Global Self-Organization of the Cellular Metabolic Structure

Background: Over many years, it has been assumed that enzymes work either in an isolated way, or organized in small catalytic groups. Several studies performed using "metabolic networks models'' are helping to understand the degree of functional complexity that characterizes enzymatic dynamic systems. In a previous work, we used "dissipative metabolic networks'' (DMNs) to show that enzymes can present a self-organized global functional structure, in which several sets of enzymes are always in an active state, whereas the rest of molecular catalytic sets exhibit dynamics of on-off changing states. We suggested that this kind of global metabolic dynamics might be a genuine and universal functional configuration of the cellular metabolic structure, common to all living cells. Later, a different group has shown experimentally that this kind of functional structure does, indeed, exist in several microorganisms. Methodology/Principal Findings: Here we have analyzed around 2.500.000 different DMNs in order to investigate the underlying mechanism of this dynamic global configuration. The numerical analyses that we have performed show that this global configuration is an emergent property inherent to the cellular metabolic dynamics. Concretely, we have found that the existence of a high number of enzymatic subsystems belonging to the DMNs is the fundamental element for the spontaneous emergence of a functional reactive structure characterized by a metabolic core formed by several sets of enzymes always in an active state. Conclusions/Significance: This self-organized dynamic structure seems to be an intrinsic characteristic of metabolism, common to all living cellular organisms. To better understand cellular functionality, it will be crucial to structurally characterize these enzymatic self-organized global structures.

R6G单分子表面增强共振拉曼散射光谱探测研究

以共焦显微系统为平台，研究了不同浓度的R6G银溶胶的表面增强共振拉曼散射（SERRS）光谱，结果表明不同浓度溶液中的R6G分子表现出了不同的光谱特性。在浓度为10^-13mol·L^-1的R6G银溶胶中得到了R6G单分子的表面增强共振拉曼散射光谱，观察到了一些光谱非均匀变化现象，如谱色散、谱线的强度起伏、拉曼谱的偏振化以及分子的闪烁等，并对这些现象进行了分析，证明得到的是R6G单分子的SERRS光谱。文章还对单分子检测中的一些关键问题进行了分析与讨论，确定了单分子SERRS光谱检测的适当条件。

Bareback: reflexões sobre a normalização das condutas sexuais

Refletindo sobre homossexualidade, Aids e seus desdobramentos sociais e subjetivos nos últimos 30 anos, procuramos nesta dissertação discutir o fenômeno bareback sexo sem camisinha - nomeado nos Estados Unidos na segunda metade da década de 1990. Sua disseminação na mídia tem causado, com frequência, reações que reconectam a homossexualidade a loucura, doença e morte. Devido à restrita produção acadêmica no Brasil, objetivamos contribuir por meio deste trabalho com algumas considerações essenciais ao debate. Percorremos alguns deslocamentos historicamente importantes relativos à homossexualidade, a condução das condutas - práticas de governo, risco, Aids e ao próprio bareback. Neste sentido, o trabalho associa um estudo teórico sobre este objeto a entrevistas realizadas na cidade do Rio de Janeiro. A pesquisa empírica exploratoria recolheu dados e discursos sobre este fenômeno em nossa realidade e contexto, tendo como terreno a Associação Brasileira Interdisciplinar de Aids (ABIA) e o Grupo Pela Vidda-RJ, duas organizações não-governamentais que trabalham com a Aids, e no Grupo Arco-íris, ONG integrante do Movimento LGBT. Duas pessoas de cada uma destas ONGs foram entrevistadas. Buscamos entender como essas instituições, locais privilegiados de nossa incursão, vêm abordando o fenômeno, quais suas posições e impressões. Paralelamente, contactamos alguns voluntários adeptos do sexo bareback, por considerarmos seus discursos indispensáveis e capazes de tornar este trabalho mais rico e diverso, no entendimento do bareback, a partir de suas experiências individuais. Para tal, utilizamos dois sites de bareback internacionais (barebackrt.com e bareback.com) que hospedam perfis de brasileiros, alguns residentes na cidade do Rio de Janeiro, onde três praticantes foram integrados à pesquisa. Nossa hipótese é que as tentativas em decifrar o bareback, dar-lhe um sentido, uma verdade, acabam percorrendo trilhas normativas que têm seus limites expostos à medida que percebemos que a diversidade das práticas erótico-sexuais, da singularidade e subjetividade dos sujeitos transcendem qualquer tentativa de normatização / normalização. Assim, acreditamos que o que chamamos de bareback, seja fenômeno, subcultura, prática ou comportamento, não pode ser definido enquanto conjunto coeso de discursos, fantasias e práticas erótico-sexuais, mas pelo contrário, apresenta-se por meio de múltiplas faces ainda mais variadas, restando apenas à alusão que lhe é característica: o sexo sem camisinha, que nem sempre significará sexo sem proteção. Desta forma, tendo como perspectiva a noção de condução das condutas e cuidado de si proposta por Michel Foucault, discutimos o significado das práticas sexuais dissidentes e as questões referentes a normalização, patologização e formas de resistência.

High-efficiency reflective diffraction gratings in fused silica as (de)multiplexers at 1.55 mu m for dense wavelength division multiplexing application

We describe high-efficiency, high-dispersion reflection gratings fabricated in bulk fused Silica illuminated by incident lights in the C + L bands as (de)multiplexers for dense wavelength division multiplexing (DWDM) application. Based on the phenomenon of total internal reflection, gratings with optimized profile parameters exhibit diffraction efficiencies of more than 90% under TM- and TE-polarized incident lights for 101-nm spectral bandwidths (1520-1620 nm) and can reach an efficiency of greater than 97% for both polarizations at a wavelength of 1550 nm. Without loss of metal absorption, without coating of dielectric film layers, and independent of tooth shape, this new kind of grating should be of great interest for DWDM application. (C) 2005 Optical Society of America.

Distributed Control and Optimization for Communication and Power Systems

We are at the cusp of a historic transformation of both communication system and electricity system. This creates challenges as well as opportunities for the study of networked systems. Problems of these systems typically involve a huge number of end points that require intelligent coordination in a distributed manner. In this thesis, we develop models, theories, and scalable distributed optimization and control algorithms to overcome these challenges.

This thesis focuses on two specific areas: multi-path TCP (Transmission Control Protocol) and electricity distribution system operation and control. Multi-path TCP (MP-TCP) is a TCP extension that allows a single data stream to be split across multiple paths. MP-TCP has the potential to greatly improve reliability as well as efficiency of communication devices. We propose a fluid model for a large class of MP-TCP algorithms and identify design criteria that guarantee the existence, uniqueness, and stability of system equilibrium. We clarify how algorithm parameters impact TCP-friendliness, responsiveness, and window oscillation and demonstrate an inevitable tradeoff among these properties. We discuss the implications of these properties on the behavior of existing algorithms and motivate a new algorithm Balia (balanced linked adaptation) which generalizes existing algorithms and strikes a good balance among TCP-friendliness, responsiveness, and window oscillation. We have implemented Balia in the Linux kernel. We use our prototype to compare the new proposed algorithm Balia with existing MP-TCP algorithms.

Our second focus is on designing computationally efficient algorithms for electricity distribution system operation and control. First, we develop efficient algorithms for feeder reconfiguration in distribution networks. The feeder reconfiguration problem chooses the on/off status of the switches in a distribution network in order to minimize a certain cost such as power loss. It is a mixed integer nonlinear program and hence hard to solve. We propose a heuristic algorithm that is based on the recently developed convex relaxation of the optimal power flow problem. The algorithm is efficient and can successfully computes an optimal configuration on all networks that we have tested. Moreover we prove that the algorithm solves the feeder reconfiguration problem optimally under certain conditions. We also propose a more efficient algorithm and it incurs a loss in optimality of less than 3% on the test networks.

Second, we develop efficient distributed algorithms that solve the optimal power flow (OPF) problem on distribution networks. The OPF problem determines a network operating point that minimizes a certain objective such as generation cost or power loss. Traditionally OPF is solved in a centralized manner. With increasing penetration of volatile renewable energy resources in distribution systems, we need faster and distributed solutions for real-time feedback control. This is difficult because power flow equations are nonlinear and kirchhoff's law is global. We propose solutions for both balanced and unbalanced radial distribution networks. They exploit recent results that suggest solving for a globally optimal solution of OPF over a radial network through a second-order cone program (SOCP) or semi-definite program (SDP) relaxation. Our distributed algorithms are based on the alternating direction method of multiplier (ADMM), but unlike standard ADMM-based distributed OPF algorithms that require solving optimization subproblems using iterative methods, the proposed solutions exploit the problem structure that greatly reduce the computation time. Specifically, for balanced networks, our decomposition allows us to derive closed form solutions for these subproblems and it speeds up the convergence by 1000x times in simulations. For unbalanced networks, the subproblems reduce to either closed form solutions or eigenvalue problems whose size remains constant as the network scales up and computation time is reduced by 100x compared with iterative methods.

基于双面反射镜的N×N光开关的特性分析和实验研究

报道了基于双面反射镜的N×N光开关器件。介绍了使用双面反射镜的2×2, 4×4光开关的集成光路设计和工作原理; 采用Benes网络, 以2×2和4×4光开关为基本单元的N×N光开关器件的整体结构, 并根据“一笔画”原理, 分析了4×4, 8×8和16×16光开关矩阵的可重排无阻塞特性和光开关矩阵的光路选择算法。最后, 基于2×2, 4×4光开关技术制备了16×16光开关矩阵。测试表明, 该器件具有良好的插入损耗、回波损耗、串扰和开关时间等性能, 从而验证了设计思想和工艺的可行性。在基于双面反射镜的光开关矩

Deep silicon grating as high-extinction-ratio polarizing beam splitter

A deep binary silicon grating as high-extinction-ratio reflective polarizing beam splitter (PBS) at the wavelength of 1550 nm is presented. The design is based on the phenomenon of total internal reflection (TIR) by using the rigorous coupled wave analysis (RCWA). The extinction ratio of the rectangular PBS grating can reach 2.5×105 with the optimum grating period of 397 nm and groove depth of 1.092 μm. The effciencies of TM-polarized wave in the 0th order and TE-polarized wave in the −1st order can both reach unity at the Littrow angle. Holographic recording technology and inductively coupled plasma (ICP) etching could be used to fabricate the silicon PBS grating.

空间激光通信中的分集接收与分集均衡技术

全面对采用空间分集技术和时域Rake接收机分集的带限空间光通信系统的原理进行了模拟和分析，首次在空间激光通信领域提出了综合了分集接收和均衡技术的联合信道均衡器方法，通过计算机仿真分析，研究了不同空间分集方法在非相关空间光开关键控信号下的误比特率，在不同符号间干扰条件下采用rake接收时的误比特率，以及在不同信噪比和不同信道数时采用联合分集均衡的误码率。研究的结果确认联合分集均衡方法能够明显的提高空间光通信系统的性能。

O páthos moral da verdade: o problema do conceito da veracidade na crítica de Nietszche à moral

Na tentativa de reconstruir a crítica nietzschiana à reflexão filosófica sobre o fenômeno moral, o presente trabalho investiga os critérios utilizados pela Filosofia moral na sistematização dos conceitos de liberdade e obrigatoriedade sob a base de uma assim chamada vontade de verdade. O propósito dessa reconstrução crítica consiste em averiguar o papel desempenhado pela noção de veracidade na compreensão filosófica das ações e normas morais. Para tanto, o estudo se ocupa, em um primeiro momento, dos argumentos utilizados por Nietzsche ao conceber a interpretação filosófica em sua essência moral e ao identificar na exigência humana por sociabilidade uma das gêneses da noção de veracidade. Essas duas hipóteses são decisivas na análise das propostas hermenêuticas ocidentais referentes ao fenômeno moral, tal como Nietzsche propôs no famoso texto Sobre verdade e mentira em sentido extramoral (1873) e em sua obra tardia. Em seguida, é abordada a dificuldade que a tradição filosófica enfrentou na tentativa de fundamentação das normas e ações morais, sobretudo à luz da crise do pensamento metafísico. Por fim, procura-se apresentar a reflexão de Nietzsche sobre o fenômeno moral como o meio mais adequado para se responder à crise do pensamento metafísico, na medida em que procura substituir os pressupostos teóricos da tradição filosófica ocidental e apresentar a noção de veracidade como probidade e virtude por excelência do espírito livre.

Violência intrafamiliar contra a criança na perspectiva de familiares: uma compreensão à luz de Alfred Schutz

A multidimensionalidade e a consistência empírica da violência convidam aos questionamentos, debates e reflexões acerca desse fenômeno. A violência intrafamiliar contra a criança consiste em formas agressivas de membros da família se relacionarem adotando essa prática como solução de conflitos e estratégia para a correção e educação das crianças. Objeto de estudo: a violência intrafamiliar à criança na perspectiva de familiares. Objetivos: Identificar os atos considerados violentos contra a criança na perspectiva de familiares; descrever as implicações desses atos violentos na vida da criança sob a ótica de familiares; conhecer quais as atitudes que os familiares consideram importantes para a prevenção da violência contra a criança e discutir a violência intrafamiliar à criança na perspectiva de familiares a luz da fenomenologia sociológica de Alfred Schutz. Descrição metodológica: Trata-se de estudo de natureza qualitativo desenvolvido em um ambulatório de pediatria de um hospital universitário do município do Rio de Janeiro, com a participação de 12 familiares. Para a interpretação do material empírico foi utilizada a análise de conteúdo de Bardin na modalidade temática. O referencial teórico da fenomenologia sociológica de Alfred Schutz sustentou a discussão dos resultados. Resultados: Emergiram 6 (seis) categorias analíticas, a saber: Violência nas relações familiares; Palavras que ferem; Formas silenciosas de descuido e descaso para com a vida do outro; Violência gera violência; Implicações da violência intrafamiliar na vida da criança; Falar com a criança para evitar a violência. Os familiares a partir de uma relação anônima entendem a violência intrafamiliar contra a criança na perspectiva de um constructo teórico, na qual se situam como espectadores e não como perpetradores dos atos violentos. Para eles, os castigos físicos, a violência psicológica, a negligência e o abandono praticados pelas pessoas são considerados violência intrafamiliar contra a criança. Práticas como palmadinhas e tapinhas foram descritas como forma de correção e educação da criança. No se refere às implicações dos atos violentos na vida da criança apontaram aquelas que podem levar marcas profundas na memória da criança vitimizada, bem como em sua vida sócio-afetiva. O estudo possibilitou a aproximação ao conhecimento de uma realidade que afeta inúmeras crianças, onde os familiares sinalizaram que a melhor maneira de se prevenir a violência intrafamiliar é por meio do estabelecimento de uma conversa esclarecedora com a criança, abordando os assuntos pertinentes para cada ocasião com que se deparam. A inserção dessa temática desde os cursos de graduação para profissionais que lidam com a criança e sua família poderá ampliar os estudos neste campo e subsidiar a formação desses profissionais para lidar de forma adequada com o fenômeno da violência intrafamiliar.

Direct growth of horizontally aligned carbon nanotubes between electrodes and its application to field-effect transistors

This paper presents direct growth of horizontally aligned carbon nanotubes (CNTs) between two predefined various inter-spacing up to tens of microns of electrodes (pads) and its use as CNT field-effect transistors (CNT-FETs). The catalytic metals were prepared, consisting of iron (Fe), aluminum (Al) and platinum (Pt) triple layers, on the thermal silicon oxide substrate (Pt/Al/Fe/SiO2). Scanning electron microscopy measurements of CNT-FETs from the as-grown samples showed that over 80% of the nanotubes are grown across the catalytic electrodes. Moreover, the number of CNTs across the catalytic electrodes is roughly controllable by adjusting the growth condition. The Al, as the upper layer on Fe electrode, not only plays a role as a barrier to prevent vertical growth but also serves as a porous medium that helps in forming smaller nano-sized Fe particles which would be necessary for lateral growth of CNTs. Back-gate field effect transistors were demonstrated with the laterally aligned CNTs. The on/off ratios in all the measured devices are lower than 100 due to the drain leakage current. ©2010 IEEE.

Directly modulated wavelength-multiplexed integrated microring laser array

The first demonstration of a directly modulated microring laser array is presented for on-off keyed, wavelength- division- multiplexed fiber-optic data transmission. GaInAsP-InP microring resonators oscillating at separate wavelengths in the 1.5-μm band are vertically coupled to a common passive waveguide bus, which is fabricated on the reverse side of the InP membrane. Two microrings defined with radii for a wavelength channel separation of 6 nm have been assessed for both individual and simultaneous operation. Negligible power penalty (<0.2 dB) is observed for wavelength-division-multiplexed operation with and without transmission over a 25-km fiber span in a manner which indicates low crosstalk between the integrated sources. A device area of less than 0.12 mm2 per microring on a common passive bus allows a highly scalable solution for short-reach wavelength-multiplexed links. © 2008 IEEE.

General features and productivity of the Wadge Bank trawl fishery

For several years one of the world's few successful tropical trawl fisheries has been carried on off the southern tip of India. Much of it has been under the auspices of the Government of Ceylon. Records covering the entire history of the fishery are remarkably complete and those of the last ten years are unusually detailed. The purpose of this paper is to summarize these records and relate them to information from other sources in such a way as to illustrate the principal features of the fishery and permit comparisons with other fisheries. This should provide a sound basis for clear thinking about the industry's present problems and prospects. This is important because the fishery is expanding.

Deposition of diamond-like carbon films by photon-enhanced chemical vapour deposition of methane using a windowless hydrogen lamp

Thin films of diamond-like carbon (DLC) have been deposited using a novel photon-enhanced chemical vapour deposition (photo-CVD) method. This low energy method may be a way to produce better interfaces in electronic devices by reducing damage due to ion bombardment. Methane requires high energy photons for photolysis to take place and these are not transmitted in most photo-CVD methods owing to the presence of a window between the lamp and the deposition environment. In our photo-CVD system there is no window and all the high energy photons are transmitted into the reaction gas. Initial work has proved promising and this paper presents recent results. Films have been characterized by measuring electron energy loss spectra, by ellipsometry and by fabricating and testing diode structures. Results indicate that the films are of a largely amorphous nature and are semiconducting. Diode structures have on/off current ratios of up to 106.

Short-channel polymer field-effect-transistor fabrication using spin-coating-induced edge template and ink-jet printing

A method to fabricate polymer field-effect transistors with submicron channel lengths is described. A thin polymer film is spin coated on a prepatterned resist with a low resolution to create a thickness contrast in the overcoated polymer layer. After plasma and solvent etching, a submicron-sized line structure, which templates the contour of the prepattern, is obtained. A further lift-off process is applied to define source-drain electrodes of transistors. With a combination of ink-jet printing, transistors with channel length down to 400 nm have been fabricated by this method. We show that drive current density increases as expected, while the on/off current ratio 106 is achieved. © 2005 American Institute of Physics.