Multi-Temporal Satellite Image Analysis Using Gene Expression Programming

This paper discusses an approach for river mapping and flood evaluation to aid multi-temporal time series analysis of satellite images utilizing pixel spectral information for image classification and region-based segmentation to extract water covered region. Analysis of Moderate Resolution Imaging Spectroradiometer (MODIS) satellite images is applied in two stages: before flood and during flood. For these images the extraction of water region utilizes spectral information for image classification and spatial information for image segmentation. Multi-temporal MODIS images from ``normal'' (non-flood) and flood time-periods are processed in two steps. In the first step, image classifiers such as artificial neural networks and gene expression programming to separate the image pixels into water and non-water groups based on their spectral features. The classified image is then segmented using spatial features of the water pixels to remove the misclassified water region. From the results obtained, we evaluate the performance of the method and conclude that the use of image classification and region-based segmentation is an accurate and reliable for the extraction of water-covered region.

An automatic correction method for the heel effect in digitized mammography images

The most significant radiation field nonuniformity is the well-known Heel effect. This nonuniform beam effect has a negative influence on the results of computer-aided diagnosis of mammograms, which is frequently used for early cancer detection. This paper presents a method to correct all pixels in the mammography image according to the excess or lack on radiation to which these have been submitted as a result of the this effect. The current simulation method calculates the intensities at all points of the image plane. In the simulated image, the percentage of radiation received by all the points takes the center of the field as reference. In the digitized mammography, the percentages of the optical density of all the pixels of the analyzed image are also calculated. The Heel effect causes a Gaussian distribution around the anode-cathode axis and a logarithmic distribution parallel to this axis. Those characteristic distributions are used to determine the center of the radiation field as well as the cathode-anode axis, allowing for the automatic determination of the correlation between these two sets of data. The measurements obtained with our proposed method differs on average by 2.49 mm in the direction perpendicular to the anode-cathode axis and 2.02 mm parallel to the anode-cathode axis of commercial equipment. The method eliminates around 94% of the Heel effect in the radiological image and the objects will reflect their x-ray absorption. To evaluate this method, experimental data was taken from known objects, but could also be done with clinical and digital images.

Estoque de biomassa e carbono florestal em unidades de paisagem na Amazônia: uma análise a partir da abordagem metodológica ecologia da paisagem

O presente trabalho tem por objetivo central demonstrar a variabilidade existente na floresta no que tange aos estoques de biomassa e carbono florestal acima do solo, a partir da identificação e caracterização, com base em técnicas de sensoriamento remoto, de unidades de paisagem em uma área situada no município de Belterra, região oeste do Estado do Pará, a partir da matriz teórico-conceitual da abordagem Ecologia da Paisagem. Para o alcance de tal proposição, a metodologia empregada partiu da revisão da literatura sobre o tema, aquisição de dados cartográficos e orbitais, uso de técnicas de sensoriamento remoto, coleta de dados em campo, tratamento e análise estatística. O trabalho está dividido em quatro capítulos, seguidos pelas considerações gerais da obra. Partindo da matriz teórico-metodológica da Ecologia da Paisagem, analisa-se a dinâmica socioambiental do município de Belterra, que atualmente experimenta a expansão das atividades agrícolas, com destaque para a agricultura mecanizada da soja. A partir da análise multitemporal de imagens Landsat do município pôde-se avaliar a distribuição da cobertura florestal existente no mesmo, bem como o padrão espacial de distribuição das principais unidades de paisagem identificadas. Considerando esse recorte, realizou-se a coleta de dados em campo via inventário florestal em quatro tipologias florestais (floresta de alto platô, floresta de baixo platô, vegetação secundária e tensão ecológica) para obtenção de parâmetros morfométricos da vegetação e posterior quantificação dos estoques de biomassa e carbono contidos em cada unidade, bem como observar o comportamento estrutural da floresta nas mesmas. A adoção da paisagem como escala espacial de análise mostrou-se bastante satisfatória na quantificação dos estoques de biomassa e carbono florestal ao permitir considerar a influência da dinâmica socioeconômica na redução desses estoques. Além disso, possibilitou constatar que o reconhecimento da heterogeneidade da cobertura florestal é um elemento fundamental para a obtenção de estimativas de carbono de acordo com as características estruturais da vegetação, que varia de acordo com a topografia do terreno, com as espécies existentes e com as características geográficas, o que envolve a tipologia climática, as características geomorfológicas, pedológicas e geológicas da área.

Charakteristika und zeitliche Merkmale des Blickrichtungsnacheffekts

In der vorliegenden Arbeit werden verschiedene, insbesondere zeitliche Aspekte des Blickrichtungsnacheffekts (gaze aftereffect) untersucht. Dieser Effekt besagt, dass nach längerer Betrachtung von Bildern, die Personen mit abgewandtem Blick zeigen, die Wahrnehmung von Blickrichtungen in Richtung des adaptierten Blickes verschoben ist. Betrachter halten dann zugewandte Blicke fälschlicherweise für in die Gegenrichtung verschoben, und Blicke in die Adaptationsblickrichtung fälschlicherweise für geradeaus, d.h. sie fühlen sich angeschaut, obwohl sie es nicht werden. In dieser Dissertation wird der Blickrichtungsnacheffekt mit vier psychophysischen Experimenten untersucht, in denen die Probanden einfache kategoriale Urteile über die Blickrichtung der Testbilder abzugeben hatten.rnrnDas erste Experiment untersucht die Induktion des Blickrichtungsnacheffekts. Es wird gezeigt, dass keine separate Adaptationsphase für die Induktion des Nacheffekts notwendig ist. Auch die alleinige, relativ kurze Darbietung des zur Adaptation verwendeten Reizes (TopUp-Display) vor der Präsentation eines Testbildes führt im Laufe wiederholter experimenteller Darbietungen zu einer Verschiebung der allgemeinen Blickrichtungs-Tuningkurve, sowie zu ihrer Verbreiterung. In einem zweiten Experiment wird nachgewiesen, dass die Ausprägung des Blickrichtungsnacheffekts von der jeweiligen Darbietungszeit des Adaptationsreizes abhängt. Zwar ist der Nacheffekt umso stärker, je länger das TopUp-Display gezeigt wird. Aber auch bei sehr kurzen Darbietungszeiten von einer Sekunde kommt der Effekt bereits zustande, hier zeigt sich eine lokal begrenztere Wirkung. Die Auswertung des zeitlichen Verlaufs ergibt, dass sich der Effekt rasch vollständig aufbaut und bereits innerhalb der ersten Darbietungen entsteht. Das dritte Experiment zeigt, dass dem Nacheffekt sowohl kurzfristige Einwirkungen der direkt vor dem Testbild erfolgten Reizung zugrunde liegen, als auch langfristige Memory-Effekte, die über die im Laufe des Experiments gegebenen Wiederholungen akkumuliert werden. Bei Blickwinkeln von 5° halten sich kurzfristige und langfristige Einwirkungen in etwa die Waage. Bei Blickwinkeln von 10° aber sind nur knapp 20% kurzfristig, und etwa 80% langfristige Einwirkungen für den Effekt verantwortlich. In einem vierten Experiment wird die zeitliche Rückbildung des Effekts untersucht und gezeigt, dass sich der Blickrichtungsnacheffekt im Kontrast zu seiner schnellen Entstehung langsam, nämlich innerhalb mehrerer Minuten zurückbildet.rnrnDie Diskussion der Ergebnisse kommt zu dem Schluss, dass die hier gefundene zeitliche Dynamik des Blickrichtungsnacheffekts Adaptationsprozesse auf höheren Schichten der visuellen Informationsverarbeitung als die zugrunde liegenden Mechanismen nahe legt.

Volume and shape in feature space on adaptive FCM in MRI segmentation.

Intensity non-uniformity (bias field) correction, contextual constraints over spatial intensity distribution and non-spherical cluster's shape in the feature space are incorporated into the fuzzy c-means (FCM) for segmentation of three-dimensional multi-spectral MR images. The bias field is modeled by a linear combination of smooth polynomial basis functions for fast computation in the clustering iterations. Regularization terms for the neighborhood continuity of either intensity or membership are added into the FCM cost functions. Since the feature space is not isotropic, distance measures, other than the Euclidean distance, are used to account for the shape and volumetric effects of clusters in the feature space. The performance of segmentation is improved by combining the adaptive FCM scheme with the criteria used in Gustafson-Kessel (G-K) and Gath-Geva (G-G) algorithms through the inclusion of the cluster scatter measure. The performance of this integrated approach is quantitatively evaluated on normal MR brain images using the similarity measures. The improvement in the quality of segmentation obtained with our method is also demonstrated by comparing our results with those produced by FSL (FMRIB Software Library), a software package that is commonly used for tissue classification.

Air photography Samoylov Island

For the qualitative description of surface properties like vegetation cover or land-water-ratio of Samoylov Island as well as for the evaluation of fetch homogeneity considerations of the eddy covariance measurements and for the up-scaling of chamber flux measurements, a detailed surface classification of the island at the sub-polygonal scale is necessary. However, up to know only grey-scale Corona satellite images from the 1960s with a resolution of 2 x 2 m and recent multi-spectral LandSat images with a resolution of 30 x 30 m were available for this region. Both are not useable for the desired classification because of missing spectral information and inadequate resolution, respectively. During the Lena 2003 expedition, a survey of the island by air photography was carried out in order to obtain images for surface classification. The photographs were taken from a helicopter on 10.07.2002, using a Canon EOS100 reflex camera, a Soligor 19-23 mm lens and colour slide film. The height from which the photographs were taken was approximately 600 meters. Due to limited flight time, not all the area of the island could be photographed and some regions could only be photographed with a slanted view. As a result, the images are of a varying quality and resolution. In Potsdam, after processing the films were scanned using a Nikon LS-2000 scanner at maximal resolution setting. This resulted in a ground resolution of the scanned images of approximately 0.3x0.3 m. The images were subsequently geo-referenced using the ENVI software and a referenced Corona image dating from 18.07.1964 (Spott, 2003). Geo-referencing was only possible for the Holocene river terrace areas; the floodplain regions in the western part of the island could not be referenced due to the lack of ground reference points. In Figure 3.7-1, the aerial view of Samoylov Island composed of the geo-referenced images is shown. Further work is necessary for the classification and interpretation of the images. If possible, air photography surveys will be carried out during future expeditions in order to determine changes in surface pattern and composition.

Extraction of subjective properties in image processing

Most of the present digital images processing methods are related with objective characterization of external properties as shape, form or colour. This information concerns objective characteristics of different bodies and is applied to extract details to perform several different tasks. But in some occasions, some other type of information is needed. This is the case when the image processing system is going to be applied to some operation related with living bodies. In this case, some other type of object information may be useful. As a matter of fact, it may give additional knowledge about its subjective properties. Some of these properties are object symmetry, parallelism between lines and the feeling of size. These types of properties concerns more to internal sensations of living beings when they are related with their environment than to the objective information obtained by artificial systems. This paper presents an elemental system able to detect some of the above-mentioned parameters. A first mathematical model to analyze these situations is reported. This theoretical model will give the possibility to implement a simple working system. The basis of this system is the use of optical logic cells, previously employed in optical computing.

Production, specificity, and functionality of monoclonal antibodies to specific peptide–major histocompatibility complex class II complexes formed by processing of exogenous protein

Several unanswered questions in T cell immunobiology relating to intracellular processing or in vivo antigen presentation could be approached if convenient, specific, and sensitive reagents were available for detecting the peptide–major histocompatibility complex (MHC) class I or class II ligands recognized by αβ T cell receptors. For this reason, we have developed a method using homogeneously loaded peptide–MHC class II complexes to generate and select specific mAb reactive with these structures using hen egg lysozyme (HEL) and I-Ak as a model system. mAbs specific for either HEL-(46–61)–Ak or HEL-(116–129)–Ak have been isolated. They cross-react with a small subset of I-Ak molecules loaded with self peptides but can nonetheless be used for flow cytometry, immunoprecipitation, Western blotting, and intracellular immunofluorescence to detect specific HEL peptide–MHC class II complexes formed by either peptide exposure or natural processing of native HEL. An example of the utility of these reagents is provided herein by using one of the anti-HEL-(46–61)–Ak specific mAbs to visualize intracellular compartments where I-Ak is loaded with HEL-derived peptides early after antigen administration. Other uses, especially for in vivo tracking of specific ligand-bearing antigen-presenting cells, are discussed.

Mathematical Morphology: Star/Galaxy Differentiation & Galaxy Morphology Classication

We present an application of Mathematical Morphology (MM) for the classification of astronomical objects, both for star/galaxy differentiation and galaxy morphology classification. We demonstrate that, for CCD images, 99.3 +/- 3.8% of galaxies can be separated from stars using MM, with 19.4 +/- 7.9% of the stars being misclassified. We demonstrate that, for photographic plate images, the number of galaxies correctly separated from the stars can be increased using our MM diffraction spike tool, which allows 51.0 +/- 6.0% of the high-brightness galaxies that are inseparable in current techniques to be correctly classified, with only 1.4 +/- 0.5% of the high-brightness stars contaminating the population. We demonstrate that elliptical (E) and late-type spiral (Sc-Sd) galaxies can be classified using MM with an accuracy of 91.4 +/- 7.8%. It is a method involving fewer 'free parameters' than current techniques, especially automated machine learning algorithms. The limitation of MM galaxy morphology classification based on seeing and distance is also presented. We examine various star/galaxy differentiation and galaxy morphology classification techniques commonly used today, and show that our MM techniques compare very favourably.

Photographic Plate Libraries at European Astronomical Observatories

ACM Computing Classification System (1998): J.2.

Determinação de cenários futuros de uso e cobertura do solo e sua influência na vulnerabilidade ambiental : o caso do município de Formosa – GO

Dissertação (mestrado)—Universidade de Brasília, Faculdade de Tecnologia, Departamento de Engenharia Civil e Ambiental, Programa de Pós-Graduação em Tecnologia Ambiental e Recursos Hídricos, 2015.

Vision-based place recognition : how low can you go?

In this paper we use the algorithm SeqSLAM to address the question, how little and what quality of visual information is needed to localize along a familiar route? We conduct a comprehensive investigation of place recognition performance on seven datasets while varying image resolution (primarily 1 to 512 pixel images), pixel bit depth, field of view, motion blur, image compression and matching sequence length. Results confirm that place recognition using single images or short image sequences is poor, but improves to match or exceed current benchmarks as the matching sequence length increases. We then present place recognition results from two experiments where low-quality imagery is directly caused by sensor limitations; in one, place recognition is achieved along an unlit mountain road by using noisy, long-exposure blurred images, and in the other, two single pixel light sensors are used to localize in an indoor environment. We also show failure modes caused by pose variance and sequence aliasing, and discuss ways in which they may be overcome. By showing how place recognition along a route is feasible even with severely degraded image sequences, we hope to provoke a re-examination of how we develop and test future localization and mapping systems.

Fluorescence detection of plant extracts that affect neuronal voltage-gated Ca2+ channels

Structurally novel compounds able to block voltage-gated Ca2+ channels (VGCCs) are currently being sought for the development of new drugs directed at neurological disorders. Fluorescence techniques have recently been developed to facilitate the analysis of VGCC blockers in a multi-well format. By utilising the small cell lung carcinoma cell line, NCI-H146, we were able to detect changes in intracellular Ca2+ concentration ([Ca2+]i) using a fluorescence microplate reader. NCI-H146 cells have characteristics resembling those of neuronal cells and express multiple VGCC subtypes, including those of the L-, N- and P-type. We found that K+-depolarisation of fluo-3 loaded NCI-H146 cells causes a rapid and transient increase in fluorescence, which was readily detected in a 96-well plate. Extracts of Australian plants, including those used traditionally as headache or pain treatments, were tested in this study to identify those affecting Ca2+ influx following membrane depolarisation of NCI-H146 cells. We found that E. bignoniiflora, A. symphyocarpa and E. vespertilio caused dose-dependent inhibition of K+-depolarised Ca2+ influx, with IC50 values calculated to be 234, 548 and 209 μg/ml, respectively. This data suggests an effect of these extracts on the function of VGCCs in these cells. Furthermore, we found similar effects using a fluorescence laser imaging plate reader (FLIPR) that allows simultaneous measurement of real-time fluorescence in a multi-well plate. Our results indicate that the dichloromethane extract of E. bignoniiflora and the methanolic extract of E. vespertilio show considerable promise as antagonists of neuronal VGCCs. Further analysis is required to characterise the function of the bioactive constituents in these extracts and determine their selectivity on VGCC subtypes.

A feasibility study of multislice x-ray CT imaging of gel dosimeters using the “zero scan” method

This study extends the ‘zero scan’ method for CT imaging of polymer gel dosimeters to include multi-slice acquisitions. Multi slice CT images consisting of 24 slices of 1.2 mm thickness were acquired of an irradiated polymer gel dosimeter, and processed with the zero scan technique. The results demonstrate that zero scan based gel readout can be successfully applied to generate a three dimensional image of the irradiated gel field. Compared to the raw CT images the processed figures and cross gel profiles demonstrated reduced noise and clear visibility of the penumbral region. Moreover these improved results further highlight the suitability of this method in volumetric reconstruction with reduced CT data acquisition per slice. This work shows that 3D volumes of irradiated polymer gel dosimeters can be acquired and processed with x-ray CT.

A Real-time clustering system for spatio-temporal signals from network of neurons

Over past few years, the studies of cultured neuronal networks have opened up avenues for understanding the ion channels, receptor molecules, and synaptic plasticity that may form the basis of learning and memory. The hippocampal neurons from rats are dissociated and cultured on a surface containing a grid of 64 electrodes. The signals from these 64 electrodes are acquired using a fast data acquisition system MED64 (Alpha MED Sciences, Japan) at a sampling rate of 20 K samples with a precision of 16-bits per sample. A few minutes of acquired data runs in to a few hundreds of Mega Bytes. The data processing for the neural analysis is highly compute-intensive because the volume of data is huge. The major processing requirements are noise removal, pattern recovery, pattern matching, clustering and so on. In order to interface a neuronal colony to a physical world, these computations need to be performed in real-time. A single processor such as a desk top computer may not be adequate to meet this computational requirements. Parallel computing is a method used to satisfy the real-time computational requirements of a neuronal system that interacts with an external world while increasing the flexibility and scalability of the application. In this work, we developed a parallel neuronal system using a multi-node Digital Signal processing system. With 8 processors, the system is able to compute and map incoming signals segmented over a period of 200 ms in to an action in a trained cluster system in real time.