Accurate sodium bisulfite sequencing in plants.

DNA cytosine methylation is a conserved epigenetic modification frequently correlating with transcriptional silencing in a wide variety of eukaryotic organisms. Sodium bisulfite treatment of DNA converts unmethylated cytosine to uracil, while 5-methylated cytosine is protected. We describe techniques that ensure reliable sequencing data following sodium bisulfite conversion and to avoid common pitfalls such as amplification of unconverted DNA and inclusion of sibling clones.

Non più mesta accanto al fuoco : floración operística del mito de Cenicienta

Resumen: Este artículo se aboca a un análisis comparativo de tres óperas basadas en el mito de Cenicienta, a partir de las versiones literarias canónicas de Basile, Perrault y Grimm: La Cenerentola de Rossini-Ferretti (1817), Cendrillon de Massenet-Cain (1899), y ¡Cenicientaaa...! de Lambertini (2008). Consideramos aspectos míticos del relato, como el combate cosmogónico, la unión hierogámica, la rivalidad fraterna y el complejo edípico, y estudiamos su vigencia y sus mutaciones a través de las sucesivas estéticas que corresponden a las tres óperas señaladas: iluminismo, romanticismo, posmodernidad.

Basoa Euskal Herriko historian zehar

[EUS]Antzinako errejimenean basoa bizitzaren bizigunea zen.Garai honetan jarduera gehienak basoaren inguruan kokatzen ziren: gizakumeen elikadura, abereen janaria, ehiza,etxeko sua, ikatzaren industria,eraikinak, nekazaritza, etxeko eta teknika tresnak, ontzigintza, e.a. Horregati, basoak izan zuen bilakaera jarduera hauekin oso lotuta zegoen. Gipuzkoa eta Bizkaia jarduera hauen arteko eta basoaren inguruko aurkakotasuna bortitza baino bortitzagoa izan zuen. Egun, gauzak aldatu dira, basoak ez du ekonomiarekiko hainbeste garrantzirik. Momentu honetan basoarekiko interesa izadiaren kontserbatzioan eta suntsiketan datza

Microglia in the cerebral and cerebellar cortices in individuals with autism

In this thesis, we explore the density of the microglia in the cerebral and cerebellar cortices of individuals with autism to investigate the hypothesis that neuroinflammation is involved in autism. We describe in our findings an increase in microglial density in two disparate cortical regions, frontal insular cortex and visual cortex, in individuals with autism (Tetreault et al., 2012). Our results imply that there is a global increase in the microglial density and neuroinflammation in the cerebral cortex of individuals with autism.

We expanded our cerebellar study to additional neurodevelopmental disorders that exhibit similar behaviors to autism spectrum disorder and have known cerebellar pathology. We subsequently found a more than threefold increase in the microglial density specific to the molecular layer of the cerebellum, which is the region of the Purkinje and parallel fiber synapses, in individuals with autism and Rett syndrome. Moreover, we report that not only is there an increase in microglia density in the molecular layer, the microglial cell bodies are significantly larger in perimeter and area in individuals with autism spectrum disorder and Rett syndrome compared to controls that implies that the microglia are activated. Additionally, an individual with Angelman syndrome and the sibling of an individual with autism have microglial densities similar to the individuals with autism and Rett syndrome. By contrast, an individual with Joubert syndrome, which is a developmental hypoplasia of the cerebellar vermis, had a normal density of microglia, indicating the specific pathology in the cerebellum does not necessarily result in increased microglial densities. We found a significant decrease in Purkinje cells specific to the cerebellar vermis in individuals with autism.

These findings indicate the importance for investigation of the Purkinje synapses in autism and that the relationship between the microglia and the synapses is of great utility in understanding the pathology in autism. Together, these data provide further evidence for the neuroinflammation hypothesis in autism and a basis for future investigation of neuroinflammation in autism. In particular, investigating the function of microglia in modifying synaptic connectivity in the cerebellum may provide key insights into developing therapeutics in autism spectrum disorder.

The interaction of color and luminance in stereoscopic vision

Experiments are described using the random dot stereo patterns devised by Julesz, but substituting various colors and luminances for the usual black and white random squares. The ability to perceive the patterns in depth depends on a luminance difference between the colors used. If two colors are the same luminance, then depth is not perceived although each of the individual squares which make up the patterns is easily seen due to the color difference. This is true for any combination of different colors. If different colors are used for corresponding random squares between the left and right eye patterns, stereopsis is possible for all combinations of binocular rivalry in color, provided the luminance difference is large enough. Rivalry in luminance always precludes stereopsis, regardless of the colors involved.

Brasil e Argentina sob Lula e Kirchner(s): percepções de políticas externas e efeito sobre o Mercosul (20032010)

Brasil e Argentina nutriram ao longo de décadas sentimento de rivalidade. Aos poucos, tal sentimento foi substituído pela cooperação e consequentemente integração entre os mesmos. A aproximação entre os países culminou na formulação do Mercado Comum do Sul, um dos blocos mais importantes da região sul-americana. Porém, ao longo da década de 1990, a organização passou por momentos de crises, bem como as próprias economias nacionais. Isto provocou a possibilidade de haver retrocesso ou até mesmo a dissolução do bloco que, em períodos anteriores, já tinha proporcionado aumento de fluxo de comércio e de confiança entre seus dois membros maiores. No entanto, a partir de 2003, novos governantes que assumiram o cargo de presidente no Brasil e na Argentina propiciaram uma mudança naquele contexto. Luiz Inácio Lula da Silva, presidente do Brasil, e Néstor Kirchner, presidente da Argentina, subiram ao poder com ideias e objetivos muito semelhantes para a integração regional. Também, havia grande preocupação com o outro em termos de política externa, considerado como forte parceiro em termos políticos, estratégicos e econômicos. A partir da aplicação de literaturas que colocavam o Estado como figura central na elaboração de política externa e de mudanças na mesma, assim como daquelas que estudam o período de 2003 a 2010, avalia-se Brasil e Argentina. O segundo mandato de Lula e o mandato de Cristina Fernández de Kirchner também são estudados, porque são considerados governos de continuidade aos anteriores. A partir desta reaproximação de Brasil e Argentina, enquanto Estados, pode-se perceber uma mudança na reconfiguração do Mercosul. Há maior interesse político para que o bloco seguisse por caminhos que não o meramente comercial. Desde então, há maior quantidade de iniciativas dentro do bloco, e maior disponibilidade e confiança por parte dos governos.

Tudo nos une, nada nos separa, exceto o futebol: um olhar sobre as relações exteriores entre Brasil e Argentina (1978-2002)

O futebol é um esporte que possui diversas dimensões e que pode ter várias utilidades, usos e implicações tanto na vida dos seres humanos quanto nas relações entre os Estados. Ele pode servir à objetivos políticos de um Estado, pode agir como um veículo de propagação de ideias e valores, pode servir como uma ferramenta de propaganda e prestígio internacionais, pode constituir um instrumento para ganhos econômicos, entre muitas outras utilizações possíveis. No caso do Brasil, o futebol também constitui um elemento importante da identidade nacional e também, por vezes, influi na percepção que os brasileiros têm de seus vizinhos argentinos. A imagem que o Brasil tem da Argentina é de um país soberbo, arrogante e não confiável, todos estereótipos que são constantemente veiculados pelas mídias brasileiras desde muitas décadas atrás. Partindo dessas premissas, a presente dissertação tem como objetivo analisar as percepções sobre a Argentina veiculadas na mídia esportiva brasileira, buscando correlacioná-las com as relações exteriores entre Brasil e Argentina. Dessa forma, se buscará averiguar se as mudanças no relacionamento bilateral entre estes, acompanha uma mudança também nas caracterizações e percepções da seleção argentina e de seu país. Para tanto, foram escolhidos quatro períodos que representam momentos-chave da relação bilateral entre esses dois países: as Copas Mundiais de Futebol de 1978, 1982, 1986 e 2002. Cada um desses períodos escolhidos possui um contexto diferente, de maior amizade ou rivalidade entre esses países vizinhos, propiciando uma análise da relação entre as percepções veiculadas na mídia esportiva e a relações exteriores entre Brasil e Argentina em diferentes contextos temporais e políticos.

A Igreja no Brasil e o zelo pastoral de D. José Joaquim Justiniano Mascarenhas Castelo Branco: breve olhar sobre a implementação do catolicismo colonial e seus reflexos no sétimo episcopado carioca do século XVIII

A presente pesquisa aborda a formação da identidade da religião católica no Brasil colonial e seus reflexos nos desregramentos recorrentes na segunda metade do século XVIII, na diocese de São Sebastião do Rio de Janeiro durante o episcopado de D. José Joaquim Justiniano Mascarenhas Castelo Branco (1773 1805) tendo sido este o primeiro bispo a assumir o comando de sua diocese natal. O tema proposto aborda diretamente a complexa relação entre os poderes temporal, representado pelo Estado português personificado na figura da realeza , e o espiritual, pertencente à Igreja sua representatividade máxima no local varia de acordo com a posição ocupada pelos clérigos, respeitando-se, assim, a hierarquia eclesiástica (monges, freiras, padres, bispos etc.). Apesar da obrigatoriedade do catolicismo na colônia, a coroa metropolitana não foi capaz de dar o suporte necessário para o estabelecimento de uma religiosidade fiel às determinações do Concilio de Trento, conforme determinava o direito de Padroado. Isso levou à formação de um catolicismo colonial por vezes aparente. A miscigenação étnico-cultural deu brecha para o surgimento de praticas sincréticas e diferentes comportamentos sociais reprovados pela Igreja. O desvio de conduta era um problema que afetava, não só os fiéis, mas também o clero, sendo este composto na época por sacerdotes mal formados e alguns estrangeiros de índoles duvidosas. Assim, os bispos do Brasil do século XVIII tiveram que lidar com problemas que eram, na verdade, reflexo da realidade da estrutura colonizadora local onde, apesar de ter sido a Igreja uma importante aliada do Estado lusitano, e vice-versa, havia também grande rivalidade entre ambos. Dessa forma, ocorriam na época constantes embates entre as autoridades civil e religiosa, as quaisuniam-se e desuniam-se de acordo com seus interesses.

Major histocompatibility complex class I involvement in the rejection of allogeneic erythrocytes in rainbow trout (Oncorhynchus mykiss)

Major histocompatibility complex genes are thought to be involved in allogeneic graft rejection but not many reports are available on their functional analysis in fish. Analysis of available sequences of MHC genes suggests functions in antigen presentation similar to those found in higher vertebrates. In mammals, the MHC class I and class II molecules are major determinants of allogeneic graft rejection due to their polymorphism in conjunction with their antigen presenting function. In fish, MHC class H molecules are found to be involved in rejection of allogeneic scale grafts. The present study was designed to investigate the involvement of MHC class I molecules in allograft rejection. Erythrocytes were collected from donors of rainbow trout expressed different class MHC class I alleles, stained with two dyes, mixed and grafted to the recipients that were of the same sibling group as the donors. The grafts were rejected by allogeneic recipients and the MHC class I linkage group was the major determinant for the rejection.

Drosophila subpulchrella, a new species of the Drosophila suzukii species subgroup from Japan and China (Diptera : Drosophilidae)

Drosophila (Sophophora) subpulchrella Takamori and Watabe, sp. nov., of the D. suzukii subgroup in the D. melanogaster species group, is described from Japan and southern China, and compared with its sibling species, D. pulchrella Tan et al. distributed i

Molecular phylogeny and taxonomy of wood mice (genus Apodemus Kaup, 1829) based on complete mtDNA cytochrome b sequences, with emphasis on Chinese species

Phylogenetic relationships among 15 species of wood mice (genus Apodemus) were reconstructed to explore some long-standing taxonomic problems. The results provided support for the monophyly of the genus Apodemus, but could not reject the hypothesis of paraphyly for this genus. Our data divided the 15 species into four major groups: (1) the Sylvaemus group (A. sylvaticus, A. flavicollis, A. alpicola, and A. uralensis), (2) the Apodemus group (A. peninsulae, A. chevreri, A. agrarius, A. speciosus, A. draco, A. ilex, A. semotus, A. latronum, and A. mystacinus), (3) A. argenteus, and (4) A. gurkha. Our results also suggested that orestes should be a valid subspecies of A. draco rather than an independent species; in contrast, A. ilex from Yunnan may be regarded as a separate species rather than a synonym of orestes or draco. The species level status of A. latronum, tscherga as synonyms of A. uralensis, and A. chevrieri as a valid species and the closest sibling species of A. agrarius were further corroborated by our data. Applying a molecular clock with the divergences of Mus and Rattus set at 12 million years ago (Mya) as a calibration point, it was estimated that five old lineages (A. mystacinus and four major groups above) diverged in the late Miocene (7.82-12.74 Mya). Then the Apodemus group (excluding A. mystacinus) split into two subgroups: agrarius and draco, at about 7.17-9.95 Mya. Four species of the Sylvaemus group were estimated to diverge at about 2.92-5.21 Mya. The Hengduan Mountains Region was hypothesized to have played important roles in Apodemus evolutionary histories since the Pleistocene. (C) 2004 Elsevier Inc. All rights reserved.

Phylogeny of east Asian bufonids inferred from mitochondrial DNA sequences (Anura : Amphibia)

We investigated the relationships of Asian bufonids using partial sequences of mitochondrial DNA genes. Twenty-six samples representing 14 species of Bufo from China and Vietnam and 2 species of Torrentophryne from China were examined. Three samples of Bufo viridis from Armenia and Georgia were also sequenced to make a comparison to its sibling tetraploid species B. danatensis. Bufo americanus, from Canada, was used as the outgroup. Sequences from the 12S ribosomal RNA, 16S ribosomal RNA, cytochrome b, and the control region were analyzed using parsimony. East Asian bufonids were grouped into two major clades. One clade included B. andrewsi, B. bankorensis, B. gargarizans, B. tibetanus, B. tuberculatus, its sister clade B. cryptotympanicus, and the 2 species of Torrentophryne. The second clade consisted of B. galeatus, B. himalayanus, B. melanostictus, and a new species from Vietnam. The placement of three taxa (B. raddei B. viridis, and its sister species, B. danatensis) was problematic. The genus Torrentophryne should be synonymized with Bufo to remove paraphyly. Because B. raddei does not belong to the clade that includes B. viridis and B. danatensis, it was removed from the viridis species group. The species status of B bankorensis from Taiwan is evaluated. (C) 2000 Academic Press.

Change propagation analysis in complex technical systems

Understanding how and why changes propagate during engineering design is critical because most products and systems emerge from predecessors and not through clean sheet design. This paper applies change propagation analysis methods and extends prior reasoning through examination of a large data set from industry including 41,500 change requests, spanning 8 years during the design of a complex sensor system. Different methods are used to analyze the data and the results are compared to each other and evaluated in the context of previous findings. In particular the networks of connected parent, child and sibling changes are resolved over time and mapped to 46 subsystem areas. A normalized change propagation index (CPI) is then developed, showing the relative strength of each area on the absorber-multiplier spectrum between -1 and +1. Multipliers send out more changes than they receive and are good candidates for more focused change management. Another interesting finding is the quantitative confirmation of the "ripple" change pattern. Unlike the earlier prediction, however, it was found that the peak of cyclical change activity occurred late in the program driven by systems integration and functional testing. Patterns emerged from the data and offer clear implications for technical change management approaches in system design. Copyright © 2007 by ASME.

Non-monophyly of fish in the Sinipercidae (Perciformes) as inferred from cytochrome b gene

The sinipercids represent a group of 12 species of freshwater percoid fish, including nine in Siniperca and three species in Coreoperca. Despite several classification attempts and a preliminary molecular phylogeny, the phylogenetic relationships and systematic position of sinipercids remained still unsolved. The complete cytochrome b gene sequences from nine sinipercid species four non-sinipercid fish species were cloned, and a total of 12 cyt b sequences from 10 species of sinipercids and 11 cyt b sequences from 10 species of non-sinipercid fish also in Perciformes were included in the phylogenetic analysis. As expected, the two genera Siniperca and Coreoperca within sinipercids are recovered as monophyletic. However, nine species representing Moronidae, Serranidae, Centropomidae, Acropomatidae, Emmelichtyidae, Siganidae and Centrarchidae included in the present study are all nested between Coreoperca and Siniperca, which provides marked evidence for a non-monophyly of sinipercid fishes. Coreoperca appears to be closest to Centrachus representing the family Centrarchidae. Coreoperca whiteheadi and C. herzi are sibling species, which together are closely related to C. kawamebari. In the Siniperca, the node between S. roulei and the remaining species is the most ancestral, followed by that of S. fortis. S. chuatsi and S. kneri are sibling species, sister to S. obscura. However, the sinipercids do not seem to have a very clear phylogenetic history, for different methods of phylogenetic reconstruction result in different tree topologies, and the only conclusive result in favor of a paraphyletic origin of the two sinipercid genera is the parametric bootstrap test. The paraphyly of Sinipercidae may suggest that the "synapomorphs" such as cycloid scales, upon which this family is based, were independently derived at least twice within sinipercid fishes, and further study should be carried out to include the other two Siniperca species and to incorporate other genes.

烟草依赖者的注意偏向研究

Relapse has been a great challenge in clinical treatment and experimental studies of drug addiction. Recent studies suggest that psychological dependence may play a major role in addiction relapse, even more important than physiological dependence. Then a fundamental question arises: how to measure the psychological dependence? How to examine whether an addict has psychologically quitted when leaving drug rehabilitation centers? Self-report, a commonly used evaluation approach, is inevitably vulnerable to various cognitive influences, particularly in explicit tasks. Therefore, an objective index is necessary to evaluate the subliminal psychological drug dependence level. The objective of the current study was to develop such a psychological paradigm to probe the unaware attentional bias of in smoking addicts. Experiment 1 adapted the interocular suppression technique of binocular rivalry to study the attentional bias to cigarette pictures in smokers and age-matched nonsmoker. Results show that the smokers demonstrated similar attentional bias in both visible and unaware conditions, while non-smokers showed attentional bias only in the visible condition, and there was a significant interaction between experiment conditions and subject groups. These results provide compelling evidence for addiction-specific attentional bias in cigarette smokers, by minimizing the influence of confounding conscious factors. Furthermore, attentional bias of smokers in unawareness state was negatively correlated with their cigarette dependence levels, while their pre-test cigarette craving levels was positively correlated with their attnetional bias in the visible condition. This pair of correlations further demonstrated the advantages of unawareness state in disclosing stable dependence states, therefore supporting the effectiveness of the paradigm used in this study. Another interesting finding of Experiment 1 is that non-smokers also showed attentional bias in the visible condition. To exclude the possibility that the attentional bias found in experiment 1 was task-specific, experiment 2 adapted the most commonly-used visual dot probe task with smoking scenes as in relevant reference. The result in experiment 1 was well replicated, i.e., nonsmokers in experiment 2 also showed significant attentional bias to smoking-related stimuli, We interpenetrate this interesting finding as an effect of environmental influence, as the participants of the current study live in a highly smoking-exposed and smoking-encouraged environment, which is quite different with the participants of studies reported in the literature. A series of questionnaires and scales administered in the current study indeed show that most smokers smoked due to influence of the environment. They also acknowledged that smoking as an important media of social communication in China, and even considered that away from the smoking environment would effectively help them to quit. The current study also found that the disgust level towards cigarette pictures and smoking-related scenes of non-smokers was positively correlated with their attnentional bias in the visible condition of experiment 1. It is likely that in a highly smoking-encouraged environment, the remaining few on-smokers have severe disgust to cigarettes and smoking scenes; and their attentional bias might be caused by disgust avoidance. In conclusion, the current study represents the first study showing the existence of unaware attentional bias to smoking related stimuli in cigarette smokers by applying the interocular suppression paradigm, providing a reference to study of dependence of other drugs. The current study also found that our non-smoking participants also showed attentional bias to smoking related stimuli, which may be due to the possible influence of highly smoking-exposed environment of our participants.