CCP1/Nna1 functions in protein turnover in mouse brain: Implications for cell death in Purkinje cell degeneration mice

Purkinje cell degeneration (pcd) mice have a mutation within the gene encoding cytosolic carboxypeptidase 1 (CCP1/Nna1), which has homology to metallocarboxypeptidases. To assess the function of CCP1/Nna1, quantitative proteomics and peptidomics approaches were used to compare proteins and peptides in mutant and wild-type mice. Hundreds of peptides derived from cytosolic and mitochondrial proteins are greatly elevated in pcd mouse hypothalamus, amygdala, cortex, prefrontal cortex, and striatum. However, the major proteins detected on 2-D gel electrophoresis were present in mutant and wild-type mouse cortex and hypothalamus at comparable levels, and proteasome activity is normal in these brain regions of pcd mice, suggesting that the increase in cellular peptide levels in the pcd mice is due to reduced degradation of the peptides downstream of the proteasome. Both nondegenerating and degenerating regions of pcd mouse brain, but not wild-type mouse brain, show elevated autophagy, which can be triggered by a decrease in amino acid levels. Taken together with previous studies on CCP1/Nna1, these data suggest that CCP1/Nna1 plays a role in protein turnover by cleaving proteasome-generated peptides into amino acids and that decreased peptide turnover in the pcd mice leads to cell death.-Berezniuk, I., Sironi, J., Callaway, M. B., Castro, L. M., Hirata, I. Y., Ferro, E. S., Fricker, L. D. CCP1/Nna1 functions in protein turnover in mouse brain: Implications for cell death in Purkinje cell degeneration mice. FASEB J. 24, 1813-1823 (2010). www.fasebj.org

Proteomic analysis of dog tears for potential cancer markers

The first reference map of the proteome of pooled normal dog tears was created using 2-dimensional polyacrylamide gel electrophoresis and the identity of a number of the major species determined using matrix-assisted laser desorption time of flight mass spectrometry (MALDI-TOF) and peptide mass fingerprint matching on protein sequence databases. In order to understand the changes in protein expression in the tear film of dogs with cancer, tears from such animals were similarly examined. A number of differences were found between the tears of healthy dogs and the dogs with cancer. Differences were found in levels of actin and albumin and in an unidentified protein which may be analogous to human lacryglobulin. These findings suggest that it may be possible to develop tear film analysis to provide a simple non-invasive test for the diagnosis and/or management of canine cancers. (C) 2007 Elsevier Ltd. All rights reserved.

Strategies to improve fertility in postpartum multiparous Bos indicus cows submitted to a fixed-time insemination protocol with gonadotropin-releasing hormone and prostaglandin F-2 alpha

In Exp. 1, we evaluated the effects of 2 lengths of progesterone exposure [CIDR (controlled intravaginal drug release); 7 vs. 14 d] before a modified CO-Synch protocol [50.0-mu g injection of GnRH 6.5 d before a 25.0-mg injection of PGF(2 alpha) followed by another injection of GnRH and fixed-time AI (TAI) 2 d after PGF(2 alpha)], with or without temporary weaning (TW) before GnRH treatments, on fertility of suckled multiparous Bos indicus cows (n = 283) and on calf performance. Timed AI pregnancy rates for cows receiving 7 d CIDR + TW, 7 d CIDR, 14 d CIDR + TW, and 14 d CIDR were 53, 47, 46, and 41%, respectively (P > 0.10). Calves submitted to two 48-h TW 6 d apart had decreased mean BW at 240 d (187.9 +/- 2.7 vs. 195.5 +/- 2.7 kg; P < 0.05), but BW at 420 d was not affected by TW (240.1 +/- 5.1 kg). In Exp. 2, we evaluated the effect of no treatment and treatment with or without a CIDR insert between GnRH and PGF(2 alpha) treatments of a modified CO-Synch protocol on pregnancy rate to TAI, and throughout a 90-d breeding season in suckled multiparous Bos indicus cows (n = 453). The inclusion of a CIDR between first GnRH and PGF(2 alpha) treatments of a modified CO-Synch protocol did not improve pregnancy rate (29 and 33% for cows receiving CO-Synch + CIDR and CO-Synch protocol, respectively), and cycling cows had poorer TAI pregnancy rates than anestrous cows treated with either synchronization protocol (21.7 vs. 40.7%; P < 0.05). However, regardless of treatment with CIDR, cows submitted to TAI protocol had greater (P < 0.05) pregnancy rates at 30 (54.8 vs. 11.2%), 60 (72.1 vs. 38.8%), and 90 d (82.0 vs. 57.9%) of breeding season than untreated cows.

Proteomic Characterization of the Hyaluronidase (EC 3.2.1.35) from the Venom of the Social Wasp Polybia paulista

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Superstrings in graviphoton background and N=1/2+3/2 supersymmetry

Motivated by Ooguri and Vafa, we study superstrings in flat R-4 in a constant self-dual graviphoton background. The supergravity equations of motion are satisfied in this background which deforms the N = 2 d = 4 flat space super-Poincare algebra to another algebra with eight supercharges. A D-brane in this space preserves a quarter of the supercharges; i.e. N = 1/2 supersymmetry is realized linearly, and the remaining N = 3/2 supersymmetry is realized nonlinearly. The theory on the brane can be described as a theory in noncommutative superspace in which the chiral fermionic coordinates theta(alpha) of N = 1 d = 4 superspace are not Grassman variables but satisfy a Clifford algebra.

Measurement of semileptonic branching fractions of B mesons to narrow D-** states - art. no. 1711803

Using the data accumulated in 2002-2004 with the D0 detector in proton-antiproton collisions at the Fermilab Tevatron collider with a center-of-mass energy of 1.96 TeV, the branching fractions of the decays B ->(D) over bar (0)(1)(2420)mu(+)nu(mu)X and B ->(D) over bar (*0)(2)(2460)mu(+)nu(mu)X and their ratio have been measured: B (b) over bar -> B)xB(B -> (D) over bar (0)(1)mu(+)nu(mu)X)xB((D) over bar (0)(1)-> D(*-)pi(+))=[0.087 +/- 0.007(stat)+/- 0.014(syst)]%; B((b) over bar -> B)xB(B ->(D) over bar (*0)(2)mu(+)nu(mu)X)xB((D) over bar (*0)(2)-> D(*-)pi(+))=[0.035 +/- 0.007(stat)+/- 0.008(syst)]% and [B(B ->(D) over bar (*0)(2)mu(+)nu(mu)X)xB((D) over bar (*0)(2)-> D(*-)pi(+))]/[B(B ->(D) over bar (0)(1)mu(+)nu(mu)X)xB((D) over bar (0)(1)-> D(*-)pi(+))]=0.39 +/- 0.09(stat)+/- 0.12(syst), where the charge conjugated states are always implied.

Paracoccidioides brasiliensis antigen batches from the same isolate show immunological and biochemical differences

We investigated the occurrence of antigenic and biochemical variability among Paracoccidioides brasiliensis antigen batches prepared according to the same protocol. Initially (experiment 1), we analyzed two antigen lots of two human isolates (Bt1 and Bt2), cultured in two media (PYG: bactopeptone, yeast extract, glucose; MMM: McVeigh and Morton medium) in SDS-PAGE and in two immunological tests (immunodiffusion-ID and footpad swelling test-FPT). Afterwards (experiment 2), we compared the antigenic profile of three antigen hatches from three human isolates (Bt1, Bt2 and Bt3) by two-dimensional immunoelectrophoresis (2 D-IEP) against a reference system for P. brasiliensis antigens. In experiment 1, there were important intra- and inter-strain antigenic differences between batches of the fungal isolates cultured on both media. The block titration of the antigen batches for the immunological tests revealed correlation between protein concentration and biological activity in ID and no correlation in FPT. In experiment 2, the reference system for P brasiliensis showed 26 antigen peaks. There were important differences between batches prepared from the same isolate and between batches from different isolates. Our data suggested the occurrence of instability in the synthesis of antigenic components by a same P. brasiliensis isolate, under controlled incubation conditions.

Superstrings in graviphoton background and N = 1/2 + 3/2 supersymmetry

Motivated by Ooguri and Vafa, we study superstrings in flat ℝ4 in a constant self-dual graviphoton background. The supergravity equations of motion are satisfied in this background which deforms the M = 2 d = 4 flat space super-Poincaré algebra to another algebra with eight supercharges. A D-brane in this space preserves a quarter of the supercharges; i.e. N = 1/2 supersymmetry is realized linearly, and the remaining N = 3/2 supersymmetry is realized nonlinearly. The theory on the brane can be described as a theory in noncommutative superspace in which the chiral fermionic coordinates θα of N = 1 d = 4 superspace are not Grassman variables but satisfy a Clifford algebra. © SISSA/ISAS 2003.

Solubilization of proteins from human lymph node tissue and two-dimensional gel storage.

In the present study, we compared six different solubilization buffers and optimized two-dimensional electrophoresis (2-DE) conditions for human lymph node proteins. In addition, we developed a simple protocol for 2-D gel storage. Efficient solubilization was obtained with lysis buffers containing (a) 8 M urea, 4% CHAPS (3-[(3-cholamidopropyl) dimethylammonio]-1-propanesulfonate), 40 mM Tris base, 65 mM DTT (dithiothreitol) and 0.2% carrier ampholytes; (b) 5 M urea, 2 M thiourea, 2% CHAPS, 2% SB 3-10 (N-decyl-N,N-dimethyl-3-ammonio-1-propanesulfonate), 40 mM Tris base, 65 mM DTT and 0.2% carrier ampholytes or (c) 7 M urea, 2 M thiourea, 4% CHAPS, 65 mM DTT and 0.2% carrier ampholytes. The optimal protocol for isoelectric focusing (IEF) was accumulated voltage of 16,500 Vh and 0.6% DTT in the rehydration solution. In the experiments conducted for the sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), best results were obtained with a doubled concentration (50 mM Tris, 384 mM glycine, 0.2% SDS) of the SDS electrophoresis buffer in the cathodic reservoir as compared to the concentration in the anodic reservoir (25 mM Tris, 192 mM glycine, 0.1% SDS). Among the five protocols tested for gel storing, success was attained when the gels were stored in plastic bags with 50% glycerol. This is the first report describing the successful solubilization and 2D-electrophoresis of proteins from human lymph node tissue and a 2-D gel storage protocol for easy gel handling before mass spectrometry (MS) analysis.

Migração 3-D Kirchhoff-Gaussian-Beam (KGB) pré-empilhamento no domínio da profundidade

O Feixe Gaussiano (FG) é uma solução assintótica da equação da elastodinâmica na vizinhança paraxial de um raio central, a qual se aproxima melhor do campo de ondas do que a aproximação de ordem zero da Teoria do Raio. A regularidade do FG na descrição do campo de ondas, assim como a sua elevada precisão em algumas regiões singulares do meio de propagação, proporciona uma forte alternativa na solução de problemas de modelagem e imageamento sísmicos. Nesta Tese, apresenta-se um novo procedimento de migração sísmica pré-empilhamento em profundidade com amplitudes verdadeiras, que combina a flexibilidade da migração tipo Kirchhoff e a robustez da migração baseada na utilização de Feixes Gaussianos para a representação do campo de ondas. O algoritmo de migração proposto é constituído por dois processos de empilhamento: o primeiro é o empilhamento de feixes (“beam stack”) aplicado a subconjuntos de dados sísmicos multiplicados por uma função peso definida de modo que o operador de empilhamento tenha a mesma forma da integral de superposição de Feixes Gaussianos; o segundo empilhamento corresponde à migração Kirchhoff tendo como entrada os dados resultantes do primeiro empilhamento. Pelo exposto justifica-se a denominação migração Kirchhoff-Gaussian-Beam (KGB). As principais características que diferenciam a migração KGB, durante a realização do primeiro empilhamento, de outros métodos de migração que também utilizam a teoria dos Feixes Gaussianos, são o uso da primeira zona de Fresnel projetada para limitar a largura do feixe e a utilização, no empilhamento do feixe, de uma aproximação de segunda ordem do tempo de trânsito de reflexão. Como exemplos são apresentadas aplicações a dados sintéticos para modelos bidimensionais (2-D) e tridimensionais (3-D), correspondentes aos modelos Marmousi e domo de sal da SEG/EAGE, respectivamente.

Estudo do perfil proteico nas membranas de espermatozóides congelados de caprinos

Pós-graduação em Medicina Veterinária - FMVZ

Abordagens biossintéticas em piper tuberculatum auxiliada pela síntese de precursores fenilpropanoídicos

Pós-graduação em Química - IQ

Treatment with vitamin D/MOG association suppresses experimental autoimmune encephalomyelitis

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Determination of the mercury fraction linked to protein of muscle and liver tissue of Tucunaré (Cichla spp.) from the Amazon Region of Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Revealing archaeal diversity patterns and methane fluxes in Admiralty Bay, King George Island, and their association to Brazilian Antarctic Station activities

The study of Antarctic archaeal communities adds information on the biogeography of this group and helps understanding the dynamics of biogenic methane production in such extreme habitats. Molecular methods were combined to methane flux determinations in Martel Inlet, Admiralty Bay, to assess archaeal diversity, to obtain information about contribution of the area to atmospheric methane budget and to detect possible interferences of the Antarctic Brazilian Station Comandante Ferraz (EACF) wastewater discharge on local archaeal communities and methane emissions. Methane fluxes in Martel Inlet ranged from 3.2 to 117.9 mu mol CH(4) m(-2) d(-1), with an average of 51.3 +/- 8.5 mu mol CH(4) m(-2) d(-1) and a median of 57.6 mu mol CH(4) m(-2)d(-1). However, three negative fluxes averaging -11.3 mu mol CH(4) m(-2) d(-1) were detected in MacKellar Inlet, indicating that Admiralty Bay can be either a source or sink of atmospheric methane. Denaturing gradient gel electrophoresis (DGGE) showed that archaeal communities at EACF varied with depth and formed a group separated from the reference sites. Granulometric analysis indicated that differences observed may be mostly related to sediment type. However, an influence of wastewater input could not be discarded, since higher methane fluxes were found at CF site. suggesting stimulation of local methanogenesis. DGGE profile of the wastewater sample grouped separated from all other samples, suggesting that methanogenesis stimulation may be due to changes in environmental conditions rather than to the input of allochtonous species from the wastewater. 16S ribosomal DNA clone libraries analysis showed that all wastewater sequences were related to known methanogenic groups belonging to the hydrogenotrophic genera Methanobacterium and Methanobrevibacter and the aceticlastic genus Methanosaeta. EACF and Botany Point sediment clone libraries retrieved only groups of uncultivated Archaea, with predominance of Crenarchaeota representatives (MCG, MG1, MBG-B, MBG-C and MHVG groups). Euryarchaeota sequences found were mostly related to the LDS and RC-V groups, but MBG-D and DHVE-5 were also present. No representatives of cultivated methanogenic groups were found, but coverage estimates suggest that a higher number of clones would have to be analyzed in order to cover the greater archaeal diversity of Martel Inlet sediment. Nevertheless, the analysis of the libraries revealed groups not commonly found by other authors in Antarctic habitats and also indicated the presence of groups of uncultivated archaea previously associated to methane rich environments or to the methane cycle. (C) 2010 Elsevier Ltd. All rights reserved.