The Role of TET Proteins in the Epigenetic Regulation of Neural Gene Expression and Behavior

Understanding how genes affect behavior is critical to develop precise therapies for human behavioral disorders. The ability to investigate the relationship between genes and behavior has been greatly advanced over the last few decades due to progress in gene-targeting technology. Recently, the Tet gene family was discovered and implicated in epigenetic modification of DNA methylation by converting 5-methylcytosine to 5-hydroxymethylcytosine (5hmC). 5hmC and its catalysts, the TET proteins, are highly abundant in the postnatal brain but with unclear functions. To investigate their neural functions, we generated new lines of Tet1 and Tet3 mutant mice using a gene targeting approach. We designed both mutations to cause a frameshift by deleting the largest coding exon of Tet1 (Tet1Δe4) and the catalytic domain of Tet3 (Tet3Δe7-9). As Tet1 is also highly expressed in embryonic stem cells (ESCs), we generated Tet1 homozygous deleted ESCs through sequential targeting to compare the function of Tet1 in the brain to its role in ESCs. To test our hypothesis that TET proteins epigenetically regulate transcription of key neural genes important for normal brain function, we examined transcriptional and epigenetic differences in the Tet1Δe4 mouse brain. The oxytocin receptor (OXTR), a neural gene implicated in social behaviors, is suggested to be epigenetically regulated by an unknown mechanism. Interestingly, several human studies have found associations between OXTR DNA hypermethylation and a wide spectrum of behavioral traits and neuropsychiatric disorders including autism spectrum disorders. Here we report the first evidence for an epigenetic mechanism of Oxtr transcription as expression of Oxtr is reduced in the brains of Tet1Δe4-/- mice. Likewise, the CpG island overlapping the promoter of Oxtr is hypermethylated during early embryonic development and persists into adulthood. We also discovered altered histone modifications at the hypermethylated regions, indicating the loss of TET1 has broad effects on the chromatin structure at Oxtr. Unexpectedly, we discovered an array of novel mRNA isoforms of Oxtr that are selectively reduced in Tet1Δe4-/- mice. Additionally, Tet1Δe4-/- mice display increased agonistic behaviors and impaired maternal care and short-term memory. Our findings support a novel role for TET1 in regulating Oxtr expression by preventing DNA hypermethylation and implicate TET1 in social behaviors, offering novel insight into Oxtr epigenetic regulation and its role in neuropsychiatric disorders.

NOX-driven ROS formation in cell transformation of FLT3-ITD positive AML

In different types of myeloid leukemia, increased formation of reactive oxygen species (ROS) has been noted and associated with aspects of cell transformation including the promotion of leukemic cell proliferation and migration, as well as DNA-damage and accumulation of mutations. Work reviewed in this article has shown the involvement of NADPH oxidase (NOX)-derived ROS downstream of oncogenic protein-tyrosine kinases in both processes, and the related pathways have been partially identified. FLT3-ITD, an important oncoprotein in a subset of AML, causes activation of AKT and subsequently stabilization of p22phox, a regulatory subunit for NOX1-4. This process is linked to ROS formation and DNA damage. Moreover, FLT3-ITD signaling through STAT5 enhances expression of NOX4, ROS formation and inactivation of the protein-tyrosine phosphatase DEP-1/PTPRJ, a negative regulator of FLT3 signaling, by reversible oxidation of its catalytic cysteine residue. Genetic inactivation of NOX4 restored DEP-1 activity and attenuated cell transformation by FLT3-ITD in vitro and in vivo. Future work is required to further explore these mechanisms and their causal involvement in leukemic cell transformation, which may result in the identification of novel candidate targets for therapy.

Identification and Characterization of New Small Molecule Inhibitors of Picornavirus Replication

The Picornaviridae family consists of positive-strand RNA viruses that are the causative agents of a variety of diseases in humans and animals. Few drugs targeting picornaviruses are available, making the discovery of new antivirals a high priority. Here, we identified and characterized three compounds from a library of kinase inhibitors that block replication of poliovirus, coxsackievirus B3, and encephalomyocarditis virus. The antiviral effect of these compounds is not likely related to their known cellular targets because other inhibitors targeting the same pathways did not inhibit viral replication. Using an in vitro translation-replication system, we showed that these drugs inhibit different stages of the poliovirus life cycle. A4(1) inhibited the formation of a functional replication complex, while E5(1) and E7(2) affected replication after the replication complex had formed. A4(1) demonstrated partial protection from paralysis in a murine model of poliomyelitis. Poliovirus resistant to E7(2) had a single mutation in the 3A protein. This mutation was previously found to confer resistance to enviroxime-like compounds, which target either PI4KIIIβ (major enviroxime-like compounds) or OSBP (minor enviroxime-like compounds), cellular factors involved in lipid metabolism and shown to be important for replication of diverse positive-strand RNA viruses. We classified E7(2) as a minor enviroxime-like compound, because the localization of OSBP changed in the presence of this inhibitor. Interestingly, both E7(2) and major enviroxime-like compound GW5074 interfered with the viral polyprotein processing. Multiple attempts to isolate resistant mutants in the presence of A4(1) or E5(1) were unsuccessful, showing that effective broad-spectrum antivirals could be developed on the basis of these compounds. Studies with these compounds shed light on pathways shared by diverse picornaviruses that could be potential targets for the development of broad-spectrum antiviral drugs.

Does prenatal diagnosis modify neonatal treatment and early outcome of children with esophageal atresia?

International audience

Giza papilomabirusa eta umetoki lepoko minbizia: aldakortasun genetikoa, biomarkatzaileak eta epidemiologia

148 p.

Evaluación del efecto antitumoral de una fusoquina compuesta por ip10 y linfotactina en un modelo murino de cáncer de cérvix

El término “fusoquina” se utiliza para denominar a las proteínas de fusión compuestas por dos diferentes citocinas. Las citocinas son una familia de proteínas y glicoproteínas solubles que controlan la activación, proliferación e incluso la muerte celular programada de células del sistema inmune. Debido a su participación natural como inmunomoduladores se ha investigado su importancia en la regulación de microambiente tumoral. Dos de las quimiocinas que se han estudiado son IP10 y linfotactina. En nuestro equipo de trabajo se construyó previamente un vector adenoviral que expresa la fusión de estas quimiocinas. Por lo que el propósito de este trabajo fue evaluar el efecto antitumoral y antiangiogénico de este adenovirus. Para esto se produjeron las partículas virales a gran escala, se purificaron y cuantificaron por el método de punto final en placa. El modelo in vivo que se utilizó fue la cepa de ratón C57BL/6 y la línea tumoral de pulmón TC-1. Para determinar si el Ad-FIL incrementa el efecto antitumoral de la vacuna de DNA CRT/E7, los ratones fueron sensibilizados con ésta vacuna y posteriormente se les administraron los tratamientos Ad-Vacío, Ad-IP10, Ad-LPTN, Ad-IP10 + Ad-LPTN o Ad-FIL. Para le evaluación del efecto antiangiogénico los ratones fueron sacrificados y se obtuvieron los tumores, estos fueron procesados por la técnica histológica y se llevó a cabo una inmunohistoquímica para el marcador de vasos CD31. Finalmente se realizó un ensayo antitumoral empleando las mismas construcciones en un contexto de vacunas de DNA, para esto se emplearon dos grupos de ratones, uno de los grupos de ratones recibieron ambas vacunas de DNA (CRT/E7 + quimiocinas) mientras que el otro grupo de ratones recibieron solamente las quimocinas. La fusoquina FIL compuesta por IP10 y Linfotactina no presentó efecto antitumoral en el modelo estudiado; sin embargo, si presentó un efecto antiangiogénico significativo. Se deberá estudiar esta fusoquina en otros modelos y condiciones para continuar evaluando su efecto biológico, así como su utilidad al administrarla en combinación con otros tratamientos.

Evaluación del efecto citopático inducido por un adenovirus oncolítico en una línea celular murina utilizada como modelo de cáncer cervical

Los adenovirus oncolífticos ofrecen un tratamiento muy prometedor para combatir al cáncer. Estos virus se replican pobremente en células de ratón, por lo que para evaluar su eficacia para destruir tumores, usualmente se implantan células tumorales humanas en las cuales se replican los virus, pero con el inconveniente que se deben usar ratones inmunosuprimidos, para evitar que su sistema inmune elimine estas células por ser de diferente especie. Sin embargo, estos ratones no representan un modelo adecuado para evaluar la eficacia terapéutica de dichos adenovirus en ensayos preclfnicos, ya que carecen de mecanismos de defensa propios del sistema inmune que pudiesen coadyuvar en la protección contra el tumor y/o eliminación del adenovirus. Actualmente no existe un modelo de cáncer de cervix en ratones silvestres (inmunocompetentes) en los cuales los tumores se desarrollen a partir de celulas murinas y que los virus oncolfticos se repliquen eficientemente, al igual que en las células humanas, y se permita evaluar su efecto antitumoral. Se ha demostrado que los genes E6 y E7 del HPV-16 facilitan la replicación de los adenovirus. En este trabajo por primera vez se evalu6 1a capacidad de replicación de un adenovirus oncolftico en Ia lfrrea celular murina TC-1 Ia cual posee los genes E6 y E7 del HPV-16. Demostramos que el adenovirus oncolitico Adhz60 indujo en Ia lfnea TC-1 un efecto citopatico evidente, disminuye importantemente su viabilidad celular, indujo la expresión de proteínas virales tempranas y tardas, fue capaz de generar una progenie viral infectiva y de inducir apoptosis. Contribuciones y Conclusiones. Con nuestros resultados demostramos que la linea celular murina TC-1 es permisiva para la replican del virus oncolftico Adhz60. Por lo tanto, las células TC-1 pueden ser usadas como modelo tumoral para evaluar adenovirus oncoliticos en ratones inmunocompetentes.

Imunidade celular: caracterização das proteínas celulares que inibem a infecção viral

Dissertação para obtenção do grau de Mestre no Instituto Superior de Ciências da Saúde Egas Moniz

Complete genome sequence of Deltapapillomavirus 4 (bovine papillomavirus 2) from a bovine papillomavirus lesion in Amazon Region, Brazil

The complete genome sequence of bovine papillomavirus 2 (BPV2) from Brazilian Amazon Region was determined using multiple-primed rolling circle amplification followed by Illumina sequencing. The genome is 7,947 bp long, with 45.9% GC content. It encodes seven early (E1, E2, E4, E5, E6, E7, and E8) and two late (L1 and L2) genes. The complete genome of a BPV2 can help in future studies since this BPV type is highly reported worldwide although the lack of complete genome sequences available.

Functionalized Carbon Micro/Nanostructures for Biomolecular Detection

Advancements in the micro-and nano-scale fabrication techniques have opened up new avenues for the development of portable, scalable and easier-to-use biosensors. Over the last few years, electrodes made of carbon have been widely used as sensing units in biosensors due to their attractive physiochemical properties. The aim of this research is to investigate different strategies to develop functionalized high surface carbon micro/nano-structures for electrochemical and biosensing devices. High aspect ratio three-dimensional carbon microarrays were fabricated via carbon microelectromechanical systems (C-MEMS) technique, which is based on pyrolyzing pre-patterned organic photoresist polymers. To further increase the surface area of the carbon microstructures, surface porosity was introduced by two strategies, i.e. (i) using F127 as porogen and (ii) oxygen reactive ion etch (RIE) treatment. Electrochemical characterization showed that porous carbon thin film electrodes prepared by using F127 as porogen had an effective surface area (Aeff 185%) compared to the conventional carbon electrode. To achieve enhanced electrochemical sensitivity for C-MEMS based functional devices, graphene was conformally coated onto high aspect ratio three-dimensional (3D) carbon micropillar arrays using electrostatic spray deposition (ESD) technique. The amperometric response of graphene/carbon micropillar electrode arrays exhibited higher electrochemical activity, improved charge transfer and a linear response towards H2O2 detection between 250μM to 5.5mM. Furthermore, carbon structures with dimensions from 50 nano-to micrometer level have been fabricated by pyrolyzing photo-nanoimprint lithography patterned organic resist polymer. Microstructure, elemental composition and resistivity characterization of the carbon nanostructures produced by this process were very similar to conventional photoresist derived carbon. Surface functionalization of the carbon nanostructures was performed using direct amination technique. Considering the need for requisite functional groups to covalently attach bioreceptors on the carbon surface for biomolecule detection, different oxidation techniques were compared to study the types of carbon–oxygen groups formed on the surface and their percentages with respect to different oxidation pretreatment times. Finally, a label-free detection strategy using signaling aptamer/protein binding complex for platelet-derived growth factor oncoprotein detection on functionalized three-dimensional carbon microarrays platform was demonstrated. The sensor showed near linear relationship between the relative fluorescence difference and protein concentration even in the sub-nanomolar range with an excellent detection limit of 5 pmol.

Infección por virus sincitial respiratorio y su relación con valores de IGG en niños críticos

Antecedente: La infección por el virus sincitial respiratorio (VSR) representa una elevada morbimortalidad, y en algunos casos necesidad de manejo en unidades de cuidado intensivo pediátrico (UCIP). La respuesta inmunológica influye de manera directa en la expresión de la severidad y pronóstico de los pacientes con infección respiratoria. Metodología: Estudio de una cohorte retrospectiva de pacientes con infección respiratoria grave secundaria a VSR, sin historia de inmunodeficiencia, atendidos en la UCIP del Hospital Universitario Clínica San Rafael. Se realizó análisis descriptivoglobaly de acuerdo a la categorización de las prueba de IgG. Resultados: De 188 pacientes que ingresaron a la UCIP, 13% presentaron infección por VSR (24), con una edad promedio de 7,3 (DE=3,6) meses. Pertenecían al sexo masculino79,83%. Se encontró que 12,5% tenían un valor de IgGbajo para su edad, 58,33% tenían valores en límite inferior y el 29,17% dentro de rangos normales para su edad. En los pacientes con IgG baja, fue mayor la presentación de choque séptico que no responde a líquidos (100 vs 92 vs 86%), la mediana de días de ventilación mecánica fue mayor (8 vs 6 vs 5 respectivamente), así como la mortalidad (67 vs 7,1 vs 0%). Conclusión: Nuestra serie encontró que aquellos pacientes con niveles bajos o valores en el límite inferior de IgG sérica tuvieron mayor compromiso sistémico, mayor duración de ventilación mecánica y mayor mortalidad. Se necesitan estudios prospectivos que relaciones niveles bajos de IgG con severidad y pronostico en estos pacientes con infección grave por VSR.

Bridging the gap:exploring the cognitive impact of InterpretBank on Chinese interpreting trainees

This exploratory research project developed a cognitive situated approach to studying aspects of simultaneous interpreting with quantitative, confirmatory methods. To do so, it explored how to determine the potential benefits of using a computer-assisted interpreting tool, InterpretBank, among 22 Chinese interpreting trainees with Chinese L1 and English L2. The informants were mostly 2nd-year female students with an average age of 24.7 enrolled in Chinese MA interpreting programs. The study adopted a pretest and posttest design with three cycles. The independent variable was using Excel or InterpretBank. After Cycle I (pre-test), the sample split into control (Excel) and experimental (InterpretBank) groups. Tool choice was compulsory in Cycle II but not Cycle III. The source materials for each cycle were pairs of matching transcripts from popular science podcasts. Informants compiled glossaries out of one transcript, while the other one was edited for simultaneous interpreting, with 39 terms as potential problem triggers. Quantitative profiling results showed that InterpretBank informants spent less time on glossary compilation, generated more terms faster than Excel informants, but their glossaries were less diverse (personal) and longer. The booth tasks yielded no significant differences in fluency indicators except for more bumps (200-600ms silent time gaps) for InterpretBank in Cycle II. InterpretBank informants had more correct renditions in Cycles II and III but there was no statistically significant difference among accuracy indicators per cycle. Holistic quality assessments by PhD raters showed InterpretBank consistently outperforming Excel, suggesting a positive InterpretBank impact on SI quality. However, some InterpretBank implementations raised cognitive ergonomic concerns for Chinese, potentially undermining its utility. Overall, results were mixed regarding InterpretBank benefits for Chinese trainees, but the project was successful in developing cognitive situated interpreting study methods, constructs and indicators.