3D information visualisation: An historical perspective

The use of 3D visualisation of digital information is a recent phenomenon. It relies on users understanding 3D perspectival spaces. Questions about the universal access of such spaces has been debated since its inception in the European Renaissance. Perspective has since become a strong cultural influence in Western visual communication. Perspective imaging assists the process of experimenting by the sketching or modelling of ideas. In particular, the recent 3D modelling of an essentially non-dimensional Cyber-space raises questions of how we think about information in general. While alternate methods clearly exist they are rarely explored within the 3D paradigm (such as Chinese isometry). This paper seeks to generate further discussion on the historical background of perspective and its role in underpinning this emergent field. © 2005 IEEE.

Multiphase flow in the vascular system of wood: From microscopic exploration to 3-D Lattice Boltzmann experiments

This paper provides insights into liquid free water dynamics in wood vessels based on Lattice Boltzmann experiments. The anatomy of real wood samples was reconstructed from systematic 3-D analyses of the vessel contours derived from successive microscopic images. This virtual vascular system was then used to supply fluid-solid boundary conditions to a two-phase Lattice Boltzmann scheme and investigate capillary invasion of this hydrophilic porous medium. Behavior of the liquid phase was strongly dependent on anatomical features, especially vessel bifurcations and reconnections. Various parameters were examined in numerical experiments with ideal vessel bifurcations, to clarify our interpretation of these features. (c) 2010 Elsevier Ltd. All rights reserved.

Criação de um sistema de apoio para o suporte avançado de vida

Dissertação de mestrado integrado em Engenharia Biomédica (área de especialização em Eletrónica Médica)

Preliminary regional rockfall hazard mapping using LIDAR-based slope frequency distribution and CONEFALL modeling

A factor limiting preliminary rockfall hazard mapping at regional scale is often the lack of knowledge of potential source areas. Nowadays, high resolution topographic data (LiDAR) can account for realistic landscape details even at large scale. With such fine-scale morphological variability, quantitative geomorphometric analyses become a relevant approach for delineating potential rockfall instabilities. Using digital elevation model (DEM)-based ?slope families? concept over areas of similar lithology and cliffs and screes zones available from the 1:25,000 topographic map, a susceptibility rockfall hazard map was drawn up in the canton of Vaud, Switzerland, in order to provide a relevant hazard overview. Slope surfaces over morphometrically-defined thresholds angles were considered as rockfall source zones. 3D modelling (CONEFALL) was then applied on each of the estimated source zones in order to assess the maximum runout length. Comparison with known events and other rockfall hazard assessments are in good agreement, showing that it is possible to assess rockfall activities over large areas from DEM-based parameters and topographical elements.

Meesauunin polttovyöhykkeen lämmönsiirron ja palamisen mallinnus

Tälle diplomityölle on antanut alkusysäyksen tarve kehittää käytössä olevaa meesauunin simulointiohjelmaa. Simulointiohjelma mallintaa meesauunin stationaaritilan toimintaa. Sillä voidaan tutkia uunin konstruktion muutosten vaikutuksia uunin toimintaan. Ohjelma on tehty 1980-luvun alkupuolella. Sen aikaisten tietokoneiden laskentatehojen vuoksi ohjelman käyttämään laskentamalliin on jouduttu tekemään joukko erilaisia yksinkertaistuksia laskenta-ajan lyhentämiseksi. Tässä diplomityössä keskityttiin tutkimaan meesauunin polttovyöhykkeen lämmönsiirron ja palamisen mallinnusta. Työssä luotiin aluksi tarvittavat massa- ja energiataseet sekä esitettiin tarvittavat lämmönsiirtoyhtälöt. Sen jälkeen kehitettiin uusi polttoaineen 1D-palamismalli. Palamismalli tehtiin VTT:n tekemien 3D-mallinnusten perusteella. Polttoaineina käytettiin maakaasua ja polttoöljyä. Uusi palamismalli lisättiin simulointiohjelmaan. Lisäksi simulointiohjelmasta muutettiin savukaasun emissiviteetin laskenta ja lämmönsiirto uunin ulkopinnasta ympäristöön. Tuloksena saatiin aikaan uusi tarkempi kuvaus lämmönsiirrosta ja palamisesta meesauunissa.

Landslide detection and monitoring capability of boat-based mobile laser scanning along Dieppe coastal cliffs, Normandy

Integrated in a wide research assessing destabilizing and triggering factors to model cliff dynamic along the Dieppe's shoreline in High Normandy, this study aims at testing boat-based mobile LiDAR capabilities by scanning 3D point clouds of the unstable coastal cliffs. Two acquisition campaigns were performed in September 2012 and September 2013, scanning (1) a 30-km-long shoreline and (2) the same test cliffs in different environmental conditions and device settings. The potentials of collected data for 3D modelling, change detection and landslide monitoring were afterward assessed. By scanning during favourable meteorological and marine conditions and close to the coast, mobile LiDAR devices are able to quickly scan a long shoreline with median point spacing up to 10cm. The acquired data are then sufficiently detailed to map geomorphological features smaller than 0.5m2. Furthermore, our capability to detect rockfalls and erosion deposits (>m3) is confirmed, since using the classical approach of computing differences between sequential acquisitions reveals many cliff collapses between Pourville and Quiberville and only sparse changes between Dieppe and Belleville-sur-Mer. These different change rates result from different rockfall susceptibilities. Finally, we also confirmed the capability of the boat-based mobile LiDAR technique to monitor single large changes, characterizing the Dieppe landslide geometry with two main active scarps, retrogression up to 40m and about 100,000m3 of eroded materials.

Characterisation of pigment particles by scanning electron microscope and image analysis programs

Coating and filler pigments have strong influence to the properties of the paper. Filler content can be even over 30 % and pigment content in coating is about 85-95 weight percent. The physical and chemical properties of the pigments are different and the knowledge of these properties is important for optimising of optical and printing properties of the paper. The size and shape of pigment particles can be measured by different analysers which can be based on sedimentation, laser diffraction, changes in electric field etc. In this master's thesis was researched particle properties especially by scanning electron microscope (SEM) and image analysis programs. Research included nine pigments with different particle size and shape. Pigments were analysed by two image analysis programs (INCA Feature and Poikki), Coulter LS230 (laser diffraction) and SediGraph 5100 (sedimentation). The results were compared to perceive the effect of particle shape to the performance of the analysers. Only image analysis programs gave parameters of the particle shape. One part of research was also the sample preparation for SEM. Individual particles should be separated and distinct in ideal sample. Analysing methods gave different results but results from image analysis programs corresponded even to sedimentation or to laser diffraction depending on the particle shape. Detailed analysis of the particle shape required high magnification in SEM, but measured parameters described very well the shape of the particles. Large particles (ecd~1 µm) could be used also in 3D-modelling which enabled the measurement of the thickness of the particles. Scanning electron microscope and image analysis programs were effective and multifunctional tools for particle analyses. Development and experience will devise the usability of analysing method in routine use.

Mittakuvatoiminnan asiakaslähtöisyyden kehittäminen

Tämän diplomityön tarkoituksena oli selvittää tämän päivän mittakuviin liittyviä asiakastarpeita Metso Automaation Virtauksensäätöratkaisut -liiketoimintalinjassa. Mittakuvat ovat tärkeä osa asiakkaalle tuotteen yhteydessä toimitettavaa dokumenttipakettia, joihin on kohdistettu yhä enemmän vaatimuksia viime vuosien aikana. Tutkimuksen keskeisenä tavoitteena oli ymmärtää 3D-mittakuvien merkitys Metson liiketoiminnassa, tunnistaa tämän päivän mittakuviin liittyvät asiakastarpeet, sekä luoda tunnistettujen asiakastarpeiden pohjalta kehittämissuunnitelma mittakuvatoiminnalle. Työssä toteutettiin teoreettinen kirjallisuusselvitys 3D-mallintamisesta sekä empiirinen tutkimusosuus asiakastarpeiden tunnistamisesta. Venttiiliyhdistelmä -mittakuviin liittyvät asiakastarpeet kerättiin haastatteluiden sekä verkkokyselyn avulla. Työssä haastateltiin Metson asiantuntijoita, Metson asiakkaita sekä CAD-järjestelmien toimittajia. Työn keskeisimpänä tuloksena esitettiin mittakuvatoiminnan kehittämissuunnitelma, jonka perustana oli mittakuviin liittyvä asiakastarvekartoitus, arvio Metson mittakuvatyökaluista sekä tulokset 3D-mittakuvien data- ja järjestelmävaatimuksista. Kehittämissuunnitelmassa kuvattiin, miten mittakuvatoimintaa tulee kehittää kokonaisvaltaisesti lähitulevaisuudessa. Tulokset antavat hyvän perustan laadukkaamman ja asiakaslähtöisemmän toiminnan kehittämiselle.

Development of Techniques for the Automatic Extraction and Grade Detection of Glioma Tumors from Conventional Brain Magnetic Resonant Images

Cerebral glioma is the most prevalent primary brain tumor, which are classified broadly into low and high grades according to the degree of malignancy. High grade gliomas are highly malignant which possess a poor prognosis, and the patients survive less than eighteen months after diagnosis. Low grade gliomas are slow growing, least malignant and has better response to therapy. To date, histological grading is used as the standard technique for diagnosis, treatment planning and survival prediction. The main objective of this thesis is to propose novel methods for automatic extraction of low and high grade glioma and other brain tissues, grade detection techniques for glioma using conventional magnetic resonance imaging (MRI) modalities and 3D modelling of glioma from segmented tumor slices in order to assess the growth rate of tumors. Two new methods are developed for extracting tumor regions, of which the second method, named as Adaptive Gray level Algebraic set Segmentation Algorithm (AGASA) can also extract white matter and grey matter from T1 FLAIR an T2 weighted images. The methods were validated with manual Ground truth images, which showed promising results. The developed methods were compared with widely used Fuzzy c-means clustering technique and the robustness of the algorithm with respect to noise is also checked for different noise levels. Image texture can provide significant information on the (ab)normality of tissue, and this thesis expands this idea to tumour texture grading and detection. Based on the thresholds of discriminant first order and gray level cooccurrence matrix based second order statistical features three feature sets were formulated and a decision system was developed for grade detection of glioma from conventional T2 weighted MRI modality.The quantitative performance analysis using ROC curve showed 99.03% accuracy for distinguishing between advanced (aggressive) and early stage (non-aggressive) malignant glioma. The developed brain texture analysis techniques can improve the physician’s ability to detect and analyse pathologies leading to a more reliable diagnosis and treatment of disease. The segmented tumors were also used for volumetric modelling of tumors which can provide an idea of the growth rate of tumor; this can be used for assessing response to therapy and patient prognosis.

Lecture 12 - Scope

Instance Variables Local variables Cool 3D Modelling! “this” keyword

Proteins and their interacting partners: an introduction to protein–ligand binding site prediction methods

Elucidating the biological and biochemical roles of proteins, and subsequently determining their interacting partners, can be difficult and time consuming using in vitro and/or in vivo methods, and consequently the majority of newly sequenced proteins will have unknown structures and functions. However, in silico methods for predicting protein–ligand binding sites and protein biochemical functions offer an alternative practical solution. The characterisation of protein–ligand binding sites is essential for investigating new functional roles, which can impact the major biological research spheres of health, food, and energy security. In this review we discuss the role in silico methods play in 3D modelling of protein–ligand binding sites, along with their role in predicting biochemical functionality. In addition, we describe in detail some of the key alternative in silico prediction approaches that are available, as well as discussing the Critical Assessment of Techniques for Protein Structure Prediction (CASP) and the Continuous Automated Model EvaluatiOn (CAMEO) projects, and their impact on developments in the field. Furthermore, we discuss the importance of protein function prediction methods for tackling 21st century problems.

Contador de repeticiones en ejercicios

[ES] Aplicación para dispositivos móviles Android que, ayudada por acelerómetros y giroscopios, da soporte al desarrollo de actividades físicas que necesiten un plan de trabajo basado en repeticiones y rutinas de ejercicios. El App ayuda a contabilizar las repeticiones de cada ejercicio, informando al usuario mediante sonido, para que este pueda mantener un ritmo continuo. El App permite la realización de ejercicios individuales hasta alcanzar un número objetivo de repeticiones o repeticiones libres; o permite la realización de una serie de ejercicios que forman parte de una rutina de ejercicios. Es posible crear rutinas de ejercicios personalizadas, eliminar rutinas o editar rutinas ya existentes (añadiendo o eliminando ejercicios y repeticiones). El reconocimiento de movimientos para la contabilización de repeticiones se realiza usando el valor absoluto del vector de aceleración generado a partir de los datos del acelerómetro del dispositivo. Este método, aunque no permite la precisión de reconocimiento de movimientos que permitiría el modelado tridimensional de la aceleración lineal del dispositivo, permite un reconocimiento menos computacionalmente costoso, ignorando ciertos factores exteriores y sin la necesidad de entrenamiento previo de la aplicación.

Servizi di posizionamento e potenzialità degli atti di aggiornamento cartografico in coordinate assolute ETRF2000

Il contesto nazionale è cambiato recentemente per l’introduzione del nuovo Sistema Geodetico coincidente con quello Europeo (ETRS89, frame ETRF00) e realizzato dalle stazioni della Rete Dinamica Nazionale. Sistema geodetico, associato al cartografico UTM_ETRF00, divenuto per decreto obbligatorio nelle Pubbliche Amministrazioni. Questo cambiamento ha consentito di ottenere rilevamenti dei dati cartografici in coordinate assolute ETRF00 molto più accurate. Quando i dati così rilevati vengono utilizzati per aggiornamenti cartografici perdono le coordinate originarie e vengono adattati a particolari cartografici circostanti. Per progettare una modernizzazione delle mappe catastali e delle carte tecniche finalizzata a consentire l’introduzione degli aggiornamenti senza modificarne le coordinate assolute originarie, lo studio è iniziato valutando come utilizzare sviluppi di strutturazione dei dati topografici presenti nel Database Geotopografico, modellizzazioni 3D di fabbricati nelle esperienze catastali INSPIRE, integrazioni in ambito MUDE tra progetti edilizi e loro realizzazioni. Lo studio è proseguito valutando i servizi di posizionamento in tempo reale NRTK presenti in Italia. Inoltre sono state effettuate sperimentazioni per verificare anche in sede locale la precisione e l’affidabilità dei servizi di posizionamento presenti. La criticità della cartografia catastale deriva sostanzialmente dal due fatti: che originariamente fu inquadrata in 850 Sistemi e successivamente fu trasformata in Roma40 con una esigua densità di punti rimisurati; che fino al 1988 fu aggiornata con modalità non rigorose di bassa qualità. Per risolvere tali criticità si è quindi ipotizzato di sfruttare le modalità di rilevamento NRTK per aumentare localmente la densità dei punti rimisurati e reinquadrare le mappe catastali. Il test, realizzato a Bologna, ha comportato un’analisi preliminare per individuare quali Punti Fiduciali considerare coerenti con le specifiche cartografiche per poi utilizzarli e aumentare localmente la densità dei punti rimisurati. La sperimentazione ha consentito la realizzazione del progetto e di inserire quindi i prossimi aggiornamenti senza modificarne le coordinate ETRF00 ottenute dal servizio di posizionamento.

La costruzione della città medievale. Archeologia dell'edilizia storica e topografia urbana a Pistoia.

Pistoia rientra a buon diritto, nel quadro della Toscana medievale, in quella rete di centri urbani di antica origine e tradizione diocesana che riuscirono a costruire, nella dialettica fra città e territorio, un organismo politico autonomo, il comune cittadino. La ricerca prende in considerazione i resti materiali delle strutture conservate nel tessuto urbano attuale, in particolare l'edilizia civile, prediligendo la cosiddetta “edilizia minore”, ovvero gli edifici residenziali non monumentali che, proprio per questo motivo, sono generalmente poco conosciuti. Le strutture, censite ed inserite in una piattaforma GIS (Arpenteur), sono analizzate con metodo archeologico al fine di distinguere le diverse fasi costruttive, medievali e post-medievali, con cui sono giunte fino ad oggi. L'analisi stratigrafica, effettuata su rilievi realizzati mediante modellazione 3D (Photomodeler), ha permesso di costruire un primo “atlante” delle tipologie murarie medievali della città: i tipi murari assumono quindi la funzione di indicatori cronologici degli edifici analizzati. I dati stratigrafici, uniti al dato topologico dei complessi architettonici (localizzati prevalentemente nel centro storico, all'interno del circuito murario della metà del XII secolo), hanno fornito informazioni sia per quanto riguarda l'aspetto materiale degli edifici di abitazione (forma, dimensioni, materiali) sia per quanto riguarda temi di topografia storica (viabilità maggiore e minore, formazione dei borghi, orizzonte sociale degli abitanti, distribuzione della proprietà), nel periodo della “parabola” della Pistoia comunale (XII-XIII secolo). In conclusione, la ricerca vuole essere sia uno strumento di analisi per la storia delle trasformazioni delle città nel periodo comunale, sia uno strumento di conoscenza e tutela di un patrimonio storico-archeologico che, per la sua natura non-monumentale spesso sfugge all'attenzione di amministratori ed urbanisti.