Shannon, rényie and tsallis entropy analysis of DNA using phase plane
| Data(s) |
22/04/2013
22/04/2013
2011
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|---|---|
| Resumo |
This paper analyzes DNA information using entropy and phase plane concepts. First, the DNA code is converted into a numerical format by means of histograms that capture DNA sequence length ranging from one up to ten bases. This strategy measures dynamical evolutions from 4 up to 410 signal states. The resulting histograms are analyzed using three distinct entropy formulations namely the Shannon, Rényie and Tsallis definitions. Charts of entropy versus sequence length are applied to a set of twenty four species, characterizing 486 chromosomes. The information is synthesized and visualized by adapting phase plane concepts leading to a categorical representation of chromosomes and species. |
| Identificador |
DOI 10.1016/j.nonrwa.2011.05.013 1468-1218 |
| Idioma(s) |
eng |
| Publicador |
Elsevier |
| Relação |
Nonlinear Analysis: Real World Applications; Vol. 12, Issue 6 http://www.sciencedirect.com/science/article/pii/S1468121811001088 |
| Direitos |
restrictedAccess |
| Palavras-Chave | #DNA #Chromosome #Entropy #Phase plane |
| Tipo |
article |