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Three new species of mesophragmatica group, Drosophila amaguana, Drosophila shyri and Drosophila ruminahuii from Pasochoa Forest Reserve, northern Ecuadorian Andes, are described. The two subgroups currently composing the mesophragmatica group are renamed as the mesophragmatica subgroup to which the first two species have been added, and the viracochi subgroup to which the latter species has been added. These subgroups are defined based on the direction of the basal scutellar setae, which are divergent in the species of the former subgroup and convergent in the latter.