Aplicação eletroanalítica de complexos oxo-manganês biomimetizadores de centros ativos enzimáticos na determinação de espécies de interesse analítico

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Polymerisation in perfluorierter Emulsion

Die vorliegende Arbeit behandelt die Polymerisation in nicht-wässrigen Emulsionen – bestehend aus einem perfluorierten Solvens und einem Kohlenwasserstoff - unter Einsatz verschiedener Monomere, Katalysatoren und Polymeristionsmethoden zur Generierung von Polymerpartikeln verschiedenster Art. Es wurde gezeigt, dass in diesen inerten Medien zahlreiche Methoden zur Polymererzeugung unter gleichzeitiger Morphologiekontrolle eingesetzt werden können, die in konventionellen wässrigen, heterophasischen Systemen versagen.rnrnAusgangspunkt war die literaturbekannte Metallocen-katalysierte Synthese von Polyethylen (PE)- und Polypropylen (PP)-Nanopartikeln in perfluorierter Emulsion in Gegenwart hochmolekularer Blockcopolymere als Stabilisierungsagens. Mithilfe kinetischer Untersuchungen hinsichtlich der PE-Synthese wurde im Rahmen dieser Arbeit ein Modell entwickelt, welches den Diffusionsweg eines gasförmigen Monomers über die verschiedenen Phasengrenzen hinweg zum aktiven katalytischen Zentrum in der dispergierten Phase beschreibt. Ferner konnte die Diffusions- und Reaktionsbestimmtheit der Reaktion in Abhängigkeit verschiedener Reaktionsparameter nachgewiesen sowie ein tieferer Einblick über den Ort der Polymerisation in den heterophasischen Systemen erhalten werden.rnrnDie so gewonnenen Erkenntnisse wurden für die erfolgreiche Synthese von Poly(ethylen-1-hexen)-Copolymeren in perfluorierter Emulsion genutzt, wobei der Comonomergehalt im resultierenden Polymer über einen breiten Bereich variiert werden konnte. Neben der Homo- und Copolymerisation von Polyolefinen wurde in der vorliegenden Arbeit weiter gezeigt, dass die heterogenen Fluide zum Aufbau komplexerer Morphologien wie Kern-Schale-Nanopartikeln genutzt werden können; so gelangte man zu Partikeln mit Kernen aus isotaktischem PP, ummantelt von „weichem“ Poly(n-butylacrylat).rnrnEin weiterer Fokus dieser Arbeit lag auf der Erweiterung der Anwendungsmöglichkeiten der perfluorierten Emulsionen, und so wurde bspw. der Zugang zu Polymerdispersionen aus konjugierten Materialien mit Partikeldurchmessern von 70-100 nm mittels Cyclopolymerisation eröffnet. Ferner konnten als bioverträgliche und biologisch abbaubare Materialien Partikel aus epsilon-Caprolacton in koordinativ-anionischer Polymerisation gewonnen werden. Im Zuge dessen wurden Emulgatoren entwickelt, die den Einsatz polarer Monomere in perfluorierter Emulsion erlauben.rnrnSchlussendlich konnten mittels trifunktioneller Polymere mit lipophilen und fluorophilen Gruppen sowie Lewis-basischen Ankergruppen Ag- und Cu-Partikel dergestalt oberflächenmodifiziert werden, dass ein homogenes Einbetten in eine perfluorierte Matrix möglich war, was antibakterielle perfluorierte Werkstoffe - erwiesen an E. coli - lieferte.

Atomic mutagenesis of the ribosomal Sarcin-Ricin-Loop to study EF-G GTPase activation

Translocation factor EF-G, possesses a low basal GTPase activity, which is stimulated by the ribosome. One potential region of the ribosome that triggers GTPase activity of EF-G is the Sarcin-Ricin-Loop (SRL) (helix 95) in domain VI of the 23S rRNA. Structural data showed that the tip of the SRL closely approaches GTP in the active center of EF-G, structural probing data confirmed that EF-G interacts with nucleotides G2655, A2660, G2661 and A2662.1-3 The exocyclic group of adenine at A2660 is required for stimulation of EF-G GTPase activity by the ribosome as demonstrated using atomic mutagenesis.4 Recent crystal structures of EF-G on the ribosome, gave more insights into the molecular mechanism of EF-G GTPase activity.5 Based on the structure of EF-Tu on the ribosome1, the following mechanism of GTPase activation was proposed: upon binding of EF-G to the ribosome, the conserved His92 (E.coli) changes its position, pointing to the γ-phosphate of GTP. In this activated state, the phosphate of residue A2662 of the SRL positions the catalytic His in its active conformation. It was further proposed that the phosphate oxygen of A2662 is involved in a charge-relay system, enabling GTP hydrolysis. In order to test this mechanism, we use the atomic mutagenesis approach, which allows introducing non-natural modifications in the SRL, in the context of the complete 70S ribosome. Therefore, we replaced one of the non-bridging oxygens of A2662 by a methyl group. A methylphosphonat is not able to position or activate a histidine, as it has no free electrons and therefore no proton acceptor function. These modified ribosomes were then tested for stimulation of EF-G GTPase activity. First experiments show that one of the two stereoisomers incorporated into ribosomes does not stimulate GTPase activity of EF-G, whereas the other is active. From this we conclude that indeed the non-bridging phosphate oxygen of A2662 is involved in EF-G GTPase activation by the ribosome. Ongoing experiments aim at revealing the contribution of this non-bridging oxygen at A2662 to the mechanism of EF-G GTPase activation at the atomic level.

Atomic mutagenesis of the ribosomal Sarcin-Ricin-Loop to study EF-G GTPase activation

Translocation factor EF-G, possesses a low basal GTPase activity, which is stimulated by the ribosome. One potential region of the ribosome that triggers GTPase activity of EF-G is the Sarcin-Ricin-Loop (SRL) (helix 95) in domain VI of the 23S rRNA. Structural data showed that the tip of the SRL closely approaches GTP in the active center of EF-G, structural probing data confirmed that EF-G interacts with nucleotides G2655, A2660, G2661 and A2662.1-3 The exocyclic group of adenine at A2660 is required for stimulation of EF-G GTPase activity by the ribosome as demonstrated using atomic mutagenesis.4 Recent crystal structures of EF-G on the ribosome, gave more insights into the molecular mechanism of EF-G GTPase activity.5 Based on the structure of EF-Tu on the ribosome1, the following mechanism of GTPase activation was proposed: upon binding of EF-G to the ribosome, the conserved His92 (E.coli) changes its position, pointing to the γ-phosphate of GTP. In this activated state, the phosphate of residue A2662 of the SRL positions the catalytic His in its active conformation. It was further proposed that the phosphate oxygen of A2662 is involved in a charge-relay system, enabling GTP hydrolysis. In order to test this mechanism, we use the atomic mutagenesis approach, which allows introducing non-natural modifications in the SRL, in the context of the complete 70S ribosome. Therefore, we replaced one of the non-bridging oxygens of A2662 by a methyl group. A methylphosphonat is not able to position or activate a histidine, as it has no free electrons and therefore no proton acceptor function. These modified ribosomes were then tested for stimulation of EF-G GTPase activity. First experiments show that one of the two stereoisomers incorporated into ribosomes does not stimulate GTPase activity of EF-G, whereas the other is active. From this we conclude that indeed the non-bridging phosphate oxygen of A2662 is involved in EF-G GTPase activation by the ribosome. Ongoing experiments aim at revealing the contribution of this non-bridging oxygen at A2662 to the mechanism of EF-G GTPase activation at the atomic level.

Sulphur and iron species in Dvurechenskii mud volcano sediments

The deep Black Sea is known to be depleted in electron-acceptors for sulphide oxidation. This study on depth distributions of sulphur species (S(II), S(0),S(n)**2-,S2O3**2-,SO3**2-,SO4**2-) in the Dvurechenskii mud volcano, a cold seep situated in the permanently anoxic eastern Black Sea basin (Sorokin Trough, 2060 m water depth), showed remarkable concentrations of sulphide oxidation products. Sulphite concentrations of up to 11 µmol L**1-, thiosulphate concentrations of up to 22 µmol L**1-, zero-valent sulphur concentrations of up to 150 µmol L**1- and up to five polysulphide species were measured in the upper 20 cm of the sediment. Electron-acceptors found to be available in the Dvurechenskii mud volcano (DMV) for the oxidation of hydrogen sulphide to sulphide oxidation intermediates are iron-minerals, and probably also reactive manganese phases. Up to 60 µmol g**1- of reactive iron-minerals and up to 170 µmol L**1- dissolved iron was present in the central summit with the highest fluid upflow and fresh mud outflow. Thus, the source for the oxidative power in the DMV are reactive iron phases extruded with the mud from an ancient source in the deeply buried sediments, leading to the formation of various sulphur intermediates in comparably high concentrations. Another possible source of sulphide oxidation intermediates in DMV sediments could be the formation of zero-valent sulphur by sulphate dependent anaerobic microbial oxidation of methane followed by disproportionation of zero-valent sulphur. Sulphide oxidation intermediates, which are produced by these processes, do not reach thermodynamic equilibrium with rhombic sulphur, especially close to the active center of the DMV due to a short equilibration time. Thus, mud volcano sediments, such as in the DMV, can provide oxidizing niches even in a highly reduced environment like the abyssal part of the Black Sea.

Los extranjeros de Buenos Aires en los albores del siglo XIX : Algunos rasgos de su composición

Para el período colonial tardío, Buenos Aires era una ciudad diferente del resto de Hispanoamérica, tanto en términos de su cultura como en sus manifestaciones sociales y en su crecimiento poco común. Bastaron poco más de tres décadas para que la pequeña aldea se transformara en una pujante ciudad hispanoamericana. La clave de esta transformación estuvo dada a lo largo de todo el siglo XVIII, dado que éste fue un período de profundos cambios político-sociales y Buenos Aires no fue la excepción. La ciudad comenzó a cambiar en todos sus aspectos. En primer lugar el conflicto de la España Borbónica con Inglaterra y Portugal llevó a introducir cambios profundos en la política española para el control estricto de las colonias en los bordes del imperio. La creación del Virreinato del Río de la Plata en 1776 y la extensión de la ordenanza de libre comercio dos años más tarde otorgaron un gran empuje a la ciudad. De este modo, Buenos Aires pasó a ser un activo polo de atracción tanto para los migrantes internos como para los externos del imperio español. Estos motivos provocaron mutaciones a nivel político, social y arquitectónico, dando lugar a un crecimiento único para una ciudad hispanoamericana entre 1750 y 1810

Los extranjeros de Buenos Aires en los albores del siglo XIX : Algunos rasgos de su composición

Para el período colonial tardío, Buenos Aires era una ciudad diferente del resto de Hispanoamérica, tanto en términos de su cultura como en sus manifestaciones sociales y en su crecimiento poco común. Bastaron poco más de tres décadas para que la pequeña aldea se transformara en una pujante ciudad hispanoamericana. La clave de esta transformación estuvo dada a lo largo de todo el siglo XVIII, dado que éste fue un período de profundos cambios político-sociales y Buenos Aires no fue la excepción. La ciudad comenzó a cambiar en todos sus aspectos. En primer lugar el conflicto de la España Borbónica con Inglaterra y Portugal llevó a introducir cambios profundos en la política española para el control estricto de las colonias en los bordes del imperio. La creación del Virreinato del Río de la Plata en 1776 y la extensión de la ordenanza de libre comercio dos años más tarde otorgaron un gran empuje a la ciudad. De este modo, Buenos Aires pasó a ser un activo polo de atracción tanto para los migrantes internos como para los externos del imperio español. Estos motivos provocaron mutaciones a nivel político, social y arquitectónico, dando lugar a un crecimiento único para una ciudad hispanoamericana entre 1750 y 1810

Los extranjeros de Buenos Aires en los albores del siglo XIX : Algunos rasgos de su composición

Para el período colonial tardío, Buenos Aires era una ciudad diferente del resto de Hispanoamérica, tanto en términos de su cultura como en sus manifestaciones sociales y en su crecimiento poco común. Bastaron poco más de tres décadas para que la pequeña aldea se transformara en una pujante ciudad hispanoamericana. La clave de esta transformación estuvo dada a lo largo de todo el siglo XVIII, dado que éste fue un período de profundos cambios político-sociales y Buenos Aires no fue la excepción. La ciudad comenzó a cambiar en todos sus aspectos. En primer lugar el conflicto de la España Borbónica con Inglaterra y Portugal llevó a introducir cambios profundos en la política española para el control estricto de las colonias en los bordes del imperio. La creación del Virreinato del Río de la Plata en 1776 y la extensión de la ordenanza de libre comercio dos años más tarde otorgaron un gran empuje a la ciudad. De este modo, Buenos Aires pasó a ser un activo polo de atracción tanto para los migrantes internos como para los externos del imperio español. Estos motivos provocaron mutaciones a nivel político, social y arquitectónico, dando lugar a un crecimiento único para una ciudad hispanoamericana entre 1750 y 1810

Optical detection of cytochrome P450 by sensitizer-linked substrates

The ability to detect, characterize, and manipulate specific biomolecules in complex media is critical for understanding metabolic processes. Particularly important targets are oxygenases (cytochromes P450) involved in drug metabolism and many disease states, including liver and kidney dysfunction, neurological disorders, and cancer. We have found that Ru photosensitizers linked to P450 substrates specifically recognize submicromolar cytochrome P450cam in the presence of other heme proteins. In the P450:Ru-substrate conjugates, energy transfer to the heme dramatically accelerates the Ru-luminescence decay. The crystal structure of a P450cam:Ru-adamantyl complex reveals access to the active center via a channel whose depth (Ru-Fe distance is 21 Å) is virtually the same as that extracted from an analysis of the energy-transfer kinetics. Suitably constructed libraries of sensitizer-linked substrates could be employed to probe the steric and electronic properties of buried active sites.

Studies on the enzymatic and transcriptional activity of the dimerization cofactor for hepatocyte nuclear factor 1

The relationship between the enzymatic and the transcriptional activity of the bifunctional protein pterin-4a-carbinolamine dehydratase/dimerization cofactor for hepatocyte nuclear factor 1 (DCoH) has been elucidated by site-directed mutagenesis. DCoH dimers harbor a binding site for hepatocyte nuclear factor 1 (HNF1), two active centers that bind pterins, and a saddle-shaped surface that resembles nucleic acid binding domains. Two domains of the protein have been selectively targeted to determine if a change in one activity affects the other. No strong correlation has been found, supporting the idea that carbinolamine dehydratase activity is not required for HNF1 binding in vitro or transcriptional coactivation in vivo. Double mutations in the active center, however, influence the in vivo transcriptional activity but not HNF1 binding. This finding suggests that some active center residues also are used during transcription, possibly for binding of another (macro)molecule. Several mutations in the saddle led to a surprising increase in transcription, therefore linking this domain to transcriptional regulation as well. The transcriptional function of DCoH therefore is composed of two parts, HNF1 binding and another contributing effect that involves the active site and, indirectly, the saddle.

Characterization of the wild-type form of 4a-carbinolamine dehydratase and two naturally occurring mutants associated with hyperphenylalaninemia.

The characterization of 4a-carbinolamine dehydratase with the enzymatically synthesized natural substrate revealed non-Michaelis-Menten kinetics. A Hill coefficient of 1.8 indicates that the dehydratase exists as a multisubunit enzyme that shows cooperativity. A mild form of hyperphenylalaninemia with high 7-biopterin levels has been linked to mutations in the human 4a-carbinolamine dehydratase gene. We have now cloned and expressed two mutant forms of the protein based on a patient's DNA sequences. The kinetic parameters of the mutant C82R reveal a 60% decrease in Vmax but no change in Km (approximately 5 microM), suggesting that the cysteine residue is not involved in substrate binding. Its replacement by arginine possibly causes a conformational change in the active center. Like the wild-type enzyme, this mutant is heat stable and forms a tetramer. The susceptibility to proteolysis of C82R, however, is markedly increased in vitro compared with the wild-type protein. We have also observed a decrease in the expression levels of C82R protein in transfected mammalian cells, which could be due to proteolytic instability. The 18-amino acid-truncated mutant GLu-87--> termination could not be completely purified and characterized due to minute levels of expression and its extremely low solubility as a fusion protein. No dehydratase activity was detected in crude extracts from transformed bacteria or transfected mammalian cells. Considering the decrease in specific activity and stability of the mutants, we conclude that the patient probably has less than 10% residual dehydratase activity, which could be responsible for the mild hyperphenylalaninemia and the high 7-biopterin levels.

In vitro trans-splicing in Saccharomyces cerevisiae.

The interactions established at the 5'-splice site during spliceosome assembly are likely to be important for both precise recognition of the upstream intron boundary and for positioning this site in the active center of the spliceosome. Definition of the RNA-RNA and the RNA-protein interactions at the 5' splice site would be facilitated by the use of a small substrate amenable to modification during chemical synthesis. We describe a trans-splicing reaction performed in Saccharomyces cerevisiae extracts in which the 5' splice site and the 3' splice site are on separate molecules. The RNA contributing the 5' splice site is only 20 nucleotides long and was synthesized chemically. The trans-splicing reaction is accurate and has the same sequence, ATP, and Mg2+ requirements as cis-splicing. We also report how deoxy substitutions around the 5'-splice site affect trans-splicing efficiency.

Mechanisms of chloroperoxidase-catalyzed enantioselective reactions as probed by site-directed mutagenesis and isotopic labeling

Chloroperoxidase (CPO) is a heme-containing glycoprotein secreted by the marine fungus Caldariomyces fumago. Chloroperoxidase contains one ferriprotoporphyrin IX prosthetic group per molecule and catalyzes a variety of reactions, such as halogenation, peroxidation and epoxidation. The versatile catalytic activities of CPO coupled with the increasing demands for chiral synthesis have attracted an escalating interest in understanding the mechanistic and structural properties of this enzyme. In order to better understand the mechanisms of CPO-catalyzed enantioselective reactions and to fine-tune the catalytic properties of chloroperoxidase, asparagine 74 (N74) located in the narrow substrate access channel of CPO was replaced by a bulky, nonpolar valine and a polar glutamine using site-directed mutagenesis. The CPO N74 mutants displayed significantly enhanced activity toward nonpolar substrates compared to wild-type CPO as a result of changes in space and polarity of the heme distal environment. More interestingly, N74 mutants showed dramatically decreased chlorination and catalase activity but significantly enhanced epoxidation activity as a consequence of improved kinetic perfection introduced by the mutation as reflected by the favorable changes in k cat and kcat/KM of these reactions. It is also noted that the N74V mutant is capable of decomposing cyanide, the most notorious poison for many hemoproteins, as judged by the unique binding behavior of N74V with potassium cyanide. Histidine 105 (H105) was replaced by a nonpolar amino acid alanine using site-directed mutagenesis. The CPO H105 mutant (H105A) displayed dramatically decreased chlorination and catalase activity possibly because of the decreased polarity in the heme distal environment and loss of the hydrogen bonds between histidine 105 and glutamic acid 183. However, significantly increased enantioselectivity was observed for the epoxidation of bulky styrene derivatives. Furthermore, my study provides strong evidence for the proposed histidine/cysteine ligand switch in chloroperoxidase, providing experimental support for the structure of the 420-nm absorption maximum for a number of carbon monoxide complexes of heme-thiolate proteins. For the NMR study, [dCPO(heme)] was produced using 90% deuterated growth medium with excess heme precursors and [dCPO(Phe)] was grown in the same highly deuterated medium that had been supplemented with excess natural phenylalanine. To make complete heme proton assignments, NMR spectroscopy has been performed for high-resolution structural characterization of [dCPO(heme)] and [dCPO(Phe)] to achieve unambiguous and complete heme proton assignments, which also allows important amino acids close to the heme active center to be determined.

Mechanisms of Chloroperoxidase-catalyzed Enantioselective Reactions as Probed by Site-directed Mutagenesis and Isotopic Labeling

Chloroperoxidase (CPO) is a heme-containing glycoprotein secreted by the marine fungus Caldariomyces fumago. Chloroperoxidase contains one ferriprotoporphyrin IX prosthetic group per molecule and catalyzes a variety of reactions, such as halogenation, peroxidation and epoxidation. The versatile catalytic activities of CPO coupled with the increasing demands for chiral synthesis have attracted an escalating interest in understanding the mechanistic and structural properties of this enzyme. In order to better understand the mechanisms of CPO-catalyzed enantioselective reactions and to fine-tune the catalytic properties of chloroperoxidase, asparagine 74 (N74) located in the narrow substrate access channel of CPO was replaced by a bulky, nonpolar valine and a polar glutamine using site-directed mutagenesis. The CPO N74 mutants displayed significantly enhanced activity toward nonpolar substrates compared to wild-type CPO as a result of changes in space and polarity of the heme distal environment. More interestingly, N74 mutants showed dramatically decreased chlorination and catalase activity but significantly enhanced epoxidation activity as a consequence of improved kinetic perfection introduced by the mutation as reflected by the favorable changes in kcat and kcat/KM of these reactions. It is also noted that the N74V mutant is capable of decomposing cyanide, the most notorious poison for many hemoproteins, as judged by the unique binding behavior of N74V with potassium cyanide. Histidine 105 (H105) was replaced by a nonpolar amino acid alanine using site-directed mutagenesis. The CPO H105 mutant (H105A) displayed dramatically decreased chlorination and catalase activity possibly because of the decreased polarity in the heme distal environment and loss of the hydrogen bonds between histidine 105 and glutamic acid 183. However, significantly increased enantioselectivity was observed for the epoxidation of bulky styrene derivatives. Furthermore, my study provides strong evidence for the proposed histidine/cysteine ligand switch in chloroperoxidase, providing experimental support for the structure of the 420-nm absorption maximum for a number of carbon monoxide complexes of heme-thiolate proteins. For the NMR study, [dCPO(heme)] was produced using 90% deuterated growth medium with excess heme precursors and [dCPO(Phe)] was grown in the same highly deuterated medium that had been supplemented with excess natural phenylalanine. To make complete heme proton assignments, NMR spectroscopy has been performed for high-resolution structural characterization of [dCPO(heme)] and [dCPO(Phe)] to achieve unambiguous and complete heme proton assignments, which also allows important amino acids close to the heme active center to be determined.

The tetranuclear copper active site of nitrous oxide reductase: the CuZ center

J Biol Inorg Chem (2011) 16:183–194 DOI 10.1007/s00775-011-0753-3