Impacts des réarrangements génomiques chloroplastiques sur l'apparition des phénotypes de variégation chez Arabidopsis thaliana

Contrairement à la plupart des eucaryotes non-photosynthétiques, les végétaux doivent assurer la stabilité d’un génome additionnel contenu dans le plastide, un organite d’origine endosymbiotique. Malgré la taille modeste de ce génome et le faible nombre de gènes qu’il encode, celui-ci est absolument essentiel au processus de photosynthèse. Pourtant, même si ce génome est d’une importance cruciale pour le développement de la plante, les principales menaces à son intégrité, ainsi que les conséquences d’une déstabilisation généralisée de sa séquence d’ADN, demeurent largement inconnues. Dans l’objectif d’élucider les conséquences de l’instabilité génomique chloroplastique, nous avons utilisé le mutant why1why3polIb d’Arabidopsis thaliana, qui présente d’importants niveaux de réarrangements génomiques chloroplastiques, ainsi que la ciprofloxacine, un composé induisant des brisures double-brins dans l’ADN des organites. Ceci nous a permis d’établir qu’une quantité importante de réarrangements génomiques provoque une déstabilisation de la chaîne de transport des électrons photosynthétique et un grave stress oxydatif associé au processus de photosynthèse. Étonnamment, chez why1why3polIb, ces hautes concentrations d’espèces oxygénées réactives ne mènent ni à la perte de fonction des chloroplastes affectés, ni à la mort cellulaire des tissus. Bien au contraire, ce déséquilibre rédox semble être à l’origine d’une reprogrammation génique nucléaire permettant de faire face à ce stress photosynthétique et conférant une tolérance aux stress oxydatifs subséquents. Grâce à une nouvelle méthode d’analyse des données de séquençage de nouvelle génération, nous montrons également qu’un type particulier d’instabilité génomique, demeuré peu caractérisé jusqu’à maintenant, constitue une des principales menaces au maintien de l’intégrité génomique des organites, et ce, tant chez Arabidopsis que chez l’humain. Ce type d’instabilité génomique est dénommé réarrangement de type U-turn et est vraisemblablement associé au processus de réplication. Par une approche génétique, nous démontrons que les protéines chloroplastiques WHY1, WHY3 et RECA1 empêchent la formation de ce type d’instabilité génomique, probablement en favorisant la stabilisation et le redémarrage des fourches de réplication bloquées. Une forte accumulation de réarrangements de type U-turn semble d’ailleurs être à l’origine d’un sévère trouble développemental chez le mutant why1why3reca1. Ceci soulève de nombreuses questions quant à l’implication de ce type d’instabilité génomique dans de nombreux troubles et pathologies possédant une composante mitochondriale.

Le maintien de la stabilité génomique du plastide : un petit génome d’une grande importance

Chez les plantes, le génome plastidique est continuellement exposé à divers stress mutagènes, tels l’oxydation des bases et le blocage des fourches de réplication. Étonnamment, malgré ces menaces, le génome du plastide est reconnu pour être très stable, sa stabilité dépassant même celle du génome nucléaire. Néanmoins, les mécanismes de réparation de l’ADN et du maintien de la stabilité du génome plastidique sont encore peu connus. Afin de mieux comprendre ces processus, nous avons développé une approche, basée sur l’emploi de la ciprofloxacine, qui nous permet d’induire des bris d’ADN double-brins (DSBs) spécifiquement dans le génome des organelles. En criblant, à l’aide de ce composé, une collection de mutants d’Arabidopsis thaliana déficients pour des protéines du nucléoïde du plastide, nous avons identifié 16 gènes vraisemblablement impliqués dans le maintien de la stabilité génomique de cette organelle. Parmi ces gènes, ceux de la famille Whirly jouent un rôle primordial dans la protection du génome plastidique face aux réarrangements dépendants de séquences de microhomologie. Deux autres familles de gènes codant pour des protéines plastidiques, soit celle des polymérases de types-I et celle des recombinases, semblent davantage impliquées dans les mécanismes conservateurs de réparation des DSBs. Les relations épistatiques entre ces gènes et ceux des Whirly ont permis de définir les bases moléculaires des mécanismes de la réparation dépendante de microhomologies (MHMR) dans le plastide. Nous proposons également que ce type de mécanismes servirait en quelque sorte de roue de secours pour les mécanismes conservateurs de réparation. Finalement, un criblage non-biaisé, utilisant une collection de plus de 50,000 lignées mutantes d’Arabidopsis, a été réalisé. Ce criblage a permis d’établir un lien entre la stabilité génomique et le métabolisme des espèces réactives oxygénées (ROS). En effet, la plupart des gènes identifiés lors de ce criblage sont impliqués dans la photosynthèse et la détoxification des ROS. Globalement, notre étude a permis d’élargir notre compréhension des mécanismes du maintien de la stabilité génomique dans le plastide et de mieux comprendre l’importance de ces processus.

Studies on Catalysis by Vanadia Supported On Metal Oxides

Catalysis is an essential technology in manufacturing industries. The investigation based on supported vanadia catalysts and it’s sulfated analogues. Vanadia is a transition metal oxide and is used in oxidation reactions in chemical industry. It is more active and selective catalysts on suitable supports. The work deals with preparation of vanadia incorporated tin oxide and zirconia systems by wet impregnation. Physico-chemical characterization using instrumental techniques like BET etc. The surface acidic properties were determined by the ammonia TPD studies, Perylene absorption studies and Cumene conversion reaction. The catalytic activities of the prepared systems are tested by Friedel-Crafts benzylation of arenes and Bechmann rearrangement of Cyclohexanol oxime. Here the rector reactions are relatively rare. So to test the application of the catalyst systems for the selective oxidation of cyclohexanol to cyclohexanone and finally evaluate the catalytic activity of the systems for the vapour phase oxidative dehydrogenation of Ethylbenzene, which leads to the formation of Industrially important compound ‘styrene’ is another objective of this work

Dehydration of aldoximes on rare earth exchanged (La3+, Ce3+, RE3+, Sm3+) Na–Y zeolites: A facile route for the synthesis of nitriles

Rare earth exchanged Na–Y zeolites, H-mordenite, K-10 montmorillonite clay and amorphous silica-alumina were effectively employed for the continuous synthesis of nitriles. Dehydration of benzaldoxime and 4-methoxybenzaldoxime were carried out on these catalysts at 473 K. Benzonitrile (dehydration product) was obtained in near quantitative yield with benzaldoxime whereas; 4-methoxybenzaldoxime produces both Beckmann rearrangement (4-methoxyphenylformamide) as well as dehydration products (4-methoxy benzonitrile) in quantitative yields. The production of benzonitrile was near quantitative under heterogeneous reaction conditions. The optimal protocol allows nitriles to be synthesized in good yields through the dehydration of aldoximes. Time on stream (TOS) studies show decline in the activity of the catalysts due to neutralization of acid sites by the basic reactant and product molecules and water formed during the dehydration of aldoximes.

“Catalysis by Nanocrystalline Ceria Modified with Transition Metals”

The objective of the present work is to improve the textural and structural properties of cerium oxide by the incorporation of transition metals as well as sulphate ions. We have incorporated tungsten, molybdenum and chromium oxide into pure as well as sulphated cerium oxide and the catalytic systems thus prepared were characterised using various techniques. lndustrially important reactions such as acetalization and deacetalization, oxidative dehydrogenation of ethylbenzene, MTBE synthesis and Beckmann rearrangement of cinnamaldoxime and salicylaldoxime have been selected for the measurement of the catalytic activity of the systems. The work is presented in eight chapters

‘‘catalysis by nano sulfated titania modified by transition metals"

in the present study, we have prepared and evaluated the physical and chemical properties and catalytic activities of transition metal loaded sulfated titania via the sol-gel route. Sol-gel method is widely used for preparing porous materials having controlled properties and leads to the formation of oxide particles in nano range, which are spherical or interconnected to each other. Characterization using various physico-chemical techniques and a detailed study of acidic properties are also carried out. Some reactions of industrial importance such as Friedel-Crafts reaction, fen-butylation of phenol,Beckmann rearrangement of cyclohexanone oxime, nitration of phenol and photochemical degradation of methylene blue have been selected for catalytic activity study in the present venture. The work is organized into eight chapters

Polimorfismos del gen Butirilcolinesterasa responsables de reacciones adversas en pacientes consumidores de “cocaína”

La butirilcolinesterasa humana (BChE; EC 3.1.1.8) es una enzima polimórfica sintetizada en el hígado y en el tejido adiposo, ampliamente distribuida en el organismo y encargada de hidrolizar algunos ésteres de colina como la procaína, ésteres alifáticos como el ácido acetilsalicílico, fármacos como la metilprednisolona, el mivacurium y la succinilcolina y drogas de uso y/o abuso como la heroína y la cocaína. Es codificada por el gen BCHE (OMIM 177400), habiéndose identificado más de 100 variantes, algunas no estudiadas plenamente, además de la forma más frecuente, llamada usual o silvestre. Diferentes polimorfismos del gen BCHE se han relacionado con la síntesis de enzimas con niveles variados de actividad catalítica. Las bases moleculares de algunas de esas variantes genéticas han sido reportadas, entre las que se encuentra las variantes Atípica (A), fluoruro-resistente del tipo 1 y 2 (F-1 y F-2), silente (S), Kalow (K), James (J) y Hammersmith (H). En este estudio, en un grupo de pacientes se aplicó el instrumento validado Lifetime Severity Index for Cocaine Use Disorder (LSI-C) para evaluar la gravedad del consumo de “cocaína” a lo largo de la vida. Además, se determinaron Polimorfismos de Nucleótido Simple (SNPs) en el gen BCHE conocidos como responsables de reacciones adversas en pacientes consumidores de “cocaína” mediante secuenciación del gen y se predijo el efecto delos SNPs sobre la función y la estructura de la proteína, mediante el uso de herramientas bio-informáticas. El instrumento LSI-C ofreció resultados en cuatro dimensiones: consumo a lo largo de la vida, consumo reciente, dependencia psicológica e intento de abandono del consumo. Los estudios de análisis molecular permitieron observar dos SNPs codificantes (cSNPs) no sinónimos en el 27.3% de la muestra, c.293A>G (p.Asp98Gly) y c.1699G>A (p.Ala567Thr), localizados en los exones 2 y 4, que corresponden, desde el punto de vista funcional, a la variante Atípica (A) [dbSNP: rs1799807] y a la variante Kalow (K) [dbSNP: rs1803274] de la enzima BChE, respectivamente. Los estudios de predicción In silico establecieron para el SNP p.Asp98Gly un carácter patogénico, mientras que para el SNP p.Ala567Thr, mostraron un comportamiento neutro. El análisis de los resultados permite proponer la existencia de una relación entre polimorfismos o variantes genéticas responsables de una baja actividad catalítica y/o baja concentración plasmática de la enzima BChE y algunas de las reacciones adversas ocurridas en pacientes consumidores de cocaína.

Similarities in butterfly emergence dates among populations suggest local adaptation to climate

Phenology shifts are the most widely cited examples of the biological impact of climate change, yet there are few assessments of potential effects on the fitness of individual organisms or the persistence of populations. Despite extensive evidence of climate-driven advances in phenological events over recent decades, comparable patterns across species' geographic ranges have seldom been described. Even fewer studies have quantified concurrent spatial gradients and temporal trends between phenology and climate. Here we analyse a large data set (~129 000 phenology measures) over 37 years across the UK to provide the first phylogenetic comparative analysis of the relative roles of plasticity and local adaptation in generating spatial and temporal patterns in butterfly mean flight dates. Although populations of all species exhibit a plastic response to temperature, with adult emergence dates earlier in warmer years by an average of 6.4 days per °C, among-population differences are significantly lower on average, at 4.3 days per °C. Emergence dates of most species are more synchronised over their geographic range than is predicted by their relationship between mean flight date and temperature over time, suggesting local adaptation. Biological traits of species only weakly explained the variation in differences between space-temperature and time-temperature phenological responses, suggesting that multiple mechanisms may operate to maintain local adaptation. As niche models assume constant relationships between occurrence and environmental conditions across a species' entire range, an important implication of the temperature-mediated local adaptation detected here is that populations of insects are much more sensitive to future climate changes than current projections suggest.

Bovine Biofertilizer and Water Regime Effects on Growth and Bulb Quality of Garlic

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Condutividade elétrica da solução nutritiva para o cultivo do crisântemo em vaso

Em se tratando do crisântemo de vaso, que constitui relevante contribuição à atividade de plantas ornamentais, ainda há necessidade de uma recomendação consistente sobre a condutividade elétrica (CE) da solução nutritiva para seu cultivo. Nesse sentido, realizou-se um experimento em ambiente protegido, objetivando avaliar o crescimento do crisântemo cv. Miramar cultivado em vaso, em função da CE da solução nutritiva e da lixiviação de sais do substrato. O delineamento experimental foi em blocos casualizados, com quatro repetições; os tratamentos foram distribuídos em esquema fatorial 5 x 2, referentes aos valores de CE da solução nutritiva (2,1; 2,8; 3,5; 4,2; e 4,9 dS m-1), em substrato com e sem lavagem para lixiviação dos sais. O aumento da CE inibiu o crescimento e desempenho vegetativo, mas estimulou o diâmetro da haste. A lixiviação dos sais estimulou, exceto quanto ao diâmetro da haste, o maior crescimento avaliado pelas demais variáveis fitotécnicas. A CE de 2,1 dS m-1 possibilita a produção de crisântemo dentro de padrões qualitativos de comercialização, mediante lixiviação periódica do substrato.

Radiação solar em ambiente protegido cultivado com tomateiro nas estações verão-outono do Rio Grande do Sul

O crescimento e desenvolvimento de uma planta dependem da intensidade, qualidade e duração da radiação solar. Por esse fator ser de importância vital às plantas, o presente trabalho objetivou fazer uma avaliação sobre sua variação, bem como sobre a sua disponibilidade no interior do ambiente protegido durante o ciclo do tomateiro nas estações verão-outono em Pelotas, Rio Grande do Sul. O experimento foi conduzido de janeiro a junho de 2003 no Campus da Universidade Federal de Pelotas (latitude 31°52'S; longitude 52°21'W e altitude de 13m), em estufa plástica disposta no sentido Leste-Oeste, com área de 180m². A cultivar utilizada foi Flora-dade, semeada em 24/01/03, transplantada no dia 28/02/03, sendo a última colheita em 12/06/03. Avaliou-se a radiação solar global externa (Rgext) e interna (Rgint), transmitância, radiação fotossinteticamente ativa (RFA) e o albedo da cultura a partir de sensores eletrônicos conectados a um datalloger. Durante o ciclo da cultura, o total de Rgext foi 1161,21MJ m-2, enquanto a Rgint foi 881,85MJ m-2. A Rgint e a RFA apresentaram valores médios diários de 8,5MJ m-2 dia-1 e 3,4MJ m-2 dia-1, respectivamente. A transmitância média da cobertura plástica à radiação solar global foi de 76%. O albedo médio diário da cultura foi 0,23, com albedo de 0,17 nos estádios iniciais, 0,26 no período de máximo crescimento e 0,23 no final do ciclo.

Produtividade e qualidade de frutos do mamoeiro em função de tipos e doses de biofertilizantes

Biofertilizers are organic products usually obtained from an anaerobic process, evaluated mainly as phytoprotectors for agriculture, although they can improve fruit production. By this way, a field experiment was carried out in Remigio County, Paraiba State, Brazil, to evaluate the effects of two bovine biofertilizers on yield, medium mass and quality of papaya fruits (Carica papaya L.), 'Baixinho de Santa Amalia cultivar. Treatments were distributed in a randomized complete blocks design with three replications and 15 plants in each parcel, in a 2 x 5 factorial arrangement, with two biofertilizers: simple (water and fresh bovine manure) and supermagro (water, fresh bovine manure, macro and micronutrients and a protein mix), applied in soil under liquid form at five volumes, as follows: 0.0; 0.5; 1.0; 1.5; e 2.0 L cave(-1). There was no statistical difference between biofertilizers for fruit mass, yield and external and internal fruit quality variables, while between volumes differences were registered for both biofertilizers. The results, except for fruit firmness, registered positive effects of the biofertilizers on 'Baixinho de Santa Amalia' papaya cultivar in relation to yield and physical and chemical fruit quality.

Growth of Chrysanthemum x grandiflorum in Different Peats and Change of Peat Properties during Cultivation

Marketable chrysanthemums were produced in several different peat types. Only the plants in one of the dredged frozen black peats and one of the milled white peats had a significant lower shoot dry weight than those in one of the sod and milled white peats, respectively. As the N-contents of the fertilized peats show neither deficiency nor excess in nutrient supply, possibly they are not the reason for the differences in shoot dry weight. The air capacity, which is extremely low in both dredged frozen black peats and dropped further during the cultivation period due to decomposition, also cannot explain the differences in shoot dry weight sufficiently (R-2=0.44*; n=12). A close linear negative correlation (R-2=0.77**; n=12) was found between the CAT (VDLUFA) soluble Fe and the shoot dry weight. Therefore, the Fe-contents might be a quality factor of peat to be used as a growing medium.

Preliminary selection of acerola genotypes in Brazil

Introduction. Breeding studies for acerola (Malpighia glabra) improvement aim at obtaining plants that produce fruits with uniform chemical and physical attributes, including high levels of vitamin C, which can provision the market with fresh fruit and frozen pulp. High variability in fruit quality is observed in Brazilian acerola crops, especially those propagated by seeds. In this context, the objective of our research was to evaluate the physical and chemical characteristics of Brazilian acerola genotype fruits. Materials and methods. Sixteen acerola genotypes were studied in Jaboticabal, São Paulo State, Brazil. A completely randomized design with sixteen treatments and six replications was adopted. Each treatment was represented by one genotype. Several parameters related to fruit quality, such as width, length, weight, pulp percentage, soluble solids (SS), titratable acidity (TA), [SS / TA] ratio and vitamin C content, were evaluated in fruits of the acerola genotypes. The results were submitted to variance analyses, the Tukey test and cluster analysis. Results and discussion. There was a statistical difference between the acerola genotypes studied. Three of them stood out as natural sources of vitamin C. In spite of fruit size, two acerola genotypes were found to have potential for fresh fruit production. In a general form, genotypes that presented a high [SS / TA] ratio had low vitamin C content. Conclusion. The acerola genotypes studied in Jaboticabal presented high variability, forming eleven groups in relation to fruit quality parameters. © 2007 Cirad/EDP Sciences All rights reserved.