Impaired acuity of the approximate number system in 22q11.2 microdeletion syndrome

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

APPROXIMATE CALCULATION OF SUMS I: BOUNDS FOR THE ZEROS OF GRAM POLYNOMIALS

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Approximate analytic expression for the eigenenergies of the anharmonic oscillator V(x)=Ax6+Bx2

An approximate analytic expression for the eigenenergies of the anharmonic oscillator V(x)=Ax6+Bx2 is introduced, starting from particular analytic solutions which are valid when certain relations between the parameters A and B are held. © 1995 The American Physical Society.

Query Player : a component for Triskel architecture

[ES] Uno de los cinco componentes de la arquitectura triskel,  una base de datos NoSQL que trata de dar solución al problema de Big data de la web semántica, el  gran número de identificadores de recursos que se necesitarían debido al creciente número de sitios web, concretamente el motor de gestión de ejecución de patrones basados en tripletas y en la tecnología RDF. Se encarga de recoger la petición de consulta por parte del intérprete, analizar los patrones que intervienen en la consulta en busca de dependencias explotables entre ellos, y así poder realizar la consulta con mayor rapidez además de ir resolviendo los diferentes patrones contra el almacenamiento, un TripleStore, y devolver el resultado de la petición en una tabla.

Improving approximate inverses based on Frobenius norm minimization

[EN]Approximate inverses, based on Frobenius norm minimization, of real nonsingular matrices are analyzed from a purely theoretical point of view. In this context, this paper provides several sufficient conditions, that assure us the possibility of improving (in the sense of the Frobenius norm) some given approximate inverses. Moreover, the optimal approximate inverses of matrix A ∈ R n×n , among all matrices belonging to certain subspaces of R n×n , are obtained. Particularly, a natural generalization of the classical normal equations of the system Ax = b is given, when searching for approximate inverses N 6= AT such that AN is symmetric and kAN − IkF < AAT − I F …

A generalization of the optimal diagonal approximate inverse preconditioner

[EN ]The classical optimal (in the Frobenius sense) diagonal preconditioner for large sparse linear systems Ax = b is generalized and improved. The new proposed approximate inverse preconditioner N is based on the minimization of the Frobenius norm of the residual matrix AM − I, where M runs over a certain linear subspace of n × n real matrices, defined by a prescribed sparsity pattern. The number of nonzero entries of the n×n preconditioning matrix N is less than or equal to 2n, and n of them are selected as the optimal positions in each of the n columns of matrix N. All theoretical results are justified in detail…

Query rewriting in information retrieval: automatic context extraction from local user documents to improve query results

The central objective of research in Information Retrieval (IR) is to discover new techniques to retrieve relevant information in order to satisfy an Information Need. The Information Need is satisfied when relevant information can be provided to the user. In IR, relevance is a fundamental concept which has changed over time, from popular to personal, i.e., what was considered relevant before was information for the whole population, but what is considered relevant now is specific information for each user. Hence, there is a need to connect the behavior of the system to the condition of a particular person and his social context; thereby an interdisciplinary sector called Human-Centered Computing was born. For the modern search engine, the information extracted for the individual user is crucial. According to the Personalized Search (PS), two different techniques are necessary to personalize a search: contextualization (interconnected conditions that occur in an activity), and individualization (characteristics that distinguish an individual). This movement of focus to the individual's need undermines the rigid linearity of the classical model overtaken the ``berry picking'' model which explains that the terms change thanks to the informational feedback received from the search activity introducing the concept of evolution of search terms. The development of Information Foraging theory, which observed the correlations between animal foraging and human information foraging, also contributed to this transformation through attempts to optimize the cost-benefit ratio. This thesis arose from the need to satisfy human individuality when searching for information, and it develops a synergistic collaboration between the frontiers of technological innovation and the recent advances in IR. The search method developed exploits what is relevant for the user by changing radically the way in which an Information Need is expressed, because now it is expressed through the generation of the query and its own context. As a matter of fact the method was born under the pretense to improve the quality of search by rewriting the query based on the contexts automatically generated from a local knowledge base. Furthermore, the idea of optimizing each IR system has led to develop it as a middleware of interaction between the user and the IR system. Thereby the system has just two possible actions: rewriting the query, and reordering the result. Equivalent actions to the approach was described from the PS that generally exploits information derived from analysis of user behavior, while the proposed approach exploits knowledge provided by the user. The thesis went further to generate a novel method for an assessment procedure, according to the "Cranfield paradigm", in order to evaluate this type of IR systems. The results achieved are interesting considering both the effectiveness achieved and the innovative approach undertaken together with the several applications inspired using a local knowledge base.

Aggregazione delle query per sistemi pub/sub: il progetto SALES

I sistemi mobili rappresentano una classe di sistemi distribuiti caratterizzata dalla presenza di dispositivi portatili eterogenei quali PDA, laptop e telefoni cellulari che interagiscono tra loro mediante una rete di interconnessione wireless. Una classe di sistemi mobili di particolare interesse è costituita dai sistemi basati sul modello di interazione publish/subscribe. Secondo tale schema, i nodi all'interno di una rete possono assumere due ruoli differenti: i produttori di informazione, chiamati publisher, ed i consumatori di informazione, chiamati subscriber. Tipicamente, l'interazione tra essi è mediata da un gestore di eventi che indirizza correttamente le informazioni ricevute dai publisher verso i subscriber interessati, sulla base degli interessi espressi da questi ultimi tramite sottoscrizioni. Nella progettazione di sistemi mobili, a differenza di quelli tradizionali basati su nodi fissi, bisogna tenere conto di problemi quali la scarsa capacità computazionale dei dispositivi e la limitata larghezza di banda delle reti wireless. All'interno di tale ambito, stanno recentemente assumendo sempre maggiore importanza i sistemi context-aware, ovvero sistemi mobili che sfruttano i dati provenienti dall'ambiente circostante e dai dispositivi stessi per adattare il proprio comportamento e notificare agli utenti la presenza di informazioni potenzialmente utili. Nello studio di questi sistemi, si è notato che i nodi che si trovano nella stessa area geografica generano tipicamente delle sottoscrizioni che presentano tra loro un certo grado di similarità e coperture parziali o totali. Il gruppo di ricerca del DEIS dell’Università di Bologna ha sviluppato un'infrastruttura di supporto per sistemi mobili context-aware, chiamata SALES. Attualmente il sistema progettato non considera le similarità delle sottoscrizioni e quindi non sfrutta opportunamente tale informazione. In questo contesto si rende necessario l'adozione di opportune tecniche di aggregazione delle sottoscrizioni atte ad alleggerire la computazione dei nodi mobili e le comunicazioni tra loro. Il lavoro presentato in questa tesi sarà finalizzato alla ricerca, all'adattamento ed all'implementazione di una tecnica di aggregazione delle sottoscrizioni. Tale tecnica avrà lo scopo di rilevare e sfruttare le similarità delle sottoscrizioni ricevute dal sistema al fine di ridurne il numero; in questo modo, quando un nodo riceverà un dato, il processo di confronto tra l'insieme delle sottoscrizioni memorizzate e il dato ricevuto sarà più leggero, consentendo un risparmio di risorse computazionali. Inoltre, adattando tali tecniche, sarà possibile modulare anche il traffico dati scaturito dalle risposte alle sottoscrizioni. La struttura di questa tesi prevede un primo capitolo sui sistemi context-aware, descrivendone le principali caratteristiche e mettendo in luce le problematiche ad essi associate. Il secondo capitolo illustra il modello di comunicazione Publish/Subscribe, modello di riferimento per i moderni sistemi context-aware e per i sistemi mobili in generale. Il terzo capitolo descrive l'infrastruttura SALES sulla quale si è progettata, implementata e testata la soluzione proposta in questa tesi. Il quarto capitolo presenta le principali tecniche di aggregazione delle sottoscrizioni e spiega come possono essere adattate al contesto di questa tesi. Il quinto capitolo effettua l'analisi dei requisiti per comprendere meglio il comportamento della soluzione; seguono la progettazione e l’implementazione della soluzione su SALES. Infine, il sesto capitolo riporta in dettaglio i risultati ottenuti da alcuni degli esperimenti effettuati e vengono messi a confronto con quelli rilevati dal sistema di partenza.

Efficient parallel proximity queries and an application to highly complex motion planning problems with many narrow passages

In vielen Bereichen der industriellen Fertigung, wie zum Beispiel in der Automobilindustrie, wer- den digitale Versuchsmodelle (sog. digital mock-ups) eingesetzt, um die Entwicklung komplexer Maschinen m ̈oglichst gut durch Computersysteme unterstu ̈tzen zu k ̈onnen. Hierbei spielen Be- wegungsplanungsalgorithmen eine wichtige Rolle, um zu gew ̈ahrleisten, dass diese digitalen Pro- totypen auch kollisionsfrei zusammengesetzt werden k ̈onnen. In den letzten Jahrzehnten haben sich hier sampling-basierte Verfahren besonders bew ̈ahrt. Diese erzeugen eine große Anzahl von zuf ̈alligen Lagen fu ̈r das ein-/auszubauende Objekt und verwenden einen Kollisionserken- nungsmechanismus, um die einzelnen Lagen auf Gu ̈ltigkeit zu u ̈berpru ̈fen. Daher spielt die Kollisionserkennung eine wesentliche Rolle beim Design effizienter Bewegungsplanungsalgorith- men. Eine Schwierigkeit fu ̈r diese Klasse von Planern stellen sogenannte “narrow passages” dar, schmale Passagen also, die immer dort auftreten, wo die Bewegungsfreiheit der zu planenden Objekte stark eingeschr ̈ankt ist. An solchen Stellen kann es schwierig sein, eine ausreichende Anzahl von kollisionsfreien Samples zu finden. Es ist dann m ̈oglicherweise n ̈otig, ausgeklu ̈geltere Techniken einzusetzen, um eine gute Performance der Algorithmen zu erreichen.rnDie vorliegende Arbeit gliedert sich in zwei Teile: Im ersten Teil untersuchen wir parallele Kollisionserkennungsalgorithmen. Da wir auf eine Anwendung bei sampling-basierten Bewe- gungsplanern abzielen, w ̈ahlen wir hier eine Problemstellung, bei der wir stets die selben zwei Objekte, aber in einer großen Anzahl von unterschiedlichen Lagen auf Kollision testen. Wir im- plementieren und vergleichen verschiedene Verfahren, die auf Hu ̈llk ̈operhierarchien (BVHs) und hierarchische Grids als Beschleunigungsstrukturen zuru ̈ckgreifen. Alle beschriebenen Verfahren wurden auf mehreren CPU-Kernen parallelisiert. Daru ̈ber hinaus vergleichen wir verschiedene CUDA Kernels zur Durchfu ̈hrung BVH-basierter Kollisionstests auf der GPU. Neben einer un- terschiedlichen Verteilung der Arbeit auf die parallelen GPU Threads untersuchen wir hier die Auswirkung verschiedener Speicherzugriffsmuster auf die Performance der resultierenden Algo- rithmen. Weiter stellen wir eine Reihe von approximativen Kollisionstests vor, die auf den beschriebenen Verfahren basieren. Wenn eine geringere Genauigkeit der Tests tolerierbar ist, kann so eine weitere Verbesserung der Performance erzielt werden.rnIm zweiten Teil der Arbeit beschreiben wir einen von uns entworfenen parallelen, sampling- basierten Bewegungsplaner zur Behandlung hochkomplexer Probleme mit mehreren “narrow passages”. Das Verfahren arbeitet in zwei Phasen. Die grundlegende Idee ist hierbei, in der er- sten Planungsphase konzeptionell kleinere Fehler zuzulassen, um die Planungseffizienz zu erh ̈ohen und den resultierenden Pfad dann in einer zweiten Phase zu reparieren. Der hierzu in Phase I eingesetzte Planer basiert auf sogenannten Expansive Space Trees. Zus ̈atzlich haben wir den Planer mit einer Freidru ̈ckoperation ausgestattet, die es erlaubt, kleinere Kollisionen aufzul ̈osen und so die Effizienz in Bereichen mit eingeschr ̈ankter Bewegungsfreiheit zu erh ̈ohen. Optional erlaubt unsere Implementierung den Einsatz von approximativen Kollisionstests. Dies setzt die Genauigkeit der ersten Planungsphase weiter herab, fu ̈hrt aber auch zu einer weiteren Perfor- mancesteigerung. Die aus Phase I resultierenden Bewegungspfade sind dann unter Umst ̈anden nicht komplett kollisionsfrei. Um diese Pfade zu reparieren, haben wir einen neuartigen Pla- nungsalgorithmus entworfen, der lokal beschr ̈ankt auf eine kleine Umgebung um den bestehenden Pfad einen neuen, kollisionsfreien Bewegungspfad plant.rnWir haben den beschriebenen Algorithmus mit einer Klasse von neuen, schwierigen Metall- Puzzlen getestet, die zum Teil mehrere “narrow passages” aufweisen. Unseres Wissens nach ist eine Sammlung vergleichbar komplexer Benchmarks nicht ̈offentlich zug ̈anglich und wir fan- den auch keine Beschreibung von vergleichbar komplexen Benchmarks in der Motion-Planning Literatur.

ABCtoolbox: a versatile toolkit for approximate Bayesian computations

Background The estimation of demographic parameters from genetic data often requires the computation of likelihoods. However, the likelihood function is computationally intractable for many realistic evolutionary models, and the use of Bayesian inference has therefore been limited to very simple models. The situation changed recently with the advent of Approximate Bayesian Computation (ABC) algorithms allowing one to obtain parameter posterior distributions based on simulations not requiring likelihood computations. Results Here we present ABCtoolbox, a series of open source programs to perform Approximate Bayesian Computations (ABC). It implements various ABC algorithms including rejection sampling, MCMC without likelihood, a Particle-based sampler and ABC-GLM. ABCtoolbox is bundled with, but not limited to, a program that allows parameter inference in a population genetics context and the simultaneous use of different types of markers with different ploidy levels. In addition, ABCtoolbox can also interact with most simulation and summary statistics computation programs. The usability of the ABCtoolbox is demonstrated by inferring the evolutionary history of two evolutionary lineages of Microtus arvalis. Using nuclear microsatellites and mitochondrial sequence data in the same estimation procedure enabled us to infer sex-specific population sizes and migration rates and to find that males show smaller population sizes but much higher levels of migration than females. Conclusion ABCtoolbox allows a user to perform all the necessary steps of a full ABC analysis, from parameter sampling from prior distributions, data simulations, computation of summary statistics, estimation of posterior distributions, model choice, validation of the estimation procedure, and visualization of the results.