The queen of rice

Beth Woods has been hailed the Queen of Rice by the Australian Centre for International Agricultural Research (ACIAR). Beth’s decade-long relationship with the International Rice Research Institute driving research innovations that make large and measurable changes for rice farmers has received due recognition in a recent article published by ACIAR’s Partner’s Magazine. Her particular expertise relates to structures and strategies that help get ‘the most bang’ from the money invested in research.

Molecular Characterization of Viruses Causing the Cassava Brown Streak Disease Epidemic in Eastern Africa

Cassava brown streak disease (CBSD) was described for the first time in Tanganyika (now Tanzania) about seven decades ago. Tanganyika (now Tanzania) about seven decades ago. It was endemic in the lowland areas of East Africa and inland parts of Malawi and caused by Cassava brown streak virus (CBSV; genus Ipomovirus; Potyviridae). However, in 1990s CBSD was observed at high altitude areas in Uganda. The causes for spread to new locations were not known.The present work was thus initiated to generate information on genetic variability, clarify the taxonomy of the virus or viruses associated with CBSD in Eastern Africa as well as to understand the evolutionary forces acting on their genes. It also sought to develop a molecular based diagnostic tool for detection of CBSD-associated virus isolates. Comparison of the CP-encoding sequences of CBSD-associated virus isolates collected from Uganda and north-western Tanzania in 2007 and the partial sequences available in Genbank revealed occurrence of two genetically distinct groups of isolates. Two isolates were selected to represent the two groups. The complete genomes of isolates MLB3 (TZ:Mlb3:07) and Kor6 (TZ:Kor6:08) obtained from North-Western (Kagera) and North-Eastern (Tanga) Tanzania, respectively, were sequenced. The genomes were 9069 and 8995 nucleotides (nt), respectively. They translated into polyproteins that were predicted to yield ten mature proteins after cleavage. Nine proteins were typical in the family Potyviridae, namely P1, P3, 6K1, CI, 6K2, VPg, NIa-Pro, NIb and CP, but the viruses did not contain HC-Pro. Interestingly, genomes of both isolates contained a Maf/HAM1-like sequence (HAM1h; 678 nucleotides, 25 kDa) recombined between the NIb and CP domains in the 3’-proximal part of the genomes. HAM1h was also identified in Euphorbia ringspot virus (EuRSV) whose sequence was in GenBank. The HAM1 gene is widely spread in both prokaryotes and eukaryotes. In yeast (Saccharomyces cerevisiae) it is known to be a nucleoside triphosphate (NTP) pyrophosphatase. Novel information was obtained on the structural variation at the N-termini of polyproteins of viruses in the genus Ipomovirus. Cucumber vein yellowing virus (CVYV) and Squash vein yellowing virus (SqVYV) contain a duplicated P1 (P1a and P1b) but lack the HC-Pro. On the other hand, Sweet potato mild mottle virus (SPMMV), has a single but large P1 and has HC-Pro. Both virus isolates (TZ:Mlb3:07 & TZ:Kor6:08) characterized in this study contained a single P1 and lacked the HC-Pro which indicates unique evolution in the family Potyviridae. Comparison of 12 complete genomes of CBSD-associated viruses which included two genomes characterized in this study, revealed genetic identity of 69.0–70.3% (nt) and amino acid (aa) identities of 73.6–74.4% at polyprotein level. Comparison was also made among 68 complete CP sequences, which indicated 69.0-70.3 and 73.6-74.4 % identity at nt and aa levels, respectively. The genetic variation was large enough for dermacation of CBSD-associated virus isolates into two distinct species. The name CBSV was retained for isolates that were related to CBSV isolates available in database whereas the new virus described for the first time in this study was named Ugandan cassava brown streak virus (UCBSV) by the International Committee on Virus Taxonomy (ICTV). The isolates TZ:Mlb3:07 and TZ:Kor6:08 belong to UCBSV and CBSV, respectively. The isolates of CBSV and UCBSV were 79.3-95.5% and 86.3-99.3 % identitical at nt level, respectively, suggesting more variation amongst CBSV isolates. The main sources of variation in plant viruses are mutations and recombination. Signals for recombination events were detected in 50% of isolates of each virus. Recombination events were detected in coding and non-coding (3’-UTR) sequences except in the 5’UTR and P3. There was no evidence for recombination between isolates of CBSV and UCBSV. The non-synonomous (dN) to synonomous (dS) nucleotide substitution ratio (ω) for the HAM1h and CP domains of both viruses were ≤ 0.184 suggesting that most sites of these proteins were evolving under strong purifying selection. However, there were individual amino acid sites that were submitted to adaptive evolution. For instance, adaptive evolution was detected in the HAM1h of UCBSV (n=15) where 12 aa sites were under positive selection (P< 0.05) but not in CBSV (n=12). The CP of CBSV (n=23) contained 12 aa sites (p<0.01) while only 5 aa sites in the CP gene of UCBSV were predicted to be submitted to positive selection pressure (p<0.01). The advantages offered by the aa sites under positive selection could not be established but occurrence of such sites in the terminal ends of UCBSV-HAMIh, for example, was interpreted as a requirement for proteolysis during polyprotein processing. Two different primer pairs that simultaneously detect UCBSV and CBSV isolates were developed in this study. They were used successfully to study distribution of CBSV, UCBSV and their mixed infections in Tanzania and Uganda. It was established that the two viruses co-infect cassava and that incidences of co-infection could be as high as 50% around Lake Victoria on the Tanzanian side. Furthermore, it was revealed for the first time that both UCBSV and CBSV were widely distributed in Eastern Africa. The primer pair was also used to confirm infection in a close relative of cassava, Manihot glaziovii (Müller Arg.) with CBSV. DNA barcoding of M. glaziovii was done by sequencing the matK gene. Two out of seven M. glaziovii from the coastal areas of Korogwe and Kibaha in north eastern Tanzania were shown to be infected by CBSV but not UCBSV isolates. Detection in M. glaziovii has an implication in control and management of CBSD as it is likely to serve as virus reservoir. This study has contributed to the understanding of evolution of CBSV and UCBSV, which cause CBSD epidemic in Eastern Africa. The detection tools developed in this work will be useful in plant breeding, verification of the phytosanitary status of materials in regional and international movement of germplasm, and in all diagnostic activities related to management of CBSD. Whereas there are still many issues to be resolved such as the function and biological significance of HAM1h and its origin, this work has laid a foundation upon which the studies on these aspects can be based.

The top 100 questions of importance to the future of global agriculture

Despite a significant growth in food production over the past half-century, one of the most important challenges facing society today is how to feed an expected population of some nine billion by the middle of the 20th century. To meet the expected demand for food without significant increases in prices, it has been estimated that we need to produce 70-100 per cent more food, in light of the growing impacts of climate change, concerns over energy security, regional dietary shifts and the Millennium Development target of halving world poverty and hunger by 2015. The goal for the agricultural sector is no longer simply to maximize productivity, but to optimize across a far more complex landscape of production, rural development, environmental, social justice and food consumption outcomes. However, there remain significant challenges to developing national and international policies that support the wide emergence of more sustainable forms of land use and efficient agricultural production. The lack of information flow between scientists, practitioners and policy makers is known to exacerbate the difficulties, despite increased emphasis upon evidence-based policy. In this paper, we seek to improve dialogue and understanding between agricultural research and policy by identifying the 100 most important questions for global agriculture. These have been compiled using a horizon-scanning approach with leading experts and representatives of major agricultural organizations worldwide. The aim is to use sound scientific evidence to inform decision making and guide policy makers in the future direction of agricultural research priorities and policy support. If addressed, we anticipate that these questions will have a significant impact on global agricultural practices worldwide, while improving the synergy between agricultural policy, practice and research. This research forms part of the UK Government's Foresight Global Food and Farming Futures project.

Facilitated advocacy: supporting farmers to have a voice in policy making and the development of service provision

Listening to people, especially those who are poor, and involving them in policy making and decisions about service delivery processes are logical steps in building better services and improving policies aimed at poverty alleviation. This case describes a facilitated advocacy that helped to negotiate and support a role for poor people who farm and fish, to contribute recommendations for changes in services and policies that impact on their lives. The national Government of India’s Department of Animal Husbandry and Dairying and the Indian Council for Agricultural Research, both in the capital Delhi, have been linking with farmers and fishers and state government officials in the eastern states of Jharkhand, Orissa and West Bengal, in partnership with the STREAM Initiative of the intergovernmental Network of Aquaculture Centers in Asia Pacific and with the support of the UK Government Department for International Development, Natural resources Systems Program supporting farmers to have a voice(13 p.)

Johann Heinrich von Thünen: Leben und Werk des Namenspatrons des neuen Bundesforschungsinstituts für Ländliche Räume, Wald und Fischerei

A new concept for resource oriented federal research within the competence of the German Ministry of Food, Agriculture and Consumer Protection was implemented in 2008. The Johann Heinrich von Thünen-Institute, Federal Research Institute for Rural Areas, Forestry and Fisheries is one of 4 newly established large scale federal research institutions. It comprises the former Federal Research Centre for Fisheries, the Federal Research Centre for Forestry and Forest Products and large parts of the Federal Agricultural Research Centre. The institute is named after Johann Heinrich von Thünen, a famous national economist and social reformer of the 19th century. He developed the first serious treatment of spatial economics (the so-called Thünen rings) and the basics of the theory of the natural pay.

Value chain analysis for sea cucumber in the Philippines

This study examined the sea cucumber industry in the Philippines through the value chain lens. The intent was to identify effective pathways for the successful introduction of sandfish culture as livelihood support for coastal communities. Value chain analysis is a high-resolution analytical tool that enables industry examination at a detailed level. Previous industry assessments have provided a general picture of the sea cucumber industry in the country. The present study builds on the earlier work and supplies additional details for a better understanding of the industry's status and problems, especially their implications for the Australian Center for International Agricultural Research (ACIAR) funded sandfish project "Culture of sandfish (Holothuria scabra) in Asia- Pacific" (FIS/2003/059). (PDF contains 54 pages)

Uma abordagem por meio da teoria dos jogos de um modelo em ecologia matemática

A presente dissertação propõe uma abordagem alternativa na simulação matemática de um cenário preocupante em ecologia: o controle de pragas nocivas a uma dada lavoura de soja em uma específica região geográfica. O instrumental teórico empregado é a teoria dos jogos, de forma a acoplar ferramentas da matemática discreta à análise e solução de problemas de valor inicial em equações diferenciais, mais especificamente, as chamadas equações de dinâmica populacional de Lotka-Volterra com competição. Essas equações, que modelam o comportamento predador-presa, possuem, com os parâmetros inicialmente utilizados, um ponto de equilíbrio mais alto que o desejado no contexto agrícola sob exame, resultando na necessidade de utilização da teoria do controle ótimo. O esquema desenvolvido neste trabalho conduz a ferramentas suficientemente simples, de forma a tornar viável o seu uso em situações reais. Os dados utilizados para o tratamento do problema que conduziu a esta pesquisa interdisciplinar foram coletados de material bibliográfico da Empresa Brasileira de Pesquisa Agropecuária EMBRAPA.

Effect of planting pattern on shading and phytoplankton photosynthesis in Bangladesh rice-fish farms

In the present study, a Border Planting (BP) pattern recommended by the Bangladesh Agricultural Research Council was tested against Regular Planting (RP) to assess the effect, if any, on gross phytoplankton photosynthesis and shading. A Wide Planting (WP) pattern was also included in the trial, as an extreme case, to assess the level of photosynthesis that might be obtained if some of the rice yield was sacrificed. Three rice-planting treatments, each with four replicates, using the rice variety BR16, were undertaken: (1) RP, 26 cm between rows N to S and E to W; (2) BP, 20 cm between rows N to S and alternately 21 cm and 36 cm between rows E, to W; and (3) WP, 66 cm between rows N to S and E to W. BP showed no advantage compared to RP, possibly because the rice variety used was short and thus produced relatively little shading. WP did show a benefit for phytoplankton photosynthesis, but this may not generate an increase in fish yield sufficient to justify the negative impact of rice production.

O envolvimento da EMBRAPA e do SENAI na Cooperação Sul-Sul: da indução à busca pela retroalimentação

Por envolver número crescente de atores domésticos, a participação do Brasil na Cooperação Técnica entre Países em Desenvolvimento (CTPD) representa domínio privilegiado para se compreenderem oportunidades e desafios à institucionalização da Cooperação Sul-Sul nas relações exteriores do país. Além de contarem com competência setorial, instituições implementadoras da CTPD brasileira passaram a reunir conhecimentos sobre países com os quais o Brasil não mantinha ligações históricas estreitas e contínuas, aumentando seu potencial de influência sobre as diretrizes da política externa. Ao mesmo tempo, boa parte dessas instituições possui estrutura voltada para o desenvolvimento doméstico, conflitando com a alocação crescente de seus recursos para a promoção do desenvolvimento internacional. Por um lado, embora a busca pelo desenvolvimento nacional seja baluarte da diplomacia brasileira, os benefícios da CTPD para o mesmo aparecem de forma difusa no discurso diplomático. Por outro lado, agências implementadoras passaram a desenhar estratégias para triar ou induzir demandas, alimentando divergências com instituições decisórias e implementadoras que sustentavam visões distintas sobre o desenvolvimento e a inserção internacional do Brasil. O objetivo geral desta tese é entender os determinantes do envolvimento do Brasil na CTPD e os impactos da alocação crescente de recursos oficiais brasileiros para a promoção do desenvolvimento internacional sobre a formulação da política externa brasileira. A análise será aprofundada por meio de estudo dos casos de duas agências protagonistas na CTPD brasileira: a Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) e o Serviço Nacional de Aprendizagem Industrial (SENAI). Seu envolvimento na CTPD apresenta trajetória semelhante na medida em que induzido, inicialmente, por doadores tradicionais e, posteriormente, como maior ênfase, pela diplomacia brasileira. Durante o Governo Lula, diante do volume crescente de demandas, EMBRAPA e SENAI, identificados tradicionalmente com modelos de desenvolvimento focados no crescimento econômico e no avanço científico-tecnológico, fortaleceram suas divisões de Relações Internacionais e buscaram influenciar o processo decisório da CTPD considerando lições aprendidas em campo e elementos de seus respectivos planejamentos estratégicos. Não obstante, com a entrada do Governo Dilma e as novas prioridades do desenvolvimento e da política externa, essas instituições divergiram na avaliação da instrumentalidade da CTPD. A vertente Sul-Sul se desmobilizou no SENAI, mas continuou relevante na EMBRAPA, o que pode guardar relação com a maior competitividade do setor agrícola brasileiro e com a capacidade da EMBRAPA de mobilizar fontes alternativas de recursos humanos e financeiros para implementar ações. Porém, a polarização entre agronegócio e agricultura familiar dentro da empresa, alimentada pela sua polarização na sociedade brasileira e fora do país, comprometeu o alinhamento institucional em torno do caráter estratégico de sua atuação na CTPD.

Diversification of aquaculture for empowerment to fisheries through institution village linkage programme (IVLP) in Kerala, India

Technology Assessment and Refinement through the Institution Village Linkage Programme (IVLP) is the latest participatory extension model successfully undertaken by the Indian Council of Agricultural Research in India. The Central Marine Fisheries Research Institute has been implementing IVLP since 2001 to assess and refine the technologies of the coastal agro ecosystems at Elamkunnapuzha village (Vypeen Island) in the Ernakulam District of Kerala. A series of need based location specific technology intervention plans have been introduced to overcome the social and biological constraints on farming practices in fisheries, livestock and agriculture, and implemented with the active participation of the stakeholders. The inferences drawn from IVLP ultimately form a package suitable for enhanced production in the costal agro ecosystem for replication to other areas with similar characteristics. This paper gives a brief account of the treatment packages applied in fisheries through various technological interventions and discusses the consequent yield and benefits obtained. The ‘integrated whole village development’ through the involvement of multi institutional teams and a participatory approach was accorded prime importance in the IVLP of Elamkunnapuzha, with a greater emphasis on marginal and small farmers and specifically focusing on women for poverty alleviation and equity under the coastal agro ec

Ex-ante assessment of integrated aquaculture-agriculture adoption and impact in Southern Malawi

There are increasing requirements for impact assessment by development partners in order to increase the accountability and effectiveness of research and development projects. Impact assessment research has been dominated by conventional economic methods. This context challenges agricultural research organizations to develop and apply alternative impact assessment methods incorporating economic, social, and environmental impact components. In this study, we use the Tradeoff Analysis for Multi-Dimensional Impact Assessment (TOA-MD) model to evaluate the impact of integrated aquaculture-agriculture (IAA) adoption in Malawi. The study demonstrated that with a minimal data set, the TOA-MD model can be applied to predict and assess the adoption rates of new technologies and practices as well as their economic and non-economic impacts.

2012 Annual report

The CGIAR Research Program on Aquatic Agricultural Systems is a multi-year research initiative launched in July 2011. It is designed to pursue community-based approaches to agricultural research and development that target the poorest and most vulnerable rural households in aquatic agricultural systems. Led by WorldFish, a member of the CGIAR Consortium, the program is partnering with diverse organizations working at local, national and global levels to help achieve impacts at scale.

Genetic improvement of freshwater prawn, Macrobrachium rosenbergii (de Man) in India. Phase two: annual report for period January to December 2012

Macrobrachiurn rosenbergii is one of the widely cultured freshwater prawn species globally. India was the third largest producer of this species in 2007 and its aquaculture production rose to 43,000 metric tons (t) in 2005 froin less than 500 t in 1995. However, since then production has been declining and in 2008-09 it was 12,856 t, a reduction of more than 70% compared to 2005. There are several contributing factors to this decline, such as slow growth rate, poor survival, disease outbreaks, increase in cost of production, and availability of low risk alternative fish species. However, there is a consensus that poor seed quality leading to unsatisfactory growth and survival rates in ponds is one of the major reasons. Hence, the development of a systematic selective breeding program aimed at improving growth rate and ensuring high survival rate of this species was deemed a high priority. The Central Institute of Freshwater Aquaculture (CIFA), Bhubaneswar, India in collaboration with the WorldFish Center, Malaysia initiated a selective breeding program for this species in 2007.