Algoritmos de agrupamento aplicados a dados de expressão gênica de câncer: um estudo comparativo

The use of clustering methods for the discovery of cancer subtypes has drawn a great deal of attention in the scientific community. While bioinformaticians have proposed new clustering methods that take advantage of characteristics of the gene expression data, the medical community has a preference for using classic clustering methods. There have been no studies thus far performing a large-scale evaluation of different clustering methods in this context. This work presents the first large-scale analysis of seven different clustering methods and four proximity measures for the analysis of 35 cancer gene expression data sets. Results reveal that the finite mixture of Gaussians, followed closely by k-means, exhibited the best performance in terms of recovering the true structure of the data sets. These methods also exhibited, on average, the smallest difference between the actual number of classes in the data sets and the best number of clusters as indicated by our validation criteria. Furthermore, hierarchical methods, which have been widely used by the medical community, exhibited a poorer recovery performance than that of the other methods evaluated. Moreover, as a stable basis for the assessment and comparison of different clustering methods for cancer gene expression data, this study provides a common group of data sets (benchmark data sets) to be shared among researchers and used for comparisons with new methods

Apoiando a construção de testes de aceitação automatizados a partir da especificação de requisitos

Automation has become increasingly necessary during the software test process due to the high cost and time associated with such activity. Some tools have been proposed to automate the execution of Acceptance Tests in Web applications. However, many of them have important limitations such as the strong dependence on the structure of the HTML pages and the need of manual valuing of the test cases. In this work, we present a language for specifying acceptance test scenarios for Web applications called IFL4TCG and a tool that allows the generation of test cases from these scenarios. The proposed language supports the criterion of Equivalence Classes Partition and the tool allows the generation of test cases that meet different combination strategies (i.e., Each-Choice, Base-Choice and All Combinations). In order to evaluate the effectiveness of the proposed solution, we used the language and the associated tool for designing and executing Acceptance Tests on a module of Sistema Unificado de Administração Pública (SUAP) of Instituto Federal Rio Grande do Norte (IFRN). Four Systems Analysts and one Computer Technician, which work as developers of the that system, participated in the evaluation. Preliminary results showed that IFL4TCG can actually help to detect defects in Web applications

Termodinâmica de um gás de fótons no contexto de eletrodinâmicas não-lineares

The objective of this dissertation is the development of a general formalism to analyze the thermodynamical properties of a photon gas under the context of nonlinear electrodynamics (NLED). To this end it is obtained, through the systematic analysis of Maxwell s electromagnetism (EM) properties, the general dependence of the Lagrangian that describes this kind of theories. From this Lagrangian and in the background of classical field theory, we derive the general dispersion relation that photons must obey in terms of a background field and the NLED properties. It is important to note that, in order to achieve this result, an aproximation has been made in order to allow the separation of the total electromagnetic field into a strong background electromagnetic field and a perturbation. Once the dispersion relation is in hand, the usual Bose-Einstein statistical procedure is followed through which the thermodynamical properties, energy density and pressure relations are obtained. An important result of this work is the fact that equation of state remains identical to the one obtained under EM. Then, two examples are made where the thermodynamic properties are explicitly derived in the context of two NLED, Born-Infelds and a quadratic approximation. The choice of the first one is due to the vast appearance in literature and, the second one, because it is a first order approximation of a large class of NLED. Ultimately, both are chosen because of their simplicity. Finally, the results are compared to EM and interpreted, suggesting possible tests to verify the internal consistency of NLED and motivating further developement into the formalism s quantum case

Concordance between macroinvertebrate communities and the typological classification of white and clear-water streams in Western Brazilian Amazonia

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Estimativa da irradiação total sobre uma superfície inclinada a partir da irradiação global na horizontal

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Massa das sementes de Tecoma stans L. Juss. ex Kunth (Bignoniaceae): efeitos na emergência e desenvolvimento de suas plântulas no sol e na sombra

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Crescimento, acúmulo e distribuição de matéria seca em cultivares de batata na safra de inverno

O objetivo deste trabalho foi avaliar o crescimento, o acúmulo e a distribuição de matéria seca (MS) nas cultivares de batata (Solanum tuberosum) Ágata, Asterix, Atlantic, Markies e Mondial, durante a safra de inverno. O experimento foi conduzido de junho a outubro de 2008, no munícipio de Itaí, SP. Utilizou-se o delineamento experimental de blocos ao acaso, em parcelas subdivididas, com quatro repetições. As parcelas foram constituídas pelas cultivares, e as subparcelas por épocas de coletas de plantas para avaliação: no plantio e a cada sete dias após a emergência. Todas as cultivares têm crescimento lento até o início da fase de enchimento de tubérculos. Porém, as cultivares Asterix, Atlantic e Markies são mais precoces do que a Mondial no estabelecimento de taxas máximas de acúmulo de matéria seca. As cultivares Asterix e Mondial apresentam maior número de folhas por planta, produtividade de tubérculos, taxa de acúmulo e produção de MS, mas a cultivar Mondial é menos eficiente na alocação de MS nos tubérculos que as demais cultivares. As cultivares com maior taxa máxima de acúmulo produzem maior quantidade de MS, mesmo apresentando menor período de duração da taxa máxima de acúmulo.

Interceptação das chuvas em um fragmento de floresta da Mata Atlântica na Bacia do Prata, Recife, PE

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Balanço do nitrogênio da uréia (15N) no sistema solo-planta na implantação da semeadura direta na cultura do milho

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

RESÍDUOS DE FENITROTION em FRUTOS E FOLHAS DETOMATEIRO (Lycopersicon esculentum Mill) ESTAQUEADO

Estudou-se o comportamento dos resíduos de fenitrotion em frutos e folhas de tomateiro estaqueado, através de cromatografia gasosa. O experimento de campo foi instalado quando as plantas tinham 90 dias após o transplante das mudas, e constou de quatro tratamentos: (1) uma aplicação de fenitrotion em dosagem simples, de 100 g i.a./100 litros de água, (2) uma aplicação em dosagem dobrada, de 200 g i.a./100 litros de água, (3) quatro aplicações espaçadas de sete dias, na dosagem simples e (4) testemunha. As amostras de fruto e folha foram colhidas um dia antes da aplicação (-1) e aos zero , 1, 2, 3, 5, 7 e 14 dias após. Basicamente, a metododogia para análises dos resíduos dos frutos e das folhas constou da extração com acetona e partição em clorofórmio; limpeza dos extratos em coluna de florisil (no caso de folhas) e eluição procedida com benzeno. As determinações quantitativas foram feitas por cromatografia gasosa, usando-se detector fotométrico de chama com filtro específico para fósforo. Os resíduos nas folhas foram sempre maiores do que os dos frutos (cerca de 80 vezes, em média) durante todo o período de colheita das amostras. Os valores de meia-vida de degradação de fenitrotion em frutos e folhas foram: 1,6 a 1,9 e 0,7 a 0,8 dia, respectivamente, mostrando uma diminuição mais rápida dos resíduos em folhas. As meias-vidas de persistência foram semelhantes para os dois substratos: 4,2 a 7,3 e 5,6 a 6,2 dias, respectivamente. Os resíduos encontrados nos frutos logo após a aplicação, foram menores que a tolerância oficial (0,5 ppm) para os tratamentos que utilizaram 100 g i.a./100 litros em uma ou quatro pulverizações espaçadas de sete dias. Uma única aplicação de 200 g i.a./100 litros resultou em resíduos menores que 0,5 ppm, desde um dia após a aplicação.

Resíduos de fentoato em tomate

The objective of the present research was to study the degradation and the persistence of phenthoate (Elsan 50 CE) residues in tomato fruits. The experiment was set in a tomato field located in Mombuca, State of São Paulo, Brazil, after 45 days from seedlings transplantation. Dosages of 600 (A), 800 (B), 1200 (C) and 1600 g a.i./ha (D) were sprayed at the beginning of the ripening period of fruits. Samples of 15 fruits each were collected 1, 4, 10, 20 and 40 days after products spraying. The utilized procedure consisted of extraction with acetone and purification by partition with dichloromethane. The purified extract was concentrated and injected into a gas chromatograph equipped with alkaly flame ionization detector (AFID). The limits of detection were of 0,01 ppm for this product. The recovery percentage from fortified samples varied from 60 to 81%. The degradation and the persistence half-lives were 1 to 2 and 3 to 6 days for phenthoate, respectively.

Acúmulo e exportação de nutrientes em cenoura 'Forto'

In order to quantify the growth, accumulation and exportation of macronutrients by carrot 'Forto', and obtain equations that best represent them, it was conducted an experiment in the São Gotardo (MG), from May to September 2004. Samples were taken at 40, 50, 60, 70, 80, 90, 100, 110 and 120 days after sowing (DAS) to determine dry matter and accumulation of macronutrients in leaves and roots. At 40 DAS, five days after thinning, the plants had 0.18 g and 0.04 g in dry leaves (LDM) and of roots (RDM), respectively. From then, until 88 DAS, the partitioning of photoassimilates and accumulation of matter in the shoots were more pronounced. The RDM was low until 80 DAS, which corresponded to two thirds of the crop cycle, from when the amount of material allocated in this part of the plant had strong growth, surpassing, at 88 DAS, the amount of LDM. The nutrient accumulation was small in the first 60 DAS, coinciding with the period of lower dry matter accumulation. The order of decreasing macronutrient accumulation by the crop were: K > N > Ca > P > S > Mg, in the amounts of 906.7, 438, 155.46, 87.4, 58 and 37.63 mg plant-1, respectively. The root participated with 60.5% of the accumulation of N, 86.1% of P, 58% of K, 25.5% of Ca, 55.6% of Mg and 65.5% of S. Considering a population of 590,000 plants per hectare, the total quantity of nutrients by the crop of carrots was 258.3, 51.6, 534.8, 91.7, 22.2 and 34.2 kg N ha-1, P, K, Ca, Mg and S, respectively.

Estudos dos efeitos de carga e da hidrofobicidade na interação de peptídeos antimicrobianos e membranas modelo

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Avaliação da capacidade antioxidante de frações orgânicas do cogumelo Agaricus blazei Murril e purificação parcial de peroxidase e polifenoloxidase

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Crescimento e acúmulo de macronutrientes em cenoura Forto‟

Pós-graduação em Agronomia (Ciência do Solo) - FCAV