Coral reef habitat maps derived from a high-spatial-resolution multi-spectral satellite image using object based image analysis

Coral reef maps at various spatial scales and extents are needed for mapping, monitoring, modelling, and management of these environments. High spatial resolution satellite imagery, pixel <10 m, integrated with field survey data and processed with various mapping approaches, can provide these maps. These approaches have been accurately applied to single reefs (10-100 km**2), covering one high spatial resolution scene from which a single thematic layer (e.g. benthic community) is mapped. This article demonstrates how a hierarchical mapping approach can be applied to coral reefs from individual reef to reef-system scales (10-1000 km**2) using object-based image classification of high spatial resolution images guided by ecological and geomorphological principles. The approach is demonstrated for three individual reefs (10-35 km**2) in Australia, Fiji, and Palau; and for three complex reef systems (300-600 km**2) one in the Solomon Islands and two in Fiji. Archived high spatial resolution images were pre-processed and mosaics were created for the reef systems. Georeferenced benthic photo transect surveys were used to acquire cover information. Field and image data were integrated using an object-based image analysis approach that resulted in a hierarchically structured classification. Objects were assigned class labels based on the dominant benthic cover type, or location-relevant ecological and geomorphological principles, or a combination thereof. This generated a hierarchical sequence of reef maps with an increasing complexity in benthic thematic information that included: 'reef', 'reef type', 'geomorphic zone', and 'benthic community'. The overall accuracy of the 'geomorphic zone' classification for each of the six study sites was 76-82% using 6-10 mapping categories. For 'benthic community' classification, the overall accuracy was 52-75% with individual reefs having 14-17 categories and reef systems 20-30 categories. We show that an object-based classification of high spatial resolution imagery, guided by field data and ecological and geomorphological principles, can produce consistent, accurate benthic maps at four hierarchical spatial scales for coral reefs of various sizes and complexities.

LAPMv2 - software for underwater large-area photo-mosaicking

LAPMv2 is a research software solution specifically developed to allow marine scientists to produce geo-referenced visual maps of the seafloor, known as mosaics, from a set of underwater images and navigation data. LAPMv2 has a graphical user interface that guides the user through the different steps of the mosaicking workflow. LAPMv2 runs on 64-bit Windows, MacOS X and Linux operating systems. There are two versions for each operating system: (1) the WEB-installers (lightweight but require an internet connection during the installation) and (2) the MCR installers (large files but can be installed on computer without internet-connection). The user manual explains how to install and start the program on the different operating systems. Go to http://www.lapm.eu.com for further information about the latest versions of LAPMv2.

Urban Ponds as an Aquatic Biodiversity Resource in Modified Landscapes

Urbanization is a global process contributing to the loss and fragmentation of natural habitats. Many studies have focused on the biological response of terrestrial taxa and habitats to urbanization. However, little is known regarding the consequences of urbanization on freshwater habitats, especially small lentic systems. In this study we examined aquatic macroinvertebrate diversity (family and species level) and variation in community composition between 240 urban and 782 non-urban ponds distributed across the UK. Contrary to predictions, urban ponds supported similar numbers of invertebrate species and families compared to non-urban ponds. Similar gamma diversity was found between the two groups at both family and species taxonomic levels. The biological communities of urban ponds were markedly different to those of non-urban ponds and the variability in urban pond community composition was greater than that in non-urban ponds, contrary to previous work showing homogenisation of communities in urban areas. Positive spatial autocorrelation was recorded for urban and non-urban ponds at 0-50 km (distance between pond study sites) and negative spatial autocorrelation was observed at 100-150 km, and was stronger in urban ponds in both cases. Ponds do not follow the same ecological patterns as terrestrial and lotic habitats (reduced taxonomic richness) in urban environments; in contrast they support high taxonomic richness and contribute significantly to regional faunal diversity. Individual cities are complex structural mosaics which evolve over long periods of time and are managed in diverse ways, promoting the development of a wide-range of environmental conditions and habitat niches in urban ponds which can promote greater heterogeneity between pond communities at larger scales. Ponds provide an opportunity for managers and environmental regulators to conserve and enhance freshwater biodiversity in urbanized landscapes whilst also facilitating key ecosystem services including storm water storage and water treatment.

Caracterização geológica e geofísica da área do porto da Figueira da Foz

No âmbito de um projeto realizado para a Administração Portuária do Porto da Figueira da Foz, foram recolhidos dados geofísicos no offshore da costa da Figueira da Foz, utilizando um sistema combinado de sonar de varrimento lateral e de sísmica de alta resolução com o objetivo de compreender a distribuição de sedimentos ao longo do fundo marinho e assim entender melhor a sua origem. Os dados de varrimento lateral foram processados, analisados e representados em mosaicos recorrendo ao software integrado TRINTON Prespective. Foram colhidas 10 amostras de sedimentos de fundo que foram analisadas do ponto de vista granulométrico e que foram usadas para a calibração dos mosaicos do sonar de varrimento lateral de modo a produzir um mapa semi-quantitativo de classificação dos sedimentos de fundo. Os dados de reflexão sísmica foram processados e analisados através dos softwares SPW e RadExPro. Os mapas de sonar de varrimento lateral produzidos (mosaicos) mostram uma relação entre o tamanho de grão e composição dos depósitos de plataforma interna e os processos geológicos que ocorrem na zona costeira adjacente. Também se verifica uma relação entre a orientação da costa e a sua consequente exposição às ondas incidentes, e como isso afeta e altera a distribuição do tamanho grão. Neste contexto, a interpretação combinada dos mosaicos do sonar de varrimento lateral com os dados de granulometria e a batimetria dos sedimentos permitiram uma cartografia interpretativa detalhada da morfologia do mar, uma melhor compreensão do controlo da linha costeira na propagação das ondas e correntes e, por conseguinte, na transferência de sedimento no litoral. Os dados de sísmica permitem ainda verificar a espessura das várias camadas geológicas em profundidade.

Using augmented state Kalman filter to localize multi autonomous underwater vehicles

The present paper describes a system for the construction of visual maps ("mosaics") and motion estimation for a set of AUVs (Autonomous Underwater Vehicles). Robots are equipped with down-looking camera which is used to estimate their motion with respect to the seafloor and built an online mosaic. As the mosaic increases in size, a systematic bias is introduced in its alignment, resulting in an erroneous output. The theoretical concepts associated with the use of an Augmented State Kalman Filter (ASKF) were applied to optimally estimate both visual map and the fleet position.

Aprendizaje basado en problemas, ABP : una propuesta para transformar la enseñanza-aprendizaje de las aplicaciones de la trigonometría en la solución de triángulos en el grado 10º

El estudio tuvo como propósito determinar la efectividad relativa del ABP, comparado con el método tradicional para desarrollar habilidades de resolución de problemas en el aprendizaje de las aplicaciones de la solución de triángulos en el grado 10º de la Institución Educativa El Progreso, de El Carmen de Viboral, Antioquia. La enseñanza-aprendizaje de las matemáticas sustentadas con la estrategia didáctica Aprendizaje Basado en Problemas permite a los estudiantes y docentes aproximarse al conocimiento de una manera similar a como lo hacen los científicos; el primer paso es una situación de duda, perplejidad del estudiante provocada por la Situación Problema planteada por el docente, el segundo un momento de “sugerencias” en las que la mente salta hacia adelante en busca de una posible solución (Dewey, 1933, p. 102). El tercer paso “intelectualización” de la dificultad que se ha percibido para convertirlo en un problema que debe solucionarse (Dewey, 1933, p. 103). La cuarta es “la idea conductora o hipótesis”, las cuales se basan en la formulación de explicaciones sugeridas o soluciones posibles (Dewey, 1933, p. 104). El quinto paso sería el “razonamiento”, consiste en la elaboración racional de una idea que se va desarrollando de acuerdo a las habilidades de cada persona (Dewey, 1933, p. 105). El paso final es la “comprobación de hipótesis” en situaciones reales. Este proceso se evidenció a través de cuatro Situaciones-Problema enfocadas desde un contexto auténtico “la remodelación del parque principal de El Carmen de Viboral” con el objetivo de motivar a los estudiantes para el aprendizaje de algunos conceptos matemáticos y el desarrollo de habilidades de resolución de problemas. La metodología de la investigación fue un diseño cuasi-experimental con grupo experimental compuesto por 38 estudiantes del grado 10º2 y grupo control con 37 estudiantes del grado 10º1. Se empleó como técnica de recolección de la información una prueba pre-test antes del tratamiento y una prueba post-test que se aplicó después del tratamiento a ambos grupos; se aplicó también una escala de satisfacción de los estudiantes con la metodología tradicional en ambos grupos y una escala de satisfacción con la estrategia didáctica ABP sólo al grupo experimental; la observación directa, y el portafolio que evidenciaba todas las construcciones de los estudiantes. La aplicación de la estrategia didáctica experimental se aplicó durante 4 meses, con una intensidad horaria de cuatro horas semanales, tiempo durante el cual se implementaron las cuatro Situaciones-Problema. Se concluyó entre otros aspectos que el 86,5% de los estudiantes encuentran las clases de matemáticas como interesantes, contextualizadas, aplicables y significativas, mientras que antes del tratamiento sólo el 44,4% se encontraba satisfecho con las clases de matemáticas, con una diferencia en cambio de actitud de 42,1% frente a las clases de matemáticas con la metodología tradicional. En el análisis comparativo de adquisición de competencias específicas se demuestra que el grupo experimental demostró ser matemáticamente más competente con respecto al grupo control en todas las competencias evaluadas: capacidad de modelación, inductiva, comunicativa y habilidad procedimental. Además, el proyecto de investigación tuvo un valor agregado: 10 estudiantes tuvieron la oportunidad de conocer más sobre su cultura ceramista mediante el diseño y construcción de mosaicos que los ofreció la casa de la cultura en forma gratuita.

Urban ponds as an aquatic biodiversity resource in modified landscapes.

Urbanization is a global process contributing to the loss and fragmentation of natural habitats. Many studies have focused on the biological response of terrestrial taxa and habitats to urbanization. However, little is known regarding the consequences of urbanization on freshwater habitats, especially small lentic systems. In this study we examined aquatic macroinvertebrate diversity (family and species level) and variation in community composition between 240 urban and 784 non-urban ponds distributed across the UK. Contrary to predictions, urban ponds supported similar numbers of invertebrate species and families compared to non-urban ponds. Similar gamma diversity was found between the two groups at a family level, and while at a species level gamma diversity was higher in non-urban ponds, this difference was not statistically significant. The biological communities of urban ponds were markedly different to those of non-urban ponds and the variability in urban pond community composition was greater than that in non-urban ponds, contrary to previous work showing homogenisation of communities in urban areas. Positive spatial autocorrelation was recorded for urban and non-urban ponds at 0-50 km (distance between pond study sites) and negative spatial autocorrelation was observed at 100-150 km, and was stronger in urban ponds in both cases. Ponds do not follow the same ecological patterns as terrestrial and lotic habitats (reduced taxonomic richness) in urban environments; in contrast they support high taxonomic richness and contribute significantly to regional faunal diversity. Individual cities are complex structural mosaics which evolve over long periods of time and are managed in diverse ways, promoting the development of a wide-range of environmental conditions and habitat niches in urban ponds which can promote greater heterogeneity between pond communities at larger scales. Ponds provide an opportunity for managers and environmental regulators to conserve and enhance freshwater biodiversity in urbanized landscapes whilst also facilitating key ecosystem services including storm water storage and water treatment.

Typologies and spatialization of agricultural production systems in Rondônia, Brazil: linking land use, socioeconomics and territorial configuration.

The current Amazon landscape consists of heterogeneous mosaics formed by interactions between the original forest and productive activities. Recognizing and quantifying the characteristics of these landscapes is essential for understanding agricultural production chains, assessing the impact of policies, and in planning future actions. Our main objective was to construct the regionalization of agricultural production for Rondônia State (Brazilian Amazon) at the municipal level. We adopted a decision tree approach, using land use maps derived from remote sensing data (PRODES and TerraClass) combined with socioeconomic data. The decision trees allowed us to allocate municipalities to one of five agricultural production systems: (i) coexistence of livestock production and intensive agriculture; (ii) semi-intensive beef and milk production; (iii) semi-intensive beef production; (iv) intensive beef and milk production, and; (v) intensive beef production. These production systems are, respectively, linked to mechanized agriculture (i), traditional cattle farming with low management, with (ii) or without (iii) a significant presence of dairy farming, and to more intensive livestock farming with (iv) or without (v) a significant presence of dairy farming. The municipalities and associated production systems were then characterized using a wide variety of quantitative metrics grouped into four dimensions: (i) agricultural production; (ii) economics; (iii) territorial configuration, and; (iv) social characteristics. We found that production systems linked to mechanized agriculture predominate in the south of the state, while intensive farming is mainly found in the center of the state. Semi-intensive livestock farming is mainly located close to the southwest frontier and in the north of the state, where human occupation of the territory is not fully consolidated. This distributional pattern reflects the origins of the agricultural production system of Rondônia. Moreover, the characterization of the production systems provides insights into the pattern of occupation of the Amazon and the socioeconomic consequences of continuing agricultural expansion.

Characterization of plasmids in a human clinical strain of Lactococcus garvieae

The present work describes the molecular characterization of five circular plasmids found in the human clinical strain Lactococcus garvieae 21881. The plasmids were designated pGL1-pGL5, with molecular sizes of 4,536 bp, 4,572 bp, 12,948 bp, 14,006 bp and 68,798 bp, respectively. Based on detailed sequence analysis, some of these plasmids appear to be mosaics composed of DNA obtained by modular exchange between different species of lactic acid bacteria. Based on sequence data and the derived presence of certain genes and proteins, the plasmid pGL2 appears to replicate via a rolling-circle mechanism, while the other four plasmids appear to belong to the group of lactococcal theta-type replicons. The plasmids pGL1, pGL2 and pGL5 encode putative proteins related with bacteriocin synthesis and bacteriocin secretion and immunity. The plasmid pGL5 harbors genes (txn, orf5 and orf25) encoding proteins that could be considered putative virulence factors. The gene txn encodes a protein with an enzymatic domain corresponding to the family actin-ADP-ribosyltransferases toxins, which are known to play a key role in pathogenesis of a variety of bacterial pathogens. The genes orf5 and orf25 encode two putative surface proteins containing the cell wall-sorting motif LPXTG, with mucin-binding and collagen-binding protein domains, respectively. These proteins could be involved in the adherence of L. garvieae to mucus from the intestine, facilitating further interaction with intestinal epithelial cells and to collagenous tissues such as the collagen-rich heart valves. To our knowledge, this is the first report on the characterization of plasmids in a human clinical strain of this pathogen.

ANÁLISIS DE TENDENCIAS HIDROCLIMÁTICAS DE DOS CUENCAS REPRESENTATIVAS DE ISLA DE PUERTO RICO

El agua junto a las variaciones climáticas, encabezan discursos políticos y científicos globales en los que resurgen los debates sobre los conflictos acerca de este recurso, la geopolítica del agua, la gestión, la contaminación y la polución. Ante este panorama el IPCC (Panel Intergubernamental del Cambio Climático), la Organización Mundial de Meteorología (OMM),el Programa de la Naciones Unidas para el Medio Ambiente (PNUMA) y distintas organizaciones medioambientales hanenfocado sus intereses científicos en estudios en los cuales se utilicen indicadores hidroclimáticos. En este contexto, este artículo analiza la evolución hidroclimática reciente en dos cuencas principales de la isla de Puerto Rico, utilizando como indicadores las temperaturas, las precipitaciones y los caudales de distintas estaciones de NOAA y el USGS. Inicialmente analizamos cada estación individualmente y luego se hizo un análisis conjunto de la cuenca. Con los resultados obtenidos,en ninguna de las cuencas se pudo establecer tendencias claras en cuanto a la precipitación total anual. Aunque algunas estaciones mostraron tendencias positivas y otras regresivas, ninguna alcanzó valores estadísticamente significativos que permita rechazar la hipótesis nula de no tendencia. Nuestro análisis indica también que en una cuenca la temperatura media anual mostró un ligero aumento, mientras que en la otra la temperatura manifestó descendió. Por otro lado, el volumen de agua anual que discurre por las cuencas ha disminuido en ambos ríos donde se pudo rechazar la hipótesis nula de no tendencia con el análisis de Mann-Kendall. No obstante, existen otros factores que no fueron objeto de estudio en este análisis y que tienen impactos sobre los recursos hídricos, así como los distintos mosaicos paisajísticos que componen una cuenca hidrográfica.Palabras Claves: recursos hídricos, tendencias hidroclimáticas, cambio climático.ABSTRACTToday, water resources and climatic oscillations dominate all political and scientific discourses where the principal debate is focused on water management, water pollution and the geopolitics of this resource. Against this background, the IPCC (Intergovernmental Panel for Climate Change), WMO(World Meteorology Organization), the United Nations Environmental Program (UNEP) and other environmental organizations have focused their scientific research on hydro-climatic evolution. In this context, this article examines recent developments in hydro-climatic evolution on two mainrivers in Puerto Rico, using temperature, rainfall, stream-flow and discharge data from NOAA climatic stations and USGS hydrological stations. Initially, we analyze data from each individual station and then make an integrated analysis of the basins. With the obtained results, in none of the basins was it possible to establish clear trends as to total annual precipitation. Though some stations showed positive trends and others regressive, none reached statistically significant values.Our analysis also indicates that in one basin the annual average temperature showed a slight increase, whereas in the other basin a temperature decrease was confirmed. On the other hand, the volume of annual discharge from both rivers showed a decrease. However, there are other factors that were not considered in this analysis, such as land use, that impact water resources and the various landscape mosaics comprising a watershed.Key Words: water resources, hydro-climatic evolution, climate change

CORREDORES ECOLÓGICOS DA MATA ATLÂNTICA: VISÃO INTEGRADORA DO PLANEJAMENTO TERRITORIAL NO CONTÍNUO DE PARANAPIACABA -ESTADO DE SÃO PAULO - BRASIL

La visión bioregional de la conservación es reciente en Brasil. El planeamiento de mosaicos de las áreas protegidas con las intervenciones previstas en la zona tapón es un alternativa para corregir los dibujos actuales de áreas de protección. Lo Continuum Ecológico de Paranapicaba en el estado de Sâo Paulo (Brasil) se puede considerar uno de los corredores restantes más importantes de Mata Atlântica, reducidos hoy solamente a 7.3% de su extensión original. El Continuum Ecológico de Paranapiacaba tiene un alto nivel de biodiversidad. Se caracteriza por la vegetación que presenta gran diversidad estructural, y por lo tanto, así como  la presencia de  las  especie-llaves  endémicas, que  requieren  los  esfuerzos  efcientes para su conservación. Las estrategias que vienen siendo adoptados por  los parceiros de  la conservación buscan demostrar que es posible construir las ofertas adecuadas del uso y de la exploración sostenible de los recursos naturales. El empalme de algunas iniciativas socioambientales con el mosaico de las unidades de conservación, busca una “buena vecindad” a las unidades de la conservación que se hallan en el área-núcleo del Continuum. Palabras clave: Mata Atlântica, bosque lluvioso, buffer zone, conservación, áreas protegidas Abstract The bioregional vision of the conservation is recent in Brazil. The planning of mosaics of areas protected with interventions planned in the buffer zone is an alternative to correct the current drawings of Protecting Areas. The ecological Continuum of Paranapicaba in  the State of São Paulo  (Brazil) can be considered one of  the most  important  remaining corridors of Atlantic Rainforest, today reduced only 7.3% of its original extension. High level of biodiversity  is characterized by forest vegetation  that presents great structural diversity, and consequently, as well as presence of endemic species-keys, that require effcient efforts for its conservation. The strategies that come being adopted for partners of the conservation search to demonstrate that it is possible to construct to adequate proposals of use and sustainable exploration of the natural resources. The joint of the some social-environmental initiatives with the mosaic of Units of Conservation, searchs to construct a “good neighborhood” to the Units of Conservation that if fnd in the area-nucleus of Continuum.Key words: Mata Atlântica, rainforest, buffer zone, conservation, áreas protegidas