Um método para determinação de pontos de operação com diversidade em linha digital de assinante usando balanceamento de espectro e algoritmo evolucionário

Este trabalho apresenta um método para encontrar um conjunto de pontos de operação, os quais são ótimos de Pareto com diversidade, para linhas digitais de assinante (DSL - digital subscriber line). Em diversos trabalhos encontrados na literatura, têm sido propostos algoritmos para otimização da transmissão de dados em linhas DSL, que fornecem como resultado apenas um ponto de operação para os modems. Esses trabalhos utilizam, em geral, algoritmos de balanceamento de espectro para resolver um problema de alocação de potência, o que difere da abordagem apresentada neste trabalho. O método proposto, chamado de diverseSB , utiliza um processo híbrido composto de um algoritmo evolucionário multiobjetivo (MOEA - multi-objective evolutionary algorithm), mais precisamente, um algoritmo genético com ordenamento por não-dominância (NSGA-II - Non-Dominated Sorting Genetic Algorithm II), e usando ainda, um algoritmo de balanceamento de espectro. Os resultados obtidos por simulações mostram que, para uma dada diversidade, o custo computacional para determinar os pontos de operação com diversidade usando o algoritmo diverseSB proposto é muito menor que métodos de busca de “força bruta”. No método proposto, o NSGA-II executa chamadas ao algoritmo de balanceamento de espectro adotado, por isso, diversos testes envolvendo o mesmo número de chamadas ao algoritmo foram realizadas com o método diverseSB proposto e o método de busca por força bruta, onde os resultados obtidos pelo método diverseSB proposto foram bem superiores do que os resultados do método de busca por força bruta. Por exemplo, o método de força bruta realizando 1600 chamadas ao algoritmo de balanceamento de espectro, obtém um conjunto de pontos de operação com diversidade semelhante ao do método diverseSB proposto com 535 chamadas.

GAIA - Uma proposta de agente inteligente acoplado a algoritmos evolucionários para ajuste dinâmico de parâmetros através de conceitos de design inteligente e lógica fuzzy

Há muitos anos, técnicas de Computação Evolucionária vem sendo aplicadas com sucesso na solução dos mais variados tipos de problemas de otimização. Na constante procura pelo ótimo global e por uma melhor exploração da superfície de busca, as escolhas para ajustar estes métodos podem ser exponencialmente complexas e requerem uma grande quantidade de intervenção humana. Estes modelos tradicionais darwinianos apóiam-se fortemente em aleatoriedade e escolhas heurísticas que se mantém fixas durante toda a execução, sem que acompanhem a variabilidade dos indivíduos e as eventuais mudanças necessárias. Dadas estas questões, o trabalho introduz a combinação de aspectos da Teoria do Design Inteligente a uma abordagem hibrida de algoritmo evolucionário, através da implementação de um agente inteligente o qual, utilizando lógica fuzzy, monitora e controla dinamicamente a população e seis parâmetros definidos de uma dada execução, ajustando-os para cada situação encontrada durante a busca. Na avaliação das proposições foi construído um protótipo sobre a implementação de um algoritmo genético para o problema do caixeiro viajante simétrico aplicado ao cenário de distância por estradas entre as capitais brasileiras, o que permitiu realizar 580 testes, simulações e comparações entre diferentes configurações apresentadas e resultados de outras técnicas. A intervenção inteligente entrega resultados que, com sucesso em muitos aspectos, superam as implementações tradicionais e abrem um vasto espaço para novas pesquisas e estudos nos aqui chamados: “Algoritmos Evolucionários Híbridos Auto-Adaptáveis”, ou mesmo, “Algoritmos Evolucionários Não-Darwinianos”.

Classificação de dados utilizando algoritmos genéticos e lógica difusa

Várias das técnicas tradicionais de Mineração de Dados têm sido aplicadas com êxito e outras esbarram em limitações, tanto no desempenho como na qualidade do conhecimento gerado. Pesquisas recentes têm demonstrado que as técnicas na área de IA, tais como Algoritmo Genético (AG) e Lógica Difusa (LD), podem ser utilizadas com sucesso. Nesta pesquisa o interesse é revisar algumas abordagens que utilizam AG em combinação com LD de forma híbrida para realizar busca em espaços grandes e complexos. Este trabalho apresenta o Algoritmo Genético (AG), utilizando Lógica Difusa, para a codificação, avaliação e reprodução dos cromossomos, buscando classificar dados através de regras extraídas de maneira automática com a evolução dos cromossomos. A Lógica Difusa é utilizada para deixar as regras mais claras e próximas da linguagem humana, utilizando representações lingüísticas para identificar dados contínuos.

Estratégia de projeto de atribuição de comprimento de onda com restrição de camada física em redes WDM

O sistema WDM (Wavelength Division Multiplexing) é considerado como uma tecnologia madura para ser usada no backbone de redes ópticas. Entretanto, encontrar uma solução ótima para o algoritmo de atribuição de comprimento de onda no projeto e operação destas redes, ainda é uma questão em aberto. A pesquisa realizada nesta tese aborda os principais aspectos relacionados ao processo de atribuição de comprimento de onda em sistemas WDM, e como resultado foi proposta uma metodologia que minimiza a degradação do sinal óptico gerada pela modulação de fase cruzada (XPM – Cross-Phase Modulation). Esta proposta é composta por uma metodologia híbrida baseada em Coloração de Grafo e Algoritmo Genético (AG), sendo que o primeiro tem a função de reduzir o número de comprimentos de onda necessários para atender a matriz de tráfego (que é fornecida a priori) e o último tem a função de encontrar a ordem de ativação de canais na grade de comprimentos de onda, com o objetivo de reduzir o efeito XPM. A proposta foi comparada com o algoritmo First-Fit em diferentes cenários e topologias de redes, e demonstrou uma considerável redução na probabilidade de bloqueio.

Estratégia do planejamento e otimização de sistemas sem fio, considerando redes interferentes: abordagem baseada em cross-layer

Apesar do aumento significativo do uso de redes locais sem fio (WLAN) nos últimos anos, aspectos de projeto e planejamento de capacidade da rede são ainda sistematicamente negligenciados durante a implementação da rede. Tipicamente um projeto de rede local sem fio é feito e instalado por profissionais de rede. Esses profissionais são extremamente experientes com redes cabeadas, mas são ainda geralmente pouco experientes com redes sem fio. Deste modo, as instalações de redes locais sem fio são desvantajosas pela falta de um modelo de avaliação de desempenho e para determinar a localização do ponto de acesso (PA), além disso, fatores importantes do ambiente não são considerados no projeto. Esses fatores se tornam mais importante quando muitos pontos de acesso (PAs) são instalados para cobrir um único edifício, algumas vezes sem planejamento de freqüência. Falhas como essa podem causar interferência entre células geradas pelo mesmo PA. Por essa razão, a rede não obterá os padrões de qualidade de serviço (QoS) exigidos por cada serviço. O presente trabalho apresenta uma proposta para planejamento de redes sem fio levando em consideração a influência da interferência com o auxílio de inteligência computacional tais como a utilização de redes Bayesianas. Uma extensiva campanha de medição foi feita para avaliar o desempenho de dois pontos de acesso (PAs) sobre um cenário multiusuário, com e sem interferência. Os dados dessa campanha de medição foram usados como entrada das redes Bayesianas e confirmaram a influência da interferência nos parâmetros de QoS. Uma implementação de algoritmo genético foi utilizado permitindo uma abordagem híbrida para planejamento de redes sem fio. Como efeito de comparação para otimizar os parâmetros de QoS, de modo a encontrar a melhor distância do PA ao receptor garantindo as recomendações do International Telecomunication Union (ITU-T), a técnica de otimização por enxame de partículas foi aplicada.

Metaheuristics for a crop rotation problem

This paper presents a mathematical model adapted from literature for the crop rotation problem with demand constraints (CRP-D). The main aim of the present work is to study metaheuristics and their performance in a real context. The proposed algorithms for solution of the CRP-D are a genetic algorithm, a simulated annealing and hybrid approaches: a genetic algorithm with simulated annealing and a genetic algorithm with local search algorithm. A new constructive heuristic was also developed to provide initial solutions for the metaheuristics. Computational experiments were performed using a real planting area and semi-randomly generated instances created by varying the number, positions and dimensions of the lots. The computational results showed that these algorithms determined good feasible solutions in a short computing time as compared with the time spent to get optimal solutions, thus proving their efficacy for dealing with this practical application of the CRP-D.

Algoritmo neurogenético com vistas para o planejamento de rotas de robôs móveis autônomos

Pós-graduação em Ciência da Computação - IBILCE

Generating unconstrained two-dimensional non-guillotine cutting patterns by a Recursive Partitioning Algorithm

In this study, a dynamic programming approach to deal with the unconstrained two-dimensional non-guillotine cutting problem is presented. The method extends the recently introduced recursive partitioning approach for the manufacturer's pallet loading problem. The approach involves two phases and uses bounds based on unconstrained two-staged and non-staged guillotine cutting. The method is able to find the optimal cutting pattern of a large number of pro blem instances of moderate sizes known in the literature and a counterexample for which the approach fails to find known optimal solutions was not found. For the instances that the required computer runtime is excessive, the approach is combined with simple heuristics to reduce its running time. Detailed numerical experiments show the reliability of the method. Journal of the Operational Research Society (2012) 63, 183-200. doi: 10.1057/jors.2011.6 Published online 17 August 2011

A new evolutionary clustering search for a no-wait flow shop problem with set-up times

This paper addresses the m-machine no-wait flow shop problem where the set-up time of a job is separated from its processing time. The performance measure considered is the total flowtime. A new hybrid metaheuristic Genetic Algorithm-Cluster Search is proposed to solve the scheduling problem. The performance of the proposed method is evaluated and the results are compared with the best method reported in the literature. Experimental tests show superiority of the new method for the test problems set, regarding the solution quality. (c) 2012 Elsevier Ltd. All rights reserved.

Multi-objective evolutionary algorithm for single and multiple fault service restoration in large-scale distribution systems

Network reconfiguration for service restoration (SR) in distribution systems is a complex optimization problem. For large-scale distribution systems, it is computationally hard to find adequate SR plans in real time since the problem is combinatorial and non-linear, involving several constraints and objectives. Two Multi-Objective Evolutionary Algorithms that use Node-Depth Encoding (NDE) have proved able to efficiently generate adequate SR plans for large distribution systems: (i) one of them is the hybridization of the Non-Dominated Sorting Genetic Algorithm-II (NSGA-II) with NDE, named NSGA-N; (ii) the other is a Multi-Objective Evolutionary Algorithm based on subpopulation tables that uses NDE, named MEAN. Further challenges are faced now, i.e. the design of SR plans for larger systems as good as those for relatively smaller ones and for multiple faults as good as those for one fault (single fault). In order to tackle both challenges, this paper proposes a method that results from the combination of NSGA-N, MEAN and a new heuristic. Such a heuristic focuses on the application of NDE operators to alarming network zones according to technical constraints. The method generates similar quality SR plans in distribution systems of significantly different sizes (from 3860 to 30,880 buses). Moreover, the number of switching operations required to implement the SR plans generated by the proposed method increases in a moderate way with the number of faults.

Probabilistic approaches in civil engineering: generation of random fields and structural identification with genetic algorithms

The inherent stochastic character of most of the physical quantities involved in engineering models has led to an always increasing interest for probabilistic analysis. Many approaches to stochastic analysis have been proposed. However, it is widely acknowledged that the only universal method available to solve accurately any kind of stochastic mechanics problem is Monte Carlo Simulation. One of the key parts in the implementation of this technique is the accurate and efficient generation of samples of the random processes and fields involved in the problem at hand. In the present thesis an original method for the simulation of homogeneous, multi-dimensional, multi-variate, non-Gaussian random fields is proposed. The algorithm has proved to be very accurate in matching both the target spectrum and the marginal probability. The computational efficiency and robustness are very good too, even when dealing with strongly non-Gaussian distributions. What is more, the resulting samples posses all the relevant, welldefined and desired properties of “translation fields”, including crossing rates and distributions of extremes. The topic of the second part of the thesis lies in the field of non-destructive parametric structural identification. Its objective is to evaluate the mechanical characteristics of constituent bars in existing truss structures, using static loads and strain measurements. In the cases of missing data and of damages that interest only a small portion of the bar, Genetic Algorithm have proved to be an effective tool to solve the problem.

Lernen mit einer Hybride aus Lernendem Klassifizierendem System und Selbstorganisierender Karte

Im Forschungsgebiet der Künstlichen Intelligenz, insbesondere im Bereich des maschinellen Lernens, hat sich eine ganze Reihe von Verfahren etabliert, die von biologischen Vorbildern inspiriert sind. Die prominentesten Vertreter derartiger Verfahren sind zum einen Evolutionäre Algorithmen, zum anderen Künstliche Neuronale Netze. Die vorliegende Arbeit befasst sich mit der Entwicklung eines Systems zum maschinellen Lernen, das Charakteristika beider Paradigmen in sich vereint: Das Hybride Lernende Klassifizierende System (HCS) wird basierend auf dem reellwertig kodierten eXtended Learning Classifier System (XCS), das als Lernmechanismus einen Genetischen Algorithmus enthält, und dem Wachsenden Neuralen Gas (GNG) entwickelt. Wie das XCS evolviert auch das HCS mit Hilfe eines Genetischen Algorithmus eine Population von Klassifizierern - das sind Regeln der Form [WENN Bedingung DANN Aktion], wobei die Bedingung angibt, in welchem Bereich des Zustandsraumes eines Lernproblems ein Klassifizierer anwendbar ist. Beim XCS spezifiziert die Bedingung in der Regel einen achsenparallelen Hyperquader, was oftmals keine angemessene Unterteilung des Zustandsraumes erlaubt. Beim HCS hingegen werden die Bedingungen der Klassifizierer durch Gewichtsvektoren beschrieben, wie die Neuronen des GNG sie besitzen. Jeder Klassifizierer ist anwendbar in seiner Zelle der durch die Population des HCS induzierten Voronoizerlegung des Zustandsraumes, dieser kann also flexibler unterteilt werden als beim XCS. Die Verwendung von Gewichtsvektoren ermöglicht ferner, einen vom Neuronenadaptationsverfahren des GNG abgeleiteten Mechanismus als zweites Lernverfahren neben dem Genetischen Algorithmus einzusetzen. Während das Lernen beim XCS rein evolutionär erfolgt, also nur durch Erzeugen neuer Klassifizierer, ermöglicht dies dem HCS, bereits vorhandene Klassifizierer anzupassen und zu verbessern. Zur Evaluation des HCS werden mit diesem verschiedene Lern-Experimente durchgeführt. Die Leistungsfähigkeit des Ansatzes wird in einer Reihe von Lernproblemen aus den Bereichen der Klassifikation, der Funktionsapproximation und des Lernens von Aktionen in einer interaktiven Lernumgebung unter Beweis gestellt.

Space trajectories optimization using variable-chromosome-length genetic algorithms

The problem of optimal design of a multi-gravity-assist space trajectories, with free number of deep space maneuvers (MGADSM) poses multi-modal cost functions. In the general form of the problem, the number of design variables is solution dependent. To handle global optimization problems where the number of design variables varies from one solution to another, two novel genetic-based techniques are introduced: hidden genes genetic algorithm (HGGA) and dynamic-size multiple population genetic algorithm (DSMPGA). In HGGA, a fixed length for the design variables is assigned for all solutions. Independent variables of each solution are divided into effective and ineffective (hidden) genes. Hidden genes are excluded in cost function evaluations. Full-length solutions undergo standard genetic operations. In DSMPGA, sub-populations of fixed size design spaces are randomly initialized. Standard genetic operations are carried out for a stage of generations. A new population is then created by reproduction from all members based on their relative fitness. The resulting sub-populations have different sizes from their initial sizes. The process repeats, leading to increasing the size of sub-populations of more fit solutions. Both techniques are applied to several MGADSM problems. They have the capability to determine the number of swing-bys, the planets to swing by, launch and arrival dates, and the number of deep space maneuvers as well as their locations, magnitudes, and directions in an optimal sense. The results show that solutions obtained using the developed tools match known solutions for complex case studies. The HGGA is also used to obtain the asteroids sequence and the mission structure in the global trajectory optimization competition (GTOC) problem. As an application of GA optimization to Earth orbits, the problem of visiting a set of ground sites within a constrained time frame is solved. The J2 perturbation and zonal coverage are considered to design repeated Sun-synchronous orbits. Finally, a new set of orbits, the repeated shadow track orbits (RSTO), is introduced. The orbit parameters are optimized such that the shadow of a spacecraft on the Earth visits the same locations periodically every desired number of days.

Modeling Techniques for the High-Resolution Interpretation of Cryo-Electron Microscopy Reconstructions

Essential biological processes are governed by organized, dynamic interactions between multiple biomolecular systems. Complexes are thus formed to enable the biological function and get dissembled as the process is completed. Examples of such processes include the translation of the messenger RNA into protein by the ribosome, the folding of proteins by chaperonins or the entry of viruses in host cells. Understanding these fundamental processes by characterizing the molecular mechanisms that enable then, would allow the (better) design of therapies and drugs. Such molecular mechanisms may be revealed trough the structural elucidation of the biomolecular assemblies at the core of these processes. Various experimental techniques may be applied to investigate the molecular architecture of biomolecular assemblies. High-resolution techniques, such as X-ray crystallography, may solve the atomic structure of the system, but are typically constrained to biomolecules of reduced flexibility and dimensions. In particular, X-ray crystallography requires the sample to form a three dimensional (3D) crystal lattice which is technically di‑cult, if not impossible, to obtain, especially for large, dynamic systems. Often these techniques solve the structure of the different constituent components within the assembly, but encounter difficulties when investigating the entire system. On the other hand, imaging techniques, such as cryo-electron microscopy (cryo-EM), are able to depict large systems in near-native environment, without requiring the formation of crystals. The structures solved by cryo-EM cover a wide range of resolutions, from very low level of detail where only the overall shape of the system is visible, to high-resolution that approach, but not yet reach, atomic level of detail. In this dissertation, several modeling methods are introduced to either integrate cryo-EM datasets with structural data from X-ray crystallography, or to directly interpret the cryo-EM reconstruction. Such computational techniques were developed with the goal of creating an atomic model for the cryo-EM data. The low-resolution reconstructions lack the level of detail to permit a direct atomic interpretation, i.e. one cannot reliably locate the atoms or amino-acid residues within the structure obtained by cryo-EM. Thereby one needs to consider additional information, for example, structural data from other sources such as X-ray crystallography, in order to enable such a high-resolution interpretation. Modeling techniques are thus developed to integrate the structural data from the different biophysical sources, examples including the work described in the manuscript I and II of this dissertation. At intermediate and high-resolution, cryo-EM reconstructions depict consistent 3D folds such as tubular features which in general correspond to alpha-helices. Such features can be annotated and later on used to build the atomic model of the system, see manuscript III as alternative. Three manuscripts are presented as part of the PhD dissertation, each introducing a computational technique that facilitates the interpretation of cryo-EM reconstructions. The first manuscript is an application paper that describes a heuristics to generate the atomic model for the protein envelope of the Rift Valley fever virus. The second manuscript introduces the evolutionary tabu search strategies to enable the integration of multiple component atomic structures with the cryo-EM map of their assembly. Finally, the third manuscript develops further the latter technique and apply it to annotate consistent 3D patterns in intermediate-resolution cryo-EM reconstructions. The first manuscript, titled An assembly model for Rift Valley fever virus, was submitted for publication in the Journal of Molecular Biology. The cryo-EM structure of the Rift Valley fever virus was previously solved at 27Å-resolution by Dr. Freiberg and collaborators. Such reconstruction shows the overall shape of the virus envelope, yet the reduced level of detail prevents the direct atomic interpretation. High-resolution structures are not yet available for the entire virus nor for the two different component glycoproteins that form its envelope. However, homology models may be generated for these glycoproteins based on similar structures that are available at atomic resolutions. The manuscript presents the steps required to identify an atomic model of the entire virus envelope, based on the low-resolution cryo-EM map of the envelope and the homology models of the two glycoproteins. Starting with the results of the exhaustive search to place the two glycoproteins, the model is built iterative by running multiple multi-body refinements to hierarchically generate models for the different regions of the envelope. The generated atomic model is supported by prior knowledge regarding virus biology and contains valuable information about the molecular architecture of the system. It provides the basis for further investigations seeking to reveal different processes in which the virus is involved such as assembly or fusion. The second manuscript was recently published in the of Journal of Structural Biology (doi:10.1016/j.jsb.2009.12.028) under the title Evolutionary tabu search strategies for the simultaneous registration of multiple atomic structures in cryo-EM reconstructions. This manuscript introduces the evolutionary tabu search strategies applied to enable a multi-body registration. This technique is a hybrid approach that combines a genetic algorithm with a tabu search strategy to promote the proper exploration of the high-dimensional search space. Similar to the Rift Valley fever virus, it is common that the structure of a large multi-component assembly is available at low-resolution from cryo-EM, while high-resolution structures are solved for the different components but lack for the entire system. Evolutionary tabu search strategies enable the building of an atomic model for the entire system by considering simultaneously the different components. Such registration indirectly introduces spatial constrains as all components need to be placed within the assembly, enabling the proper docked in the low-resolution map of the entire assembly. Along with the method description, the manuscript covers the validation, presenting the benefit of the technique in both synthetic and experimental test cases. Such approach successfully docked multiple components up to resolutions of 40Å. The third manuscript is entitled Evolutionary Bidirectional Expansion for the Annotation of Alpha Helices in Electron Cryo-Microscopy Reconstructions and was submitted for publication in the Journal of Structural Biology. The modeling approach described in this manuscript applies the evolutionary tabu search strategies in combination with the bidirectional expansion to annotate secondary structure elements in intermediate resolution cryo-EM reconstructions. In particular, secondary structure elements such as alpha helices show consistent patterns in cryo-EM data, and are visible as rod-like patterns of high density. The evolutionary tabu search strategy is applied to identify the placement of the different alpha helices, while the bidirectional expansion characterizes their length and curvature. The manuscript presents the validation of the approach at resolutions ranging between 6 and 14Å, a level of detail where alpha helices are visible. Up to resolution of 12 Å, the method measures sensitivities between 70-100% as estimated in experimental test cases, i.e. 70-100% of the alpha-helices were correctly predicted in an automatic manner in the experimental data. The three manuscripts presented in this PhD dissertation cover different computation methods for the integration and interpretation of cryo-EM reconstructions. The methods were developed in the molecular modeling software Sculptor (http://sculptor.biomachina.org) and are available for the scientific community interested in the multi-resolution modeling of cryo-EM data. The work spans a wide range of resolution covering multi-body refinement and registration at low-resolution along with annotation of consistent patterns at high-resolution. Such methods are essential for the modeling of cryo-EM data, and may be applied in other fields where similar spatial problems are encountered, such as medical imaging.

Modeling, simulation and application of bacterial transduction in genetic algorithms

At present, all methods in Evolutionary Computation are bioinspired by the fundamental principles of neo-Darwinism, as well as by a vertical gene transfer. Virus transduction is one of the key mechanisms of horizontal gene propagation in microorganisms (e.g. bacteria). In the present paper, we model and simulate a transduction operator, exploring the possible role and usefulness of transduction in a genetic algorithm. The genetic algorithm including transduction has been named PETRI (abbreviation of Promoting Evolution Through Reiterated Infection). Our results showed how PETRI approaches higher fitness values as transduction probability comes close to 100%. The conclusion is that transduction improves the performance of a genetic algorithm, assuming a population divided among several sub-populations or ?bacterial colonies?.