Breeding value accuracy estimates for growth traits using random regression and multi-trait models in Nelore cattle

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Multi-trait and random regression mature weight heritability and breeding value estimates in Nelore cattle

Mature weight breeding values were estimated using a multi-trait animal model (MM) and a random regression animal model (RRM). Data consisted of 82 064 weight records from 8 145 animals, recorded from birth to eight years of age. Weights at standard ages were considered in the MM. All models included contemporary groups as fixed effects, and age of dam (linear and quadratic effects) and animal age as covariates. In the RRM, mean trends were modelled through a cubic regression on orthogonal polynomials of animal age and genetic maternal and direct and maternal permanent environmental effects were also included as random. Legendre polynomials of orders 4, 3, 6 and 3 were used for animal and maternal genetic and permanent environmental effects, respectively, considering five classes of residual variances. Mature weight (five years) direct heritability estimates were 0.35 (MM) and 0.38 (RRM). Rank correlation between sires' breeding values estimated by MM and RRM was 0.82. However, selecting the top 2% (12) or 10% (62) of the young sires based on the MM predicted breeding values, respectively 71% and 80% of the same sires would be selected if RRM estimates were used instead. The RRM modelled the changes in the (co)variances with age adequately and larger breeding value accuracies can be expected using this model. © South African Society for Animal Science.

Modelos para estimação de componentes de (co)variância para produção de leite no dia do controle de vacas da raça Holandesa

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Modelos de regressão aleatória para a estimação de parâmetros genéticos da produção e constituintes do leite de búfalas

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Special functions of Weyl groups and their continuous and discrete orthogonality

Cette thèse s'intéresse à l'étude des propriétés et applications de quatre familles des fonctions spéciales associées aux groupes de Weyl et dénotées $C$, $S$, $S^s$ et $S^l$. Ces fonctions peuvent être vues comme des généralisations des polynômes de Tchebyshev. Elles sont en lien avec des polynômes orthogonaux à plusieurs variables associés aux algèbres de Lie simples, par exemple les polynômes de Jacobi et de Macdonald. Elles ont plusieurs propriétés remarquables, dont l'orthogonalité continue et discrète. En particulier, il est prouvé dans la présente thèse que les fonctions $S^s$ et $S^l$ caractérisées par certains paramètres sont mutuellement orthogonales par rapport à une mesure discrète. Leur orthogonalité discrète permet de déduire deux types de transformées discrètes analogues aux transformées de Fourier pour chaque algèbre de Lie simple avec racines des longueurs différentes. Comme les polynômes de Tchebyshev, ces quatre familles des fonctions ont des applications en analyse numérique. On obtient dans cette thèse quelques formules de <>, pour des fonctions de plusieurs variables, en liaison avec les fonctions $C$, $S^s$ et $S^l$. On fournit également une description complète des transformées en cosinus discrètes de types V--VIII à $n$ dimensions en employant les fonctions spéciales associées aux algèbres de Lie simples $B_n$ et $C_n$, appelées cosinus antisymétriques et symétriques. Enfin, on étudie quatre familles de polynômes orthogonaux à plusieurs variables, analogues aux polynômes de Tchebyshev, introduits en utilisant les cosinus (anti)symétriques.

On Solutions of Holonomic Divided-Difference Equations on Non-Uniform Lattices

The main aim of this paper is the development of suitable bases (replacing the power basis x^n (n\in\IN_\le 0) which enable the direct series representation of orthogonal polynomial systems on non-uniform lattices (quadratic lattices of a discrete or a q-discrete variable). We present two bases of this type, the first of which allows to write solutions of arbitrary divided-difference equations in terms of series representations extending results given in [16] for the q-case. Furthermore it enables the representation of the Stieltjes function which can be used to prove the equivalence between the Pearson equation for a given linear functional and the Riccati equation for the formal Stieltjes function. If the Askey-Wilson polynomials are written in terms of this basis, however, the coefficients turn out to be not q-hypergeometric. Therefore, we present a second basis, which shares several relevant properties with the first one. This basis enables to generate the defining representation of the Askey-Wilson polynomials directly from their divided-difference equation. For this purpose the divided-difference equation must be rewritten in terms of suitable divided-difference operators developed in [5], see also [6].

A class of hypergeometric polynomials with zeros on the unit circle: Extremal and orthogonal properties and quadrature formulas

The class of hypergeometric polynomials F12(-m,b;b+b̄;1-z) with respect to the parameter b=λ+iη, where λ>0, are known to have all their zeros simple and exactly on the unit circle |z|=1. In this note we look at some of the associated extremal and orthogonal properties on the unit circle and on the interval (-1,1). We also give the associated Gaussian type quadrature formulas. © 2012 IMACS.

On computational aspects of discrete Sobolev inner products on the unit circle

In this paper, we show how to compute in O(n2) steps the Fourier coefficients associated with the Gelfand-Levitan approach for discrete Sobolev orthogonal polynomials on the unit circle when the support of the discrete component involving derivatives is located outside the closed unit disk. As a consequence, we deduce the outer relative asymptotics of these polynomials in terms of those associated with the original orthogonality measure. Moreover, we show how to recover the discrete part of our Sobolev inner product. © 2013 Elsevier Inc. All rights reserved.

A finite class of orthogonal functions generated by Routh-Romanovski polynomials

It is known that some orthogonal systems are mapped onto other orthogonal systems by the Fourier transform. In this article we introduce a finite class of orthogonal functions, which is the Fourier transform of Routh-Romanovski orthogonal polynomials, and obtain its orthogonality relation using Parseval identity.

Analysis of the free vibration of rectangular plates with central cut-outs using the discrete Ritz method

We present an analysis of the free vibration of plates with internal discontinuities due to central cut-outs. A numerical formulation for a basic L-shaped element which is divided into appropriate sub-domains that are dependent upon the location of the cut-out is used as the basic building element. Trial functions formed to satisfy certain boundary conditions are employed to define the transverse deflection of each sub-domain. Mathematical treatments in terms of the continuities in displacement, slope, moment, and higher derivatives between the adjacent sub-domains are enforced at the interconnecting edges. The energy functional results, from the proper assembly of the coupled strain and kinetic energy contributions of each sub-domain, are minimized via the Ritz procedure to extract the vibration frequencies and. mode shapes of the plates. The procedures are demonstrated by considering plates with central cut-outs that are subjected to two types of boundary conditions. (C) 2003 Elsevier Ltd. All rights reserved.

Calculation of product state distributions from resonance decay via Lanczos subspace filter diagonalization: Application to HO2

Resonance phenomena associated with the unimolecular dissociation of HO2 have been investigated quantum-mechanically by the Lanczos homogeneous filter diagonalization (LHFD) method. The calculated resonance energies, rates (widths), and product state distributions are compared to results from an autocorrelation function-based filter diagonalization (ACFFD) method. For calculating resonance wave functions via ACFFD, an analytical expression for the expansion coefficients of the modified Chebyshev polynomials is introduced. Both dissociation rates and product state distributions of O-2 show strong fluctuations, indicating the dissociation of HO2 is essentially irregular. (C) 2001 American Institute of Physics.

Nonlinear principal and canonical directions from continuous extensions of multidimensional scaling

A continuous random variable is expanded as a sum of a sequence of uncorrelated random variables. These variables are principal dimensions in continuous scaling on a distance function, as an extension of classic scaling on a distance matrix. For a particular distance, these dimensions are principal components. Then some properties are studied and an inequality is obtained. Diagonal expansions are considered from the same continuous scaling point of view, by means of the chi-square distance. The geometric dimension of a bivariate distribution is defined and illustrated with copulas. It is shown that the dimension can have the power of continuum.

Study on period search methods of variable stars: Application to ASAS and CRTS databases

Study on variable stars is an important topic of modern astrophysics. After the invention of powerful telescopes and high resolving powered CCD’s, the variable star data is accumulating in the order of peta-bytes. The huge amount of data need lot of automated methods as well as human experts. This thesis is devoted to the data analysis on variable star’s astronomical time series data and hence belong to the inter-disciplinary topic, Astrostatistics. For an observer on earth, stars that have a change in apparent brightness over time are called variable stars. The variation in brightness may be regular (periodic), quasi periodic (semi-periodic) or irregular manner (aperiodic) and are caused by various reasons. In some cases, the variation is due to some internal thermo-nuclear processes, which are generally known as intrinsic vari- ables and in some other cases, it is due to some external processes, like eclipse or rotation, which are known as extrinsic variables. Intrinsic variables can be further grouped into pulsating variables, eruptive variables and flare stars. Extrinsic variables are grouped into eclipsing binary stars and chromospheri- cal stars. Pulsating variables can again classified into Cepheid, RR Lyrae, RV Tauri, Delta Scuti, Mira etc. The eruptive or cataclysmic variables are novae, supernovae, etc., which rarely occurs and are not periodic phenomena. Most of the other variations are periodic in nature. Variable stars can be observed through many ways such as photometry, spectrophotometry and spectroscopy. The sequence of photometric observa- xiv tions on variable stars produces time series data, which contains time, magni- tude and error. The plot between variable star’s apparent magnitude and time are known as light curve. If the time series data is folded on a period, the plot between apparent magnitude and phase is known as phased light curve. The unique shape of phased light curve is a characteristic of each type of variable star. One way to identify the type of variable star and to classify them is by visually looking at the phased light curve by an expert. For last several years, automated algorithms are used to classify a group of variable stars, with the help of computers. Research on variable stars can be divided into different stages like observa- tion, data reduction, data analysis, modeling and classification. The modeling on variable stars helps to determine the short-term and long-term behaviour and to construct theoretical models (for eg:- Wilson-Devinney model for eclips- ing binaries) and to derive stellar properties like mass, radius, luminosity, tem- perature, internal and external structure, chemical composition and evolution. The classification requires the determination of the basic parameters like pe- riod, amplitude and phase and also some other derived parameters. Out of these, period is the most important parameter since the wrong periods can lead to sparse light curves and misleading information. Time series analysis is a method of applying mathematical and statistical tests to data, to quantify the variation, understand the nature of time-varying phenomena, to gain physical understanding of the system and to predict future behavior of the system. Astronomical time series usually suffer from unevenly spaced time instants, varying error conditions and possibility of big gaps. This is due to daily varying daylight and the weather conditions for ground based observations and observations from space may suffer from the impact of cosmic ray particles. Many large scale astronomical surveys such as MACHO, OGLE, EROS, xv ROTSE, PLANET, Hipparcos, MISAO, NSVS, ASAS, Pan-STARRS, Ke- pler,ESA, Gaia, LSST, CRTS provide variable star’s time series data, even though their primary intention is not variable star observation. Center for Astrostatistics, Pennsylvania State University is established to help the astro- nomical community with the aid of statistical tools for harvesting and analysing archival data. Most of these surveys releases the data to the public for further analysis. There exist many period search algorithms through astronomical time se- ries analysis, which can be classified into parametric (assume some underlying distribution for data) and non-parametric (do not assume any statistical model like Gaussian etc.,) methods. Many of the parametric methods are based on variations of discrete Fourier transforms like Generalised Lomb-Scargle peri- odogram (GLSP) by Zechmeister(2009), Significant Spectrum (SigSpec) by Reegen(2007) etc. Non-parametric methods include Phase Dispersion Minimi- sation (PDM) by Stellingwerf(1978) and Cubic spline method by Akerlof(1994) etc. Even though most of the methods can be brought under automation, any of the method stated above could not fully recover the true periods. The wrong detection of period can be due to several reasons such as power leakage to other frequencies which is due to finite total interval, finite sampling interval and finite amount of data. Another problem is aliasing, which is due to the influence of regular sampling. Also spurious periods appear due to long gaps and power flow to harmonic frequencies is an inherent problem of Fourier methods. Hence obtaining the exact period of variable star from it’s time series data is still a difficult problem, in case of huge databases, when subjected to automation. As Matthew Templeton, AAVSO, states “Variable star data analysis is not always straightforward; large-scale, automated analysis design is non-trivial”. Derekas et al. 2007, Deb et.al. 2010 states “The processing of xvi huge amount of data in these databases is quite challenging, even when looking at seemingly small issues such as period determination and classification”. It will be beneficial for the variable star astronomical community, if basic parameters, such as period, amplitude and phase are obtained more accurately, when huge time series databases are subjected to automation. In the present thesis work, the theories of four popular period search methods are studied, the strength and weakness of these methods are evaluated by applying it on two survey databases and finally a modified form of cubic spline method is intro- duced to confirm the exact period of variable star. For the classification of new variable stars discovered and entering them in the “General Catalogue of Vari- able Stars” or other databases like “Variable Star Index“, the characteristics of the variability has to be quantified in term of variable star parameters.

Identifikation spezieller Funktionen, die durch Rodriguesformeln gegeben sind

Es ist allgemein bekannt, dass sich zwei gegebene Systeme spezieller Funktionen durch Angabe einer Rekursionsgleichung und entsprechend vieler Anfangswerte identifizieren lassen, denn computeralgebraisch betrachtet hat man damit eine Normalform vorliegen. Daher hat sich die interessante Forschungsfrage ergeben, Funktionensysteme zu identifizieren, die über ihre Rodriguesformel gegeben sind. Zieht man den in den 1990er Jahren gefundenen Zeilberger-Algorithmus für holonome Funktionenfamilien hinzu, kann die Rodriguesformel algorithmisch in eine Rekursionsgleichung überführt werden. Falls die Funktionenfamilie überdies hypergeometrisch ist, sogar laufzeiteffizient. Um den Zeilberger-Algorithmus überhaupt anwenden zu können, muss es gelingen, die Rodriguesformel in eine Summe umzuwandeln. Die vorliegende Arbeit beschreibt die Umwandlung einer Rodriguesformel in die genannte Normalform für den kontinuierlichen, den diskreten sowie den q-diskreten Fall vollständig. Das in Almkvist und Zeilberger (1990) angegebene Vorgehen im kontinuierlichen Fall, wo die in der Rodriguesformel auftauchende n-te Ableitung über die Cauchysche Integralformel in ein komplexes Integral überführt wird, zeigt sich im diskreten Fall nun dergestalt, dass die n-te Potenz des Vorwärtsdifferenzenoperators in eine Summenschreibweise überführt wird. Die Rekursionsgleichung aus dieser Summe zu generieren, ist dann mit dem diskreten Zeilberger-Algorithmus einfach. Im q-Fall wird dargestellt, wie Rekursionsgleichungen aus vier verschiedenen q-Rodriguesformeln gewonnen werden können, wobei zunächst die n-te Potenz der jeweiligen q-Operatoren in eine Summe überführt wird. Drei der vier Summenformeln waren bislang unbekannt. Sie wurden experimentell gefunden und per vollständiger Induktion bewiesen. Der q-Zeilberger-Algorithmus erzeugt anschließend aus diesen Summen die gewünschte Rekursionsgleichung. In der Praxis ist es sinnvoll, den schnellen Zeilberger-Algorithmus anzuwenden, der Rekursionsgleichungen für bestimmte Summen über hypergeometrische Terme ausgibt. Auf dieser Fassung des Algorithmus basierend wurden die Überlegungen in Maple realisiert. Es ist daher sinnvoll, dass alle hier aufgeführten Prozeduren, die aus kontinuierlichen, diskreten sowie q-diskreten Rodriguesformeln jeweils Rekursionsgleichungen erzeugen, an den hypergeometrischen Funktionenfamilien der klassischen orthogonalen Polynome, der klassischen diskreten orthogonalen Polynome und an der q-Hahn-Klasse des Askey-Wilson-Schemas vollständig getestet werden. Die Testergebnisse liegen tabellarisch vor. Ein bedeutendes Forschungsergebnis ist, dass mit der im q-Fall implementierten Prozedur zur Erzeugung einer Rekursionsgleichung aus der Rodriguesformel bewiesen werden konnte, dass die im Standardwerk von Koekoek/Lesky/Swarttouw(2010) angegebene Rodriguesformel der Stieltjes-Wigert-Polynome nicht korrekt ist. Die richtige Rodriguesformel wurde experimentell gefunden und mit den bereitgestellten Methoden bewiesen. Hervorzuheben bleibt, dass an Stelle von Rekursionsgleichungen analog Differential- bzw. Differenzengleichungen für die Identifikation erzeugt wurden. Wie gesagt gehört zu einer Normalform für eine holonome Funktionenfamilie die Angabe der Anfangswerte. Für den kontinuierlichen Fall wurden umfangreiche, in dieser Gestalt in der Literatur noch nie aufgeführte Anfangswertberechnungen vorgenommen. Im diskreten Fall musste für die Anfangswertberechnung zur Differenzengleichung der Petkovsek-van-Hoeij-Algorithmus hinzugezogen werden, um die hypergeometrischen Lösungen der resultierenden Rekursionsgleichungen zu bestimmen. Die Arbeit stellt zu Beginn den schnellen Zeilberger-Algorithmus in seiner kontinuierlichen, diskreten und q-diskreten Variante vor, der das Fundament für die weiteren Betrachtungen bildet. Dabei wird gebührend auf die Unterschiede zwischen q-Zeilberger-Algorithmus und diskretem Zeilberger-Algorithmus eingegangen. Bei der praktischen Umsetzung wird Bezug auf die in Maple umgesetzten Zeilberger-Implementationen aus Koepf(1998/2014) genommen. Die meisten der umgesetzten Prozeduren werden im Text dokumentiert. Somit wird ein vollständiges Paket an Algorithmen bereitgestellt, mit denen beispielsweise Formelsammlungen für hypergeometrische Funktionenfamilien überprüft werden können, deren Rodriguesformeln bekannt sind. Gleichzeitig kann in Zukunft für noch nicht erforschte hypergeometrische Funktionenklassen die beschreibende Rekursionsgleichung erzeugt werden, wenn die Rodriguesformel bekannt ist.

Discrete time representation of continuous time ARMA processes

This paper derives exact discrete time representations for data generated by a continuous time autoregressive moving average (ARMA) system with mixed stock and flow data. The representations for systems comprised entirely of stocks or of flows are also given. In each case the discrete time representations are shown to be of ARMA form, the orders depending on those of the continuous time system. Three examples and applications are also provided, two of which concern the stationary ARMA(2, 1) model with stock variables (with applications to sunspot data and a short-term interest rate) and one concerning the nonstationary ARMA(2, 1) model with a flow variable (with an application to U.S. nondurable consumers’ expenditure). In all three examples the presence of an MA(1) component in the continuous time system has a dramatic impact on eradicating unaccounted-for serial correlation that is present in the discrete time version of the ARMA(2, 0) specification, even though the form of the discrete time model is ARMA(2, 1) for both models.