Shannon, rényie and tsallis entropy analysis of DNA using phase plane


Autoria(s): Costa, António Cardoso; Machado, J. A. Tenreiro; Quelhas, Dulce
Data(s)

22/04/2013

22/04/2013

2011

Resumo

This paper analyzes DNA information using entropy and phase plane concepts. First, the DNA code is converted into a numerical format by means of histograms that capture DNA sequence length ranging from one up to ten bases. This strategy measures dynamical evolutions from 4 up to 410 signal states. The resulting histograms are analyzed using three distinct entropy formulations namely the Shannon, Rényie and Tsallis definitions. Charts of entropy versus sequence length are applied to a set of twenty four species, characterizing 486 chromosomes. The information is synthesized and visualized by adapting phase plane concepts leading to a categorical representation of chromosomes and species.

Identificador

DOI 10.1016/j.nonrwa.2011.05.013

1468-1218

http://hdl.handle.net/10400.22/1453

Idioma(s)

eng

Publicador

Elsevier

Relação

Nonlinear Analysis: Real World Applications; Vol. 12, Issue 6

http://www.sciencedirect.com/science/article/pii/S1468121811001088

Direitos

restrictedAccess

Palavras-Chave #DNA #Chromosome #Entropy #Phase plane
Tipo

article