Shannon, rényie and tsallis entropy analysis of DNA using phase plane
Data(s) |
22/04/2013
22/04/2013
2011
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Resumo |
This paper analyzes DNA information using entropy and phase plane concepts. First, the DNA code is converted into a numerical format by means of histograms that capture DNA sequence length ranging from one up to ten bases. This strategy measures dynamical evolutions from 4 up to 410 signal states. The resulting histograms are analyzed using three distinct entropy formulations namely the Shannon, Rényie and Tsallis definitions. Charts of entropy versus sequence length are applied to a set of twenty four species, characterizing 486 chromosomes. The information is synthesized and visualized by adapting phase plane concepts leading to a categorical representation of chromosomes and species. |
Identificador |
DOI 10.1016/j.nonrwa.2011.05.013 1468-1218 |
Idioma(s) |
eng |
Publicador |
Elsevier |
Relação |
Nonlinear Analysis: Real World Applications; Vol. 12, Issue 6 http://www.sciencedirect.com/science/article/pii/S1468121811001088 |
Direitos |
restrictedAccess |
Palavras-Chave | #DNA #Chromosome #Entropy #Phase plane |
Tipo |
article |