Document clustering in correlation similarity measure space

This paper presents a new spectral clustering method called correlation preserving indexing (CPI), which is performed in the correlation similarity measure space. In this framework, the documents are projected into a low-dimensional semantic space in which the correlations between the documents in the local patches are maximized while the correlations between the documents outside these patches are minimized simultaneously. Since the intrinsic geometrical structure of the document space is often embedded in the similarities between the documents, correlation as a similarity measure is more suitable for detecting the intrinsic geometrical structure of the document space than euclidean distance. Consequently, the proposed CPI method can effectively discover the intrinsic structures embedded in high-dimensional document space. The effectiveness of the new method is demonstrated by extensive experiments conducted on various data sets and by comparison with existing document clustering methods.

Software similarity and classification

Software similarity and classification is an emerging topic with wide applications. It is applicable to the areas of malware detection, software theft detection, plagiarism detection, and software clone detection. Extracting program features, processing those features into suitable representations, and constructing distance metrics to define similarity and dissimilarity are the key methods to identify software variants, clones, derivatives, and classes of software. Software Similarity and Classification reviews the literature of those core concepts, in addition to relevant literature in each application and demonstrates that considering these applied problems as a similarity and classification problem enables techniques to be shared between areas. Additionally, the authors present in-depth case studies using the software similarity and classification techniques developed throughout the book.

A new framework with similarity reasoning and monotone fuzzy rule relabeling for fuzzy inference systems

A complete and monotonically-ordered fuzzy rule base is necessary to maintain the monotonicity property of a Fuzzy Inference System (FIS). In this paper, a new monotone fuzzy rule relabeling technique to relabel a non-monotone fuzzy rule base provided by domain experts is proposed. Even though the Genetic Algorithm (GA)-based monotone fuzzy rule relabeling technique has been investigated in our previous work [7], the optimality of the approach could not be guaranteed. The new fuzzy rule relabeling technique adopts a simple brute force search, and it can produce an optimal result. We also formulate a new two-stage framework that encompasses a GA-based rule selection scheme, the optimization based-Similarity Reasoning (SR) scheme, and the proposed monotone fuzzy rule relabeling technique for preserving the monotonicity property of the FIS model. Applicability of the two-stage framework to a real world problem, i.e., failure mode and effect analysis, is further demonstrated. The results clearly demonstrate the usefulness of the proposed framework.

Preparation and characterization of natural rubber/silica nanocomposites using rule of similarity in latex

Rule of similarity and latex compounding techniques were combined for the first time to prepare natural rubber/nanosilica (NR/SiO2) nanocomposite with core-shell nanosilica-poly (methyl methacrylate) (SiO 2-PMMA) particles and PMMA-modified natural rubber matrix (NR-PMMA). The microstructure of SiO2 and nanocomposites with different SiO 2 contents was characterized by fourier transform infrared spectroscopy (FTIR); the morphology of nanocomposites was investigated with scanning electron microscopy (SEM); the tensile strength was characterized by tensile testing machine and the thermal stability of composites was studied by thermal gravimetric analysis. Results showed that PMMA chains have successfully grafted onto the surface of SiO2, and the core-shell SiO 2-PMMA nanoparticles and NR-PMMA latex have been perfectly incorporated. SiO2-PMMA nanoparticles are evenly distributed over the NR matrix with an average size in the range of 60-100 nm at the low content (SiO2? 3 wt%), while aggregations are apparently observed when 5 wt% SiO2 is loaded. In addition, NR/SiO2 composities possess a considerable improvement in ageing resistance compared with the pure NR. The tensile strength of composite increases from 6.99 to 12.72 MPa, reaching the highest value at a 0.5 wt% SiO2 loading, and then the figure decreases gradually because of the aggregation of SiO2 nanoparticles. It is anticipated that the reported process is to provide a simple and economic way for preparing NR composites.

Software similarity and classification

This thesis analyses software programs in the context of their similarity to other software programs. Applications proposed and implemented include detecting malicious software and discovering security vulnerabilities.

Vector valued similarity measures for Atanassov's intuitionistic fuzzy sets

We present a new approach for defining similarity measures for Atanassov's intuitionistic fuzzy sets (AIFS), in which a similarity measure has two components indicating the similarity and hesitancy aspects. We justify that there are at least two facets of uncertainty of an AIFS, one of which is related to fuzziness while other is related to lack of knowledge or non-specificity. We propose a set of axioms and build families of similarity measures that avoid counterintuitive examples that are used to justify one similarity measure over another. We also investigate a relation to entropies of AIFS, and outline possible application of our method in decision making and image segmentation. © 2014 Elsevier Inc. All rights reserved.

Building fuzzy inference systems with similarity reasoning : NSGAII-based fuzzy rule selection and evidential functions

In our previous investigations, two Similarity Reasoning (SR)-based frameworks for tackling real-world problems have been proposed. In both frameworks, SR is used to deduce unknown fuzzy rules based on similarity of the given and unknown fuzzy rules for building a Fuzzy Inference System (FIS). In this paper, we further extend our previous findings by developing (1) a multi-objective evolutionary model for fuzzy rule selection; and (2) an evidential function to facilitate the use of both frameworks. The Non-Dominated Sorting Genetic Algorithms-p (NSGA-p) is adopted for fuzzy rule selection, in accordance with the Pareto optimal criterion. Besides that, two new evidential functions are developed, whereby given fuzzy rules are considered as evidence. Simulated and benchmark examples are included to demonstrate the applicability of these suggestions. Positive results were obtained.

Biased experts and similarity based weights in preferences aggregation

In a group decision making setting, we consider the potential impact an expert can have on the overall ranking by providing a biased assessment of the alternatives that differs substantially from the majority opinion. In the framework of similarity based averaging functions, we show that some alternative approaches to weighting the experts' inputs during the aggregation process can minimize the influence the biased expert is able to exert.

Similarity between the in vitro activity and toxicity of two different fungizone™ / lipofundin™ admixtures

Amphotericin B (AmB), an antifungal agent that presents a broad spectrum of activity, remains the gold standard in the antifungal therapy. However, sometimes the high level of toxicity forbids its clinical use. The aim of this work was to evaluate and compare the efficacy and toxicity in vitro of Fungizon™ (AmB-D) and two new different AmB formulations. Methods: three products were studied: Fungizon™, and two Fungizon™ /Lipofundin™ admixtures, which were diluted through two methods: in the first one, Fungizon™ was previously diluted with water for injection and then, in Lipofundin™ (AmB-DAL); the second method consisted of a primary dilution of AmB-D as a powder in the referred emulsion (AmB-DL). For the in vitro assay, two cell models were used: Red Blood Cells (RBC) from human donors and Candida tropicallis (Ct). The in vitro evaluation (K+ leakage, hemoglobin leakage and cell survival rate-CSR) was performed at four AmB concentrations (from 50 to 0.05mg.L-1). Results: The results showed that the action of AmB was not only concentration dependent, but also cellular type and vehicle kind dependent. At AmB concentrations of 50 mg.L-1, although the hemoglobin leakage for AmB-D was almost complete (99.51), for AmB-DAL and AmB-DL this value tended to zero. The p = 0.000 showed that AmB-D was significantly more hemolytic. Conclusion: The Fungizon™- Lipofundin™ admixtures seem to be the more valuable AmB carrier systems due to their best therapeutic index presented

Genetic similarity between staphylococcus sp isolated from human and hospital settings, and susceptibility to different antimicrobials

Foram coletadas 143 amostras de mãos de humanos e camas hospitalares, através de swabs no caldo BHI, em um hospital escola da cidade de Ribeirão Preto/SP. As amostras coletadas foram incubadas a 37ºC por 24 horas e após este período as culturas foram semeadas em placas de Petri contendo agar Staphylococcus Médium 110. As colônias típicas do gênero Staphylococcus foram colhidas e estocados a 4ºC até o momento de elaboração das provas de catalase, manitol, hemólise, DNAse e coagulase. As cepas isoladas foram analisadas através da técnica de RAPD-PCR para verificar o grau de similaridade. A sensibilidade das cepas isoladas foi testada frente a 10 diferentes antibióticos. Das 92 cepas de Staphylococcus sp isoladas, 67 (72,8%) foram identificados como Staphylococcus coagulase-negativas e 25 (27,2%) como Staphylococcus coagulase-positivas. A análise de similaridade mostrou uma grande heterogeneidade entre as cepas, entretanto foram isoladas algumas cepas com 100% de similaridade. Resistência a oxacilina foi encontrada em 39 (42%) cepas. Duas cepas de estafilococos coagulase-negativos mostraram-se resistentes a vancomicina. Onze cepas (12%) de estafilococos foram consideradas multirresistentes. Medidas de desinfecção das mãos de pessoal e dos leitos hospitalares e a racionalização do uso indiscriminado de antibióticos podem contribuir para a queda da transmissão de patógenos e diminuição da pressão de seleção, e conseqüentemente diminuindo a freqüência e letalidade das infecções nosocomiais.

Karyotypic similarity among Barycholos temetzi and five species of the genus Eleutherodactylus from southeastern Brazil (Anura, Brachycephalidae)

Comparative cytogenetic analyses were carried out in six species of Brachycephalidae from southeastern Brazil. Barycholos ternetzi, Eleutherodactylus binotatus, Eleutherodactylus guentheri, Eleutherodactylus juipoca, Eleutherodactylus parvus and Eleutherodactylus sp. have 2n = 22 karyotypes with a marked variation in the morphology of chromosome pairs 8, 10 and 11, which are of telocentric or metacentric types, resulting in FN = 38, 40 and 44. Eleutherodactylus have a single chromosome pair bearing Ag-NOR, i.e. pair 1 in E. binotatus, pair 6 in E. guentheri and E. parvus, and pair 11 in E. juipoca and Eleutherodactylus sp. In contrast, B. ternetzi showed Ag-positive sites in the chromosome pairs 1, 4, 5, 9 and 11, and only one to three labelings per metdphase in each individual. Nevertheless, the main chromosome pair with Ag-NOR in the species seems to be the 11th, like in E. juipoca and Eleutherodactylus sp. The NOR site was confirmed by fluorescence in situ hybridization (FISH) technique in E. binotatus and in B. ternetzi, bearing 1p1p and 9p11p11p Ag-NOR pattern, respectively. All the species exhibited predominantly centromeric C-banding pattern, but interstitial bands have also been observed in some cases. In E. binotatus, there is an indication of geographical difference in the distribution of the interstitial C-bands. The fluorochromes GC-specific chromomycin A(3) (CMA(3)) and AT-specific 4',6-diamidino-2-phenylindole (DAPI), with distamycin A (DA) counterstaining, provided the molecular content of some repetitive regions in the karyotypes of the species. One male of E. binotatus presented an extensive heteromorphism, involving at least five different pairs, probably as a consequence of multiple reciprocal translocations. Such rearrangements might be responsible for the multivalent chain seen in the meiosis of this specimen, as well as in another male, although not exhibiting chromosome heteromorphism. The remaining males and those belonging to the other species have always shown 11 bivalents in diplotene and metaphase I cells. In all male specimens, metaphases II presented 11 chromosomes. Despite the observed discrepancies, the five species of Eleutherodactylus have a great uniformity in the 2n = 22 karyotypes, suggesting an assemblage of species from southeastern and southern Brazil, in contrast to northern and northeastern assemblage which is characterized by higher diploid numbers. Undoubtedly, B. ternetzi could be included in that proposed assemblage, due to its karyotypic similarity with the Eleutherodactylus species, as evidenced in the present study. This fact strongly supports the close relationships of both genera, previously inferred on the basis of several characters shared by their species. (C) 2006 Elsevier Ltd. All rights reserved.

Chromosomal mapping of repetitive DNAs in the beetle Dichotomius geminatus provides the first evidence for an association of 5S rRNA and histone H3 genes in insects, and repetitive DNA similarity between the B chromosome and A complement

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Similarity of ground-dwelling anuran (Amphibia) composition among different vegetation physiognomies in a Mesophytic Semideciduous Forest from southeastern Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)