas. Despite the proximity between sampling areas, the number of species shared between pairs of areas was low, not reaching 40%, with the Araucaria and Fase 1 areas being the most similar. The community structure of the areas Fase 1 and Fase 2 were most related. Fase 1, in initial stage of succession, showed the largert variation in the abundance and richness from one year to another.

Fluctuación y distribución espacio-temporal de Tuthillia cognata (Hemiptera, Psyllidae) y de Ocyptamus persimilis (Diptera, Syrphidae) en el cultivo de camu-camu Myrciaria dubia (Myrtaceae) en Ucayali, Perú

Tuthillia cognata Hodkinson, Brown & Burckhardt, 1986 (Hemiptera, Psyllidae) es una plaga importante en el cultivo de camu-camu, Myrciaria dubia H.B.K. Mc Vaugh (Myrtaceae) en la Amazonía Peruana. El objetivo del presente estudio fue determinar la fluctuación y la distribución espacio-temporal de T. cognata y de su controlador biológico Ocyptamus persimilis (Curran, 1930) (Diptera, Syrphidae), entre enero a noviembre del 2004 en los caseríos San Juan y Padre Bernardo, Pucallpa, Ucayali, Perú. El número de ninfas y adultos de T. cognata fue mayor en la época lluviosa que en la seca, pero no en el número de huevos, ni en el número de colonias. Los huevos, ninfas y adultos prefirieron el tercio superior de la planta en comparación con el tercio medio e inferior en ambos caseríos. La excepción fue la presencia de huevos en el caserío San Juan que no mostró preferencias por ninguno de los tercios. No se observaron diferencias en el porcentaje de infestación por T. cognata entre ambos caseríos y entre la época seca y lluviosa. En O. persimilis, no se encontró diferencias en el número de huevos, larvas y pupas entre la época seca y lluviosa. Se observó que los huevos, larvas y pupas prefirieron el tercio superior de la planta en comparación con el tercio medio e inferior en ambos caseríos. Ambas especies, T. cognata y O. persimilis presentaron un patrón de distribución espacial - temporal agregado. Se encontró una relación directa entre el número de colonias de T. cognata y O. persimilis. Sin embargo, el número de huevos, ninfas y adultos de T. cognata no se encontraron correlacionados con el número de huevos, larvas y pupas de O. persimilis.

Variabilidad espacio-temporal de clorofila, producción primaria y nutrientes frente a la costa peruana

La serie de datos sobre clorófila, producción primaria y nutrientes de la costa pe­ ruana (4º -18º S) reunidos por el IMARPE a través de varios años ha permitido establecer los patrones promedio de su distribución en la superficial del mar. El principal objetivo del presente estudio fue la variabilidad a toda escala incluyendo "El Niño". Las fluctuaciones a corto plazo fueron evidentes dentro del periodo 1964-1978 pero no lograron alterar una distribución característica para todo el periodo. La intensidad estacional del afloramiento en el norte y sur (otoño e invierno) estuvo relacionada a la distribución de nutrientes, clorofila y productividad del fitoplancton cuya ocurrencia en ''patches" y lenguas reflejó la dinámica que gobierna la región costera de Perú como resultado del flujo de aguas oceánicas hacia la costa y del flujo de aguas afloradas Juera de la costa. El ciclo estacional de fitoplancton medido en base a su biomasa comienza en primavera cuando el régimen local de luz mejora, las concentraciones de clorófila alcanzan su máximo a mediados de verano y comienzos de otoño decreciendo en invierno; de esta variabilidad en la abundancia resulta una correlación estacional negativa con los nutrientes en verano e invierno. Similar tendencia mostró la distribución de producción primaria cuyas máximas estuvieron relacionadas con las aguas frías a lo largo de la costa. La distribución latitudinal de clorófila en la costa peruana durante los años de ocurrencia de El Niño mostró características diferentes del patrón normal especialmente en 1976. Las concentraciones se hallaron muy pegadas a la costa, una excepción fueron. las áreas donde dominó el dinoflagelado Gymnodinium splendens con una distribución más alejada de la costa. Los años cálidos se caracterizaron por una baja biomasa del fitoplancton en relación a la media de 1966 considerado como un año de condiciones promedio. El rango anual de la concentración de nutrientes encontrado a una temperatura dada mostró límites definidos para las diferentes estaciones del año. En respuesta al incremento de la temperatura Juera de la costa (norte y oeste) las variables químicas y biológicas decrecieron.

Temporal distribution of Aedes aegypti Linnaeus (Diptera, Culicidae), in a Hospital in Cuiabá, State of Mato Grosso, Brazil

This study aimed at registering and monitoring the presence of Aedes aegypti in the University Hospital Júlio Muller, Cuiabá-MT, as well as investigating the influence of temperature and rainfall on its temporal distribution and egg densities in ovitraps. The study was performed from April/2007 to March/2008, utilizing ovitraps with 10% of hay infusion and a wood paddle as an oviposition substrate. For surveillance, one ovitrap was placed in each of the 12 points distributed throughout the hospital. Ovitraps were collected monthly at the end of a 5-day installation period. After egg counting, wood paddles were immersed in water to allow larval eclosion for species identification through optical microscopy. Egg Density Index (EDI), Positive Ovitraps Index (POI), and Mean Number of Eggs (MNE) were used for data analysis. The presence of A. aegypti in the hospital was registered throughout the study period, except in July. The MNE was proportionally higher in the internal area (n= 8.47 eggs/paddle) when compared to the external area (n= 5.46 eggs/paddle), and was higher in September/October 2007 and January/February 2008. A significant increase in EDI, POI and MNE was registered in periods where the average temperature was higher, and the increase in POI was also concomitant with an increase in rainfall. The continuous presence of A. aegypti in the hospital throughout the study period, points out the need of including this mosquito in the arthropod control list in this environment. This is particularly important, considering that A. aegypti is an important vector of several arboviroses.