Nested liana-tree network in three distinct neotropical vegetation formations

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Crystallization, preliminary X-ray analysis and Patterson search of a new aspartic protease isolated from human urine

Aspartic protease (EC 3.4.23) make up a widely distributed class of enzymes in animals, plants, microbes and, viruses. In animals these enzymes perform diverse functions, which range from digestion of food proteins to very specific regulatory roles. In contrast the information about the well-characterized aspartic proteases, very little is known about the corresponding enzyme in urine. A new aspartic protease isolated from human urine has been crystallized and X-ray diffraction data collected to 2.45 Angstrom resolution using a synchrotron radiation source. Crystals belong to the space group P2(1)2(1)2(1) the cell parameters obtained were a=50.99, b=75.56 and c=89.90 Angstrom. Preliminary analysis revealed the presence of one molecule in the asymmetric unit. The structure was determined using the molecular replacement technique and is currently being refined using simulated annealing and conjugate gradient protocols.

Crystal structure of hemoglobin from the maned wolf (Chrysocyon brachyurus) using synchrotron radiation

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Vortex lattice of a long superconducting wire with a columnar defect

In the present work we study a long superconducting wire with a columnar defect in the presence of an applied magnetic field. The cross section of the cylinder is assumed to be circular. The field is taken uniform and parallel to the cylinder axis. We use the London theory to investigate the vortex lattice inside the wire. Although this theory is valid in the limit of low vortex density, that is, when the nearest neighbor vortex distance is much larger than the coherence length, we can obtain a reasonable qualitative description of lattice properties. We calculate: (1) the vortex lattice structure using the simulated annealing technique; (2) the magnetization curve as a function of the applied field.

Vortex lattice and matching fields for a long superconducting wire

We investigate the flux penetration patterns and matching fields of a long cylindrical wire of circular cross section in the presence of an external magnetic field. For this study we write the London theory for a long cylinder both for the mixed and Meissner states, with boundary conditions appropriate for this geometry. Using the Monte Carlo simulated annealing method, the free energy of the mixed state is minimized with respect to the vortex position and we obtain the ground state of the vortex lattice for N=3 up to 18 vortices. The free energy of the Meissner and mixed states provides expressions for the matching fields. We find that, as in the case of samples of different geometry, the finite-size effect provokes a delay on the vortex penetration and a vortex accumulation in the center of the sample. The vortex patterns obtained are in good agreement with experimental results.

Size effects in the magnetization of a superconducting wire

The size effects in the magnetization of a long cylindrical wire of circular cross section in the presence of an external magnetic field are investigated. For this study the London theory is used with boundary conditions appropriate for this geometry. Using the Monte Carlo simulated annealing method, the free energy of the mixed state is minimized with respect to the vortex positions. The ground state of the vortex lattice for n = 1 up to 18 vortices for a given radius of the cylinder is obtained. It is found that the finite size of the sample provokes a matching effect in the magnetization, as found in experiments with superconducting samples of finite size but different geometry. © 1999 American Institute of Physics.

Building roof contour extraction from LiDAR data

This paper proposes a method for the automatic extraction of building roof contours from a LiDAR-derived digital surface model (DSM). The method is based on two steps. First, to detect aboveground objects (buildings, trees, etc.), the DSM is segmented through a recursive splitting technique followed by a region merging process. Vectorization and polygonization are used to obtain polyline representations of the detected aboveground objects. Second, building roof contours are identified from among the aboveground objects by optimizing a Markov-random-field-based energy function that embodies roof contour attributes and spatial constraints. Preliminary results have shown that the proposed methodology works properly.

Métodos de otimização global aplicados na busca dos parâmetros SRC

O método de empilhamento por Superfície de Reflexão Comum (SRC) produz seções simuladas de afastamento nulo (AN) por meio do somatório de eventos sísmicos dos dados de cobertura múltipla contidos nas superfícies de empilhamento. Este método não depende do modelo de velocidade do meio, apenas requer o conhecimento a priori da velocidade próxima a superfície. A simulação de seções AN por este método de empilhamento utiliza uma aproximação hiperbólica de segunda ordem do tempo de trânsito de raios paraxiais para definir a superfície de empilhamento ou operador de empilhamento SRC. Para meios 2D este operador depende de três atributos cinemáticos de duas ondas hipotéticas (ondas PIN e N), observados no ponto de emergência do raio central com incidência normal, que são: o ângulo de emergência do raio central com fonte-receptor nulo (β₀) , o raio de curvatura da onda ponto de incidência normal (R_PIN) e o raio de curvatura da onda normal (R_N). Portanto, o problema de otimização no método SRC consiste na determinação, a partir dos dados sísmicos, dos três parâmetros (β₀, R_PIN, R_N) ótimos associados a cada ponto de amostragem da seção AN a ser simulada. A determinação simultânea destes parâmetros pode ser realizada por meio de processos de busca global (ou otimização global) multidimensional, utilizando como função objetivo algum critério de coerência. O problema de otimização no método SRC é muito importante para o bom desempenho no que diz respeito a qualidade dos resultados e principalmente ao custo computacional, comparado com os métodos tradicionalmente utilizados na indústria sísmica. Existem várias estratégias de busca para determinar estes parâmetros baseados em buscas sistemáticas e usando algoritmos de otimização, podendo estimar apenas um parâmetro de cada vez, ou dois ou os três parâmetros simultaneamente. Levando em conta a estratégia de busca por meio da aplicação de otimização global, estes três parâmetros podem ser estimados através de dois procedimentos: no primeiro caso os três parâmetros podem ser estimados simultaneamente e no segundo caso inicialmente podem ser determinados simultaneamente dois parâmetros (β₀, R_PIN) e posteriormente o terceiro parâmetro (R_N) usando os valores dos dois parâmetros já conhecidos. Neste trabalho apresenta-se a aplicação e comparação de quatro algoritmos de otimização global para encontrar os parâmetros SRC ótimos, estes são: Simulated Annealing (SA), Very Fast Simulated Annealing (VFSA), Differential Evolution (DE) e Controlled Rando Search - 2 (CRS2). Como resultados importantes são apresentados a aplicação de cada método de otimização e a comparação entre os métodos quanto a eficácia, eficiência e confiabilidade para determinar os melhores parâmetros SRC. Posteriormente, aplicando as estratégias de busca global para a determinação destes parâmetros, por meio do método de otimização VFSA que teve o melhor desempenho foi realizado o empilhamento SRC a partir dos dados Marmousi, isto é, foi realizado um empilhamento SRC usando dois parâmetros (β₀, R_PIN) estimados por busca global e outro empilhamento SRC usando os três parâmetros (β₀, R_PIN, R_N) também estimados por busca global.

Sequenciamento de linhas de montagem múltiplas em ambiente de produção enxuta utilizando simulação

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Peptídeos cíclicos em espécies do semiárido brasileiro e uma cultivada: caracterização e atividade biológica

Pós-graduação em Química - IQ

Optimization of the sampling scheme for maps of physical and chemical properties estimated by kriging

The sampling scheme is essential in the investigation of the spatial variability of soil properties in Soil Science studies. The high costs of sampling schemes optimized with additional sampling points for each physical and chemical soil property, prevent their use in precision agriculture. The purpose of this study was to obtain an optimal sampling scheme for physical and chemical property sets and investigate its effect on the quality of soil sampling. Soil was sampled on a 42-ha area, with 206 geo-referenced points arranged in a regular grid spaced 50 m from each other, in a depth range of 0.00-0.20 m. In order to obtain an optimal sampling scheme for every physical and chemical property, a sample grid, a medium-scale variogram and the extended Spatial Simulated Annealing (SSA) method were used to minimize kriging variance. The optimization procedure was validated by constructing maps of relative improvement comparing the sample configuration before and after the process. A greater concentration of recommended points in specific areas (NW-SE direction) was observed, which also reflects a greater estimate variance at these locations. The addition of optimal samples, for specific regions, increased the accuracy up to 2 % for chemical and 1 % for physical properties. The use of a sample grid and medium-scale variogram, as previous information for the conception of additional sampling schemes, was very promising to determine the locations of these additional points for all physical and chemical soil properties, enhancing the accuracy of kriging estimates of the physical-chemical properties.

Jatrophidin I, a cyclic peptide from Brazilian Jatropha curcas L.: Isolation, characterization, conformational studies and biological activity

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Desenvolvimento de extensões para um sistema de carregamento e descarregamento de navios

One of the reasons that influences the efficience of a port terminal that is especialized in movement of containers is in the process of their loading and unloading. The fundamental idea is to determine a plan, to each port in order to decrease the number of total movement of loading and unloading that are necessary during the ship route to every port so that they save time and consequently reduce costs. The goal of this research was to present improvement in the program, written in language C, used to solve to problem of loading and unloading of ships, a NP-complete problem, through the meta-heuristics Simulated Annealing. With the improvement made, an average of 50% reduction of necessary time was gotten to solve the problem in 45 analised instances and in a specific group of these instances the average reduction reached 77 and in 10 instances there was even an improvement in the solution