Polimorfismos genéticos no gene XRCC3 e dano no DNA em trabalhadores expostos ocupacionalmente a formaldeído

A exposição a formaldeído (FA), classificado como cancerígeno pela International Agency for Cancer Research (IARC), está epidemiologicamente associada a cancro e a alterações nucleares detectáveis pelo ensaio dos micronúcleos por bloqueio da citocinese (CBMN). Este método permite determinar vários marcadores de genotoxicidade, nomeadamente micronúcleos – biomarcadores de quebra ou perda de cromossomas; pontes nucleoplásmicas – biomarcador de re-arranjo cromossómico, pouca reparação e fusão de telómeros e, protusões nucleares – biomarcador de DNA amplificado. O gene X-ray repair cross-complementing group 3 (XRCC3) está envolvido na reparação de ligações cruzadas na recombinação de homólogos e quebras na cadeia dupla de DNA. Foi reportado pelo menos um polimorfismo no gene, o Thr241Met que tem sido associado a um aumento do dnao no DNA em vários estudos.

Effects of physical exercise training in DNA damage and repair - could the difference be in hOGG1 Ser326Cys polymorphism?

Acute physical exercise is associated with increased oxygen consumption, which could result in an increased formation of reactive oxygen species (ROS). ROS can react with several organic structures, namely DNA, causing strand breaks and a variety of modified bases in DNA. Physical exercise training seems to decrease the incidence of oxidative stress-associated diseases, and is considered as a key component of a healthy lifestyle. This is a result of exercise-induced adaptation, which has been associated with the possible increase in antioxidant activity and in oxidative damage repair enzymes, leading to an improved physiological function and enhanced resistance to oxidative stress (Radak et al. 2008). Human 8-oxoguanine DNA glycosylase 1 (hOGG1) is involved in the base excision repair (BER) pathway and encodes an enzyme responsible for removing the most common product of oxidative damage in DNA, 8-hydroxyguanine (8-OH-G). The genetic polymorphism of hOGG1 at codon 326 results in a serine (Ser) to cysteine (Cys) amino acid substitution (Ser326Cys). It has been suggested that the carriers of at least one hOGG1Cys variant allele exhibit lower 8-OH-G excision activity than the wild-type (Wilson et al. 2011). The aim of this study was to investigate the possible influence of hOGG1 Ser326Cys polymorphism on DNA damage and repair activity in response to 16 weeks of combined physical exercise training, in thirty healthy Caucasian men. Comet assay was carried out using peripheral blood lymphocytes and enabled the evaluation of DNA damage, both strand breaks and FPG-sensitive sites, and DNA repair activity. Genotypes were determined by PCR-RFLP analysis. The subjects with Ser/Ser genotype were considered as wild-type group (n=20), Ser/Cys and Cys/Cys genotype were analyzed together as mutant group (n=10). Regarding differences between pre and post-training in the wild-type group, the results showed a significant decrease in DNA strand breaks (DNA SBs) (p=0.002) and also in FPG-sensitive sites (p=0.017). No significant differences were observed in weight (p=0.389) and in lipid peroxidation (MDA) (p=0.102). A significant increase in total antioxidant capacity (evaluated by ABTS) was observed (p=0.010). Regarding mutant group, the results showed a significant decrease in DNA SBs (p=0.008) and in weight (p=0.028). No significant differences were observed in FPG-sensitive sites (p=0.916), in ABTS (p=0.074) and in MDA (p=0.086). No significant changes in DNA repair activity were observed in both genotype groups. This preliminary study suggests the possibility of different responses in DNA damage to physical exercise training, considering the hOGG1 Ser326Cys polymorphism.

Estudos de adsorção sobre materiais porosos e preparação de carvões mesoporosos usando como matriz argilas porosas heteroestruturadas

Este trabalho foi desenvolvido, tendo como base dois objectivos principais; a montagem e calibração de uma instalação volumétrica para estudos de adsorção e a preparação de carvões mesoporosos com base em matrizes constituídas por materiais inorgânicos mesoestruturados. Foi estudada a utilização de uma argila porosa heteroestruturada (PCH) como matriz, recorrendo ao álcool furfurílico como precursor de carvão. Alguns carvões foram preparados usando SBA-15 como matriz com o mesmo precursor de carvão ou com a sacarose. A preparação destes carvões envolveu a infiltração de um precursor de carvão nos poros da matriz, polimerização do precursor, carbonização do compósito formado, remoção da matriz com ácido fluorídrico e lavagem dos carvões obtidos. Este trabalho incidiu ainda no estudo da utilização do ácido p-toluenosulfónico como catalisador da polimerização do precursor de carvão e estudar o modo como o tipo de matriz e o número de ciclos de infiltração-polimerização afectam as características dos carvões obtidos. Os métodos de preparação dos carvões CMK-3 e CMK-5, foram seguidos conforme descritos na literatura, com o objectivo de reproduzir estas estruturas. As matrizes e os carvões foram caracterizados recorrendo à realização de isotérmicas de adsorção de azoto. Técnicas de difracção de raios X e microscopia electrónica de varrimento. A eficiência da remoção da matriz foi avaliada através da determinação do teor de cinza e a eficiência da lavagem dos carvões foi verificada através da determinação do ponto de carga zero e do teor em fluoreto. Foi verificada a eficiência dos métodos de remoção e lavagem dos carvões, bem como a reprodutibilidade do seu processo de preparação. Foi possível a preparação de carvões mesoporosos sem ser necessário o uso do catalisador, independentemente do tipo de matriz. O catalisador apenas teve impacto nos carvões preparados com dois ciclos de impregnação-polimerização, ocorrendo um aumento da mesoporosidade da amostra. Variando a amina usada na preparação da PCH (octilamina, decilamina, dodecilamina), foi possível obter carvões com propriedades textuais distintas, demonstrando a versatilidade das argilas porosas heteroestruturais como matrizes inorgânicas. Não foi possível reproduzir todas as características das amostras apresentadas na literatura, tendo-se contudo verificado a influência do método de carbonização.

DNA interaction and cytotoxicity studies of new ruthenium(II) cyclopentadienyl derivative complexescontaining heteroaromatic ligands

Four ruthenium(II) complexes with the formula [Ru(eta(5)-C(5)H(5))(PP)L][CF(3)SO(3)], being (PP = two triphenylphosphine molecules), L = 1-benzylimidazole, 1; (PP = two triphenylphosphine molecules), L = 2,2'bipyridine, 2; (PP = two triphenylphosphine molecules), L = 4-Methylpyridine, 3; (PP = 1,2-bis(diphenylphosphine) ethane), L = 4-Methylpyridine, 4, were prepared, in view to evaluate their potentialities as antitumor agents. The compounds were completely characterized by NMR spectroscopy and their crystal and molecular structures were determined by X-ray diffraction. Electrochemical studies were carried out giving for all the compounds quasi-reversible processes. The images obtained by atomic force microscopy (AFM) suggest interaction with pBR322 plasmid DNA. Measurements of the viscosity of solutions of free DNA and DNA incubated with different concentrations of the compounds confirmed this interaction. The cytotoxicity of compounds 1234 was much higher than that of cisplatin against human leukemia cancer cells (HL-60 cells). IC(50) values for all the compounds are in the range of submicromolar amounts. Apoptotic death percentage was also studied resulting similar than that of cisplatin. (C) 2010 Elsevier Inc. All rights reserved.

Entropy analysis of DNA code dynamics in human chromosomes

Deoxyribonucleic acid, or DNA, is the most fundamental aspect of life but present day scientific knowledge has merely scratched the surface of the problem posed by its decoding. While experimental methods provide insightful clues, the adoption of analysis tools supported by the formalism of mathematics will lead to a systematic and solid build-up of knowledge. This paper studies human DNA from the perspective of system dynamics. By associating entropy and the Fourier transform, several global properties of the code are revealed. The fractional order characteristics emerge as a natural consequence of the information content. These properties constitute a small piece of scientific knowledge that will support further efforts towards the final aim of establishing a comprehensive theory of the phenomena involved in life.

Shannon, rényie and tsallis entropy analysis of DNA using phase plane

This paper analyzes DNA information using entropy and phase plane concepts. First, the DNA code is converted into a numerical format by means of histograms that capture DNA sequence length ranging from one up to ten bases. This strategy measures dynamical evolutions from 4 up to 410 signal states. The resulting histograms are analyzed using three distinct entropy formulations namely the Shannon, Rényie and Tsallis definitions. Charts of entropy versus sequence length are applied to a set of twenty four species, characterizing 486 chromosomes. The information is synthesized and visualized by adapting phase plane concepts leading to a categorical representation of chromosomes and species.

Fractional dynamics in DNA

This paper addresses the DNA code analysis in the perspective of dynamics and fractional calculus. Several mathematical tools are selected to establish a quantitative method without distorting the alphabet represented by the sequence of DNA bases. The association of Gray code, Fourier transform and fractional calculus leads to a categorical representation of species and chromosomes.

Wavelet analysis of human DNA

This paper studies the human DNA in the perspective of signal processing. Six wavelets are tested for analyzing the information content of the human DNA. By adopting real Shannon wavelet several fundamental properties of the code are revealed. A quantitative comparison of the chromosomes and visualization through multidimensional and dendograms is developed.

Histogram-based DNA analysis for the visualization of chromosome, genome and species information

We describe a novel approach to explore DNA nucleotide sequence data, aiming to produce high-level categorical and structural information about the underlying chromosomes, genomes and species. The article starts by analyzing chromosomal data through histograms using fixed length DNA sequences. After creating the DNA-related histograms, a correlation between pairs of histograms is computed, producing a global correlation matrix. These data are then used as input to several data processing methods for information extraction and tabular/graphical output generation. A set of 18 species is processed and the extensive results reveal that the proposed method is able to generate significant and diversified outputs, in good accordance with current scientific knowledge in domains such as genomics and phylogenetics.

Delineamento e validação de matriz de exposição ocupacional à sílica

OBJETIVO: Desenvolver matriz de exposição ocupacional de base populacional para a sílica cristalina no Brasil e estimar sua validade. MÉTODOS: A matriz de exposição ocupacional foi desenvolvida por um epidemiologista e um higienista ocupacional em quatro etapas: a) codificação da variável ocupação; b) codificação da variável setor econômico; c) classificação da exposição por consenso entre os pesquisadores e; d) estimativa do número de trabalhadores registrados, em 1995, para cada nível de exposição. As 8.675 células da matriz, formadas pela intersecção das variáveis setor econômico (25 colunas) e ocupação (347 linhas), foram classificadas de acordo com a freqüência da exposição à sílica em quatro níveis: não expostos, possivelmente expostos, provavelmente expostos e definitivamente expostos. Para a validação da matriz de exposição ocupacional, cinco setores econômicos (extração mineral, construção civil, metalurgia, administração de serviços de pessoal técnico e indústria têxtil) foram re-codificados quanto à exposição por peritos convidados. Avaliou-se a confiabilidade pela proporção de acordos e o grau de concordância pelo Kappa. RESULTADOS: A matriz de exposição ocupacional apresentou alta concordância geral, variando de 64,0% na metalurgia a 94,4% na extração mineral. O Kappa revelou boa concordância no setor de extração mineral (0,9) e baixa ou regular nos demais (variação de 0,1 a 0,5). A especificidade foi alta para os setores de metalurgia (86,5%) e extração mineral (100,0%). A construção civil apresentou especificidade de 56,0%. CONCLUSÕES: A matriz de exposição ocupacional apresentou boa acurácia, revelando-se adequada para estimar a exposição à sílica na força de trabalho ocupada no País.

On the DNA of eleven mammals

This paper studies the DNA code of eleven mammals from the perspective of fractional dynamics. The application of Fourier transform and power law trendlines leads to a categorical representation of species and chromosomes. The DNA information reveals long range memory characteristics.

Multi-dimensional scaling applied to histogram-based DNA analysis

This paper aims to study the relationships between chromosomal DNA sequences of twenty species. We propose a methodology combining DNA-based word frequency histograms, correlation methods, and an MDS technique to visualize structural information underlying chromosomes (CRs) and species. Four statistical measures are tested (Minkowski, Cosine, Pearson product-moment, and Kendall τ rank correlations) to analyze the information content of 421 nuclear CRs from twenty species. The proposed methodology is built on mathematical tools and allows the analysis and visualization of very large amounts of stream data, like DNA sequences, with almost no assumptions other than the predefined DNA “word length.” This methodology is able to produce comprehensible three-dimensional visualizations of CR clustering and related spatial and structural patterns. The results of the four test correlation scenarios show that the high-level information clusterings produced by the MDS tool are qualitatively similar, with small variations due to each correlation method characteristics, and that the clusterings are a consequence of the input data and not method’s artifacts.

A DNA barcode approach of the Laurencia complex (Ceramiales, Rodophyta) in the tropical and subtropical Atlantic ocean

10th International Phycological Congress, Orlando, Florida, USA, 4-10 de agosto 2013.

DNA-barcoding revela la existencia de un posible nuevo género del complejo Laurencia (Rodophyta, Ceramiales) en las islas Canarias

XIX Simposio de Botánica Criptogámica, Las Palmas de Gran Canaria, 24-28 de junio de 2013.

Depleção do DNA mitocondrial (mtDNA) em leucócitos de doentes com doença Machado-Joseph : um estudo piloto

Dissertação de Mestrado, Ciências Biomédicas, 5 de Outubro de 2015, Universidade dos Açores.