Modeling storm events to investigate the influence of the stream¿catchment interface zone on stream biogeochemistry

We formulate a new mixing model to explore hydrological and chemical conditions under which the interface between the stream and catchment interface (SCI) influences the release of reactive solutes into stream water during storms. Physically, the SCI corresponds to the hyporheic/riparian sediments. In the new model this interface is coupled through a bidirectional water exchange to the conventional two components mixing model. Simulations show that the influence of the SCI on stream solute dynamics during storms is detectable when the runoff event is dominated by the infiltrated groundwater component that flows through the SCI before entering the stream and when the flux of solutes released from SCI sediments is similar to, or higher than, the solute flux carried by the groundwater. Dissolved organic carbon (DOC) and nitrate data from two small Mediterranean streams obtained during storms are compared to results from simulations using the new model to discern the circumstances under which the SCI is likely to control the dynamics of reactive solutes in streams. The simulations and the comparisons with empirical data suggest that the new mixing model may be especially appropriate for streams in which the periodic, or persistent, abrupt changes in the level of riparian groundwater exert hydrologic control on flux of biologically reactive fluxes between the riparian/hyporheic compartment and the stream water.

Transition from hemifusion to pore opening is rate limiting for vacuole membrane fusion.

Fusion pore opening and expansion are considered the most energy-demanding steps in viral fusion. Whether this also applies to soluble N-ethyl-maleimide sensitive fusion protein attachment protein receptor (SNARE)- and Rab-dependent fusion events has been unknown. We have addressed the problem by characterizing the effects of lysophosphatidylcholine (LPC) and other late-stage inhibitors on lipid mixing and pore opening during vacuole fusion. LPC inhibits fusion by inducing positive curvature in the bilayer and changing its biophysical properties. The LPC block reversibly prevented formation of the hemifusion intermediate that allows lipid, but not content, mixing. Transition from hemifusion to pore opening was sensitive to guanosine-5'-(gamma-thio)triphosphate. It required the vacuolar adenosine triphosphatase V0 sector and coincided with its transformation. Pore opening was rate limiting for the reaction. As with viral fusion, opening the fusion pore may be the most energy-demanding step for intracellular, SNARE-dependent fusion reactions, suggesting that fundamental aspects of lipid mixing and pore opening are related for both systems.

A dynamic model of keratinocyte stem cell renewal and differentiation: role of the p21WAF1/Cip1 and Notch1 signaling pathways.

We present here a dynamic model of functional equilibrium between keratinocyte stem cells, transit amplifying populations and cells that are reversibly versus irreversibly committed to differentiation. According to this model, the size of keratinocyte stem cell populations can be controlled at multiple levels, including relative late steps in the sequence of events leading to terminal differentiation and by the influences of a heterogeneous extra-cellular environment. We discuss how work in our laboratory, on the interconnection between the cyclin/CDK inhibitor p21WAF1/Cip1 and the Notch1 signaling pathways, provides strong support to this dynamic model of stem cell versus committed and/or differentiated keratinocyte populations.

Influence of CD4+/CD25+ regulatory T cells on atherogenesis in patients with end-stage kidney disease.

Atherosclerosis, which is influenced by both traditional and nontraditional cardiovascular risk factors and has been characterized as an inflammatory process, is considered to be the main cause of the elevated cardiovascular risk associated with chronic kidney disease. The inflammatory component of atherosclerosis can be separated into an innate immune response involving monocytes and macrophages that respond to the excessive uptake of lipoproteins and an adaptive immune response that involves antigen-specific T cells. Concurrent with the influx of immune cells to the site of atherosclerotic lesion, the role of the adaptive immune response gradually increases. One of those cells are represented by the CD4+/CD25+ Tregs, which play indispensable roles in the maintenance of natural self-tolerance and negative control of pathological, as well as physiological, immune responses. Altered self-antigens such as oxidized LDLs may induce the development of CD4+/CD25+ Tregs with atheroprotective properties. However, atherosclerosis may be promoted by an imbalance between regulatory and pathogenic immunity that may be represented by the low expression of the forkhead box transcription factor (Foxp3) in CD4+/CD25+ Tregs. Such a defect may break immunologic tolerance and alter both specific and bystander immune suppression, leading to exacerbation of plaque development. Patients with end-stage kidney disease (ESKD) display a cellular immune dysfunction and accelerated atherosclerosis. Uremic solutes that accumulate during ESKD may be involved in these processes. In patients with ESKD and especially in those that are chronically hemodialyzed, oxidative stress induced by oxidized LDLs may increase CD4+/CD25+ Treg sensitivity to Fas-mediated apoptosis as a consequence of specific dysregulation of IL-2 expression. This review will focus on the current state of knowledge regarding the influence of CD4+/CD25+ Tregs on atherogenesis in patients with ESKD, and the potential effect of statins on the circulating number and the functional properties of these cells.

Fluorescence-activated cell sorting and cloning of bona fide CD8+ CTL with reversible MHC-peptide and antibody Fab' conjugates.

The isolation of subsets of Ag-specific T cells for in vitro and in vivo studies by FACS is compromised by the fact that the soluble MHC-peptide complexes and Abs used for staining, especially when combined, induce unwanted T cell activation and eventually apoptosis. This is especially a problem for CD8+ CTL, which are susceptible to activation-dependent cell death. In this study, we show that reversible MHC-peptide complexes (tetramers) can be prepared by conjugating MHC-peptide monomers with desthiobiotin (DTB; also called dethiobiotin) and multimerization by reaction with fluorescent streptavidin. While in the cold these reagents are stable and allow good staining, they rapidly dissociate in monomers at elevated temperatures, especially in the presence of free biotin. FACS cloning of Melan-A (MART-1)-specific CTL from a melanoma-infiltrated lymph node with reversible HLA-A2 Melan-A26-35 multimers yielded over two times more clones than when using the conventional biotin-containing multimers. CTL clones obtained by means of reversible multimers killed Melan-A-positive tumor cells more efficiently as compared with clones obtained with the stable multimers. Among the CTL obtained with the reversible multimers, but much less among those obtained with the stable multimers, a high proportion of clones exhibited high functional and physical avidity and died upon incubation with soluble MHC-peptide complexes. Finally, we show that Fab' of an anti-CD8 Ab can be converted in reversible DTB streptavidin conjugates the same way. These DTB reagents efficiently and reversibly stained murine and human CTL without affecting their viability.

Molecular bases of circadian rhythmicity in renal physiology and pathology.

The physiological processes that maintain body homeostasis oscillate during the day. Diurnal changes characterize kidney functions, comprising regulation of hydro-electrolytic and acid-base balance, reabsorption of small solutes and hormone production. Renal physiology is characterized by 24-h periodicity and contributes to circadian variability of blood pressure levels, related as well to nychthemeral changes of sodium sensitivity, physical activity, vascular tone, autonomic function and neurotransmitter release from sympathetic innervations. The circadian rhythmicity of body physiology is driven by central and peripheral biological clockworks and entrained by the geophysical light/dark cycle. Chronodisruption, defined as the mismatch between environmental-social cues and physiological-behavioral patterns, causes internal desynchronization of periodic functions, leading to pathophysiological mechanisms underlying degenerative, immune related, metabolic and neoplastic diseases. In this review we will address the genetic, molecular and anatomical elements that hardwire circadian rhythmicity in renal physiology and subtend disarray of time-dependent changes in renal pathology.

Magmatic fluids in the Breccia-hosted epithermal Au-Ag deposit of Rosia Montana, Romania

The breccia-hosted epithermal Au-Ag deposit of Rosia Montana is located 7 kin northeast of Abrud, in the northern part of the South Apuseni Mountains, Romania. Estimated total reserves of 214.91 million metric toils (Mt) of ore at 1.46 g/t An and 6.9 g/t Ag (10.1 Moz of An and 47.6 Moz of Ag) make Rosia Montana one of the largest gold deposits in Europe. At this location, Miocene calc-alkaline magmatic and hydrothermal activity was associated with local extensional tectonics within a strike-slip regime related to the indentation of the Adriatic microplate into the European plate during the Carpathian orogenesis. The host rocks of the magmatic complex consist of pre-Mesozoic metamorphosed continental crust covered by Cretaceous turbiditic sediment (flysch). Magmatic activity at Rosia Montana and its surroundings occurred in several pulses and lasted about 7 m.y, Rosia Montana is a breccia-hosted epithermal system related to strong phreatomagmatic activity due to the shallow emplacement of the Montana dacite. The Montana dacite intruded Miocene volcaniclastic material (volcaniclastic breccias) and crops out at Cetate and Carnic Hills. Current mining is focused primarily on the Cetate open pit, which was mapped in detail, leading to the recognition of three distinct breccia bodies: the dacite breccia with a dominantly hydrothermal matrix, the gray polymict breccia with a greater proportion of sand-sized matrix support, and the black polymict breccia, which reached to the surface, contains carbonized tree trunks and has a dominantly barren elastic matrix. The hydrothermal alteration is pervasive. Adularia alteration with a phyllic overprint is ubiquitous; silicification and argillic alteration occur locally. Mineralization consists of quartz, adularia, carbonates (commonly Mn-rich), pyrite, Fe-poor sphalerite, galena, chalcopyrite, tetrahedrite, and native gold and occurs as disseminations, as well as in veins and filling vugs within the Montana dacite and the different breccias. The age of mineralization (12.85 +/- 0.07 Ma) was determined by Ar-40- Ar-39 dating on hydrothermal adularia crystals from vugs in the dacite breccia in the Cetate open pit. Microthermometric measurements of fluid inclusions in quartz phenocrysts from the Montana dacite revealed two fluid types that are absent from the hydrothermal breccia and must have been trapped at depth prior to dacite dome emplacement: brine inclusions (32-55 -wt % NaCl equiv, homogenizing at T-h > 460 degrees C) and intermediate density fluids (4.9-15.6 wt % NaCl equiv, T, between 345 degrees-430 degrees C). Secondary aqueous fluid inclusion assemblages in the phenocrysts have salinities of 0.2 to 2.2 wt percent NaCl equiv and T-h of 200 degrees to 280 degrees C. Fluid inclusion assemblages in hydrothermal quartz from breccias and veins have salinities of 0.2 to 3.4 wt percent NaCl equiv and T-h, from 200 degrees to 270 degrees C. The oxygen isotope composition of several zones of an ore-related epithermal quartz crystal indicate a very constant delta O-18 of 4.5 to 5.0 per mil for the mineralizing fluid, despite significant salinity and temperature variation over time. Following microthermometry, selected fluid inclusion assemblages were analyzed by laser ablation-inductively coupled-plasma mass spectrometry (LA-ICMS). Despite systematic differences in salinity between phenocryst-hosted fluids trapped at depth and fluids from quartz in the epithermal breccias, all fluids have overlapping major and trace cation ratios, including identical Na/K/Rb/Sr/Cs/Ba. Consistent with the constant near-magmatic oxygen isotope composition of the hydrothermal fluids, these data strongly indicate a common magmatic component of these chemically conservative solutes in all fluids. Cu, Pb, Zn, and Mn show variations in concentration relative to the relatively non-reactive alkalis, reflecting the precipitation of sulfide minerals together with An in the epithermal breccia, and possibly of Cu in an inferred subjacent porphyry environment. The magmatic-hydrothermal processes responsible for epithermal Au-Ag mineralization at Rosia Montana are, however, not directly related to the formation of the spatially associated porphyry Cu-Au deposit of Rosia Poieni, which occurred lout 3 m.y. later.

Intracellular thiol-mediated modulation of epithelial sodium channel activity.

The epithelial sodium channel ENaC is physiologically important in the kidney for the regulation of the extracellular fluid volume, and in the lungs for the maintenance of the appropriate airway surface liquid volume that lines the pulmonary epithelium. Besides the regulation of ENaC by hormones, intracellular factors such as Na(+) ions, pH, or Ca(2+) are responsible for fast adaptive responses of ENaC activity to changes in the intracellular milieu. In this study, we show that ENaC is rapidly and reversibly inhibited by internal sulfhydryl-reactive molecules such as methanethiosulfonate derivatives of different sizes, the metal cations Cd(2+) and Zn(2+), or copper(II) phenanthroline, a mild oxidizing agent that promotes the formation of disulfide bonds. At the single channel level, these agents applied intracellularly induce the appearance of long channel closures, suggesting an effect on ENaC gating. The intracellular reducing agent dithiothreitol fully reverses the rundown of ENaC activity in inside-out patches. Our observations suggest that changes in intracellular redox potential modulate ENaC activity and may regulate ENaC-mediated Na(+) transport in epithelia. Finally, substitution experiments reveal that multiple cysteine residues in the amino and carboxyl termini of ENaC subunits are responsible for this thiol-mediated inhibition of ENaC.

Väkevän urealiuoksen puhdistaminen kalvotekniikalla

Kirjallisuusosassa käsiteltiin nanosuodatus-, käänteisosmoosi- ja elektrodialyysitekniikoita liuosten puhdistuksessa. Nanosuodatuksella ja käänteisosmoosilla voidaan liuottimesta erottaa pienen moolimassan omaavia liuenneita aineita ohuen kalvon avulla. Nanosuodatuksessa ja käänteisosmoosissa ajavana voimana on paine, jonka tulee ylittää liuoksen osmoottinen paine. Elektrodialyysissä ajavana voimana toimii sähköpotentiaaliero. Tekniikka käyttää hyväkseen ionien tai molekyylien kykyä johtaa sähköä. Elektrodialyysillä voidaan liuoksesta erottaa toisistaan varauksettomat ja varaukselliset komponentit sähköä johtavan membraanin avulla. Kokeellisessa osassa väkevää ureavesiliuosta suodatettiin nanosuodatus- ja käänteisosmoosikalvoilla tutkien paineen, lämpötilan ja konsentroitumisen vaikutusta vuohonja retentioon. Tarkoituksena oli saada urea tuotteena permeaattiin ja epäpuhtaudet erottumaan retentaattiin. Permeaattien epäpuhtauksien pitoisuuksia verrattiin tuotteen spesifikaation raja-arvoihin. Suodatukset tehtiin Lappeenrannan teknillisen yliopiston tiloissa DSS Labstak M20 suotimella. Työssä käytettiin NF1-, NF2-, NF270-, NF-, NF90-, Desal-5 DK-, OPMN-P 70- ja TFC ULP-kalvoja. Nanosuodatuskalvot NF2- ja NF270 antoivat parhaan vuon ja erotuskyvyn suhteen puhdistettaessa urealiuosta. Paineen noustessa kalvojen retentiot paranivat. Lämpötilan noustessa vuo parani, joskin täytyy huomioida urean kiihtyvä hajoaminen lähestyttäessä 40 °C astetta. Kalvojen kestävyyttä ureasuodatuksissa ei voitu näiden kokeiden avulla varmentaa.

Effect of physico-chemical conditions and operating parameters on flux and retention of different components in ultrafiltration and nanofiltration fractionation of sweet whey

Tässä väitöstutkimuksessa tutkittiin fysikaaliskemiallisten olosuhteiden ja toimintaparametrien vaikutusta juustoheran fraktiointiin. Kirjallisuusosassa on käsitelty heran ympäristövaikutusta, heran hyödyntämistä ja heran käsittelyä kalvotekniikalla. Kokeellinen osa on jaettu kahteen osaan, joista ensimmäinen käsittelee ultrasuodatusta ja toinen nanosuodatusta juustoheran fraktioinnissa. Ultrasuodatuskalvon valinta tehtiin perustuen kalvon cut-off lukuun, joka oli määritetty polyetyleeniglykoliliuoksilla olosuhteissa, joissa konsentraatiopolariosaatioei häiritse mittausta. Kriittisen vuon konseptia käytettiin sopivan proteiinikonsentraation löytämiseksi ultrasuodatuskokeisiin, koska heraproteiinit ovat tunnetusti kalvoa likaavia aineita. Ultrasuodatuskokeissa tutkittiin heran eri komponenttien suodattumista kalvon läpi ja siihen vaikuttavia ominaisuuksia. Herapermeaattien peptidifraktiot analysoitiin kokoekskluusiokromatografialla ja MALDI-TOF massaspektrometrillä. Kokeissa käytettävien nanosuodatuskalvojen keskimääräinen huokoskoko analysoitiin neutraaleilla liukoisilla aineilla ja zeta-potentiaalit virtauspotentiaalimittauksilla. Aminohappoja käytettiin malliaineina tutkittaessa huokoskoon ja varauksen merkitystä erotuksessa. Aminohappojen retentioon vaikuttivat pH ja liuoksen ionivahvuus sekä molekyylien väliset vuorovaikutukset. Heran ultrasuodatuksessa tuotettu permeaatti, joka sisälsi pieniä peptidejä, laktoosia ja suoloja, nanosuodatettiin happamassa ja emäksisessä pH:ssa. Emäksisissä oloissa tehdyssä nanosuodatuksessa foulaantumista tapahtui vähemmän ja permeaattivuo oli parempi. Emäksisissä oloissa myös selektiivisyys laktoosin erotuksessa peptideistä oli parempi verrattuna selektiivisyyteen happamissa oloissa.

Water status and gas exchange of umbu plants (Spondias tuberosa Arr. Cam.) propagated by seeds and stem cuttings

The experiment was carried out at the Embrapa Semi-Árido, Petrolina-PE, Brazil, in order to study the physiological responses of umbu plants propagated by seeds and by stem cuttings under water stress conditions, based on leaf water potential and gas exchange measurements. Data were collected in one-year plants established in pots containing 30 kg of a sandy soil and submitted to twenty-day progressive soil water deficit. The evaluations were based on leaf water potential and gas exchange data collection using psychrometric chambers and a portable infra-red gas analyzer, respectively. Plants propagated by seeds maintained a significantly higher water potential, stomatal conductance, transpiration and photosynthesis under decreasing soil water availability. However, plants propagated by stem cuttings were unable to maintain a favorable internal water balance, reflecting negatively on stomatal conductance and leaf gas exchange. This fact is probably because umbu plants propagated by stem cuttings are not prone to formation of root tubers which are reservoirs for water and solutes. Thus, the establishing of umbu plants propagated by stem cuttings must be avoided in areas subjected to soil water deficit.

The endodermis.

A Casparian strip-bearing endodermis is a feature that has been invariably present in the roots of ferns and angiosperms for approximately 400 million years. As the innermost cortical layer that surrounds the central vasculature of roots, the endodermis acts as a barrier to the free diffusion of solutes from the soil into the stele. Based on an enormous body of anatomical and physiological work, the protective endodermal diffusion barrier is thought to be of major importance for many aspects of root biology, reaching from efficient water and nutrient transport to defense against soil-borne pathogens. Until recently, however, we were ignorant about the genes and mechanisms that drive the differentiation of this intricately structured barrier. Recent work in Arabidopsis has now identified the first major players in Casparian strip formation. A mechanistic understanding of endodermal differentiation will finally allow us to specifically interfere with endodermal barrier function and study the effects on plant growth and survival under various stress conditions. Here, I critically review the major findings and models related to endodermal structure and function from other plant species and assess them in light of recent molecular data from Arabidopsis, pointing out where the older, descriptive work can provide a framework and inspiration for further molecular dissection.

Fluid flow processes at basin scale

S u b s u r face fluid flow plays a significant role in many geologic processes and is increasingly being studied in the scale of sedimentary basins and geologic time perspective. Many economic resources such as petroleum and mineral deposits are products of basin scale fluid flow operating over large periods of time. Such ancient flow systems can be studied through analysis of diagenetic alterations and fluid inclusions to constrain physical and chemical conditions of fluids and rocks during their paleohy d r og e o l ogic evolution. Basin simulation models are useful to complement the paleohy d r og e o l ogic record preserved in the rocks and to derive conceptual models on hydraulic basin evolution and generation of economic resources. Different types of fluid flow regimes may evo l ve during basin evolution. The most important with respect to flow rates and capacity for transport of solutes and thermal energy is gr avitational fluid flow driven by the topographic configuration of a basin. Such flow systems require the basin to be elevated above sea level. Consolidational fluid flow is the principal fluid migration process in basins below sea level, caused by loading of compressible rocks. Flow rates of such systems are several orders of magnitude below topogr a p hy driven flow. Howeve r, consolidation may create significant fluid ove rpressure. Episodic dewatering of ove rpressured compart m e n t s m ay cause sudden fluid release with elevated flow velocities and may cause a transient local thermal and chemical disequilibrium betwe e n fluid and rock. This paper gives an ove rv i ew on subsurface fluid flow processes at basin scale and presents examples related to the Pe n e d è s basin in the central Catalan continental margin including the offshore Barcelona half-graben and the compressive South-Pyrenean basin.

Kalvon modifioinnin vaikutus pienten molekyylien nanosuodatukseen

Tässä työssä tutkittiin pienten molekyylien nanosuodatusta kolmella kalvolla. Lappeenrannan teknillisen korkeakoulun laboratoriomittakaavan nanosuodatuslaitteistolla suodatettiin glukoosin, maitohapon ja oktaanihapon vesiliuoksia 0,45 m/s virtausnopeudella. Lisäksi NF 45, NF 270 ja NTR 7450 –kalvoja modifioitiin UV-säteilytyksellä modifiointiaineen kanssa tai ilman. Modifiointiaineina olivat maito- ja oktaanihappo. Kalvon modifioinnilla pyrittiin parantamaan permeabiliteettia ilman retentiohäviöitä. Kirjallisuusosassa käsiteltiin nanosuodatuksen erottumisperiaatteita ja konsentraatiopolarisaation merkitystä liuenneiden aineiden erottumisessa. Lisäksi käsiteltiin kalvon modifioinnin merkitystä suodatuksen parantamiseen ja pienten orgaanisten molekyylien nanosuodatusta. Aluksi suodatettiin glukoosi- ja oktaanihappoliuoksia NF 270 –kalvolla. Glukoosin retentio oli 80% pitoisuudesta riippumatta, mutta oktaanihapon retentio, 70-100%, riippui pitoisuudesta. 100 ppm oktaanihapon pitoisuudessa retentio oli 100% ja suuremmilla pitoisuuksilla alhaisempi. Kun oktaanihappoa suodatettiin modifioimattomilla kalvoilla pH:n funktiona, niin retentiot olivat pH-riippuvaisia. Alhaisilla pH-arvoilla oktaanihapon retentiot olivat lähes nolla ja nousivat jyrkästi pH:ssa 6 siten, että korkeilla pH-arvoilla retentiot olivat yli 80%. Glukoosin suodatuksissa NF 270 –kalvolla modifiointi aina hieman paransi vuota, mutta retentiot huononivat. Oktaanihapon suodatuksissa vuo parani hieman, kun kalvoja (NF 270 ja NTR 7450) oli modifioitu 20 minuuttia UV-säteilytyksellä 100 ppm maitohappoliuoksessa. NTR 7450 –kalvon vuo moninkertaistui modifioimattoman kalvon vuohon verrattuna, kun kalvoa oli UV-säteilytetty 20 minuuttia 2000 ppm maitohappoliuoksessa. Oktaanihapposuodatuksissa retentiot modifioiduilla kalvoilla olivat suurimmat pH-alueella 7-10. Modifioitujen kalvojen permeabiliteetit nousivat jyrkästi pH:ssa 12 kaikilla malliaineilla, mikä viittaa siihen, että modifiointiaine irtosi pH:ssa 12. Toisaalta korkeilla pH-arvoilla kalvo muuttuu avoimemmaksi, joten modifiointiaineen irtoamista ei voitu näiden mittausten perusteella varmentaa. Kalvon modifiointi oli onnistunut, sillä malliainesuodatuksissa havaittiin vuo- ja retentiomuutoksia.

Environmental activity of bacteria degrading pollutants

Une des meilleures techniques pour décontaminer l'environnement d'éléments toxiques (comme par exemple le dibenzofuan, DBF et le 4-chlorophenol, 4CP) déposés par l'homme, à bas coûts et sans le perturber considérablement, est sans doute la biorémédiation, et particulièrement la bioaugmentation. Malheureusement, si plusieurs microorganismes ont démontré leur efficacité à dégrader les composés toxiques en conditions de laboratoire, plusieurs tentatives afin de les utiliser dans l'environnement n'ont pas abouti. Ces échecs sont probablement le résultat des pauvres connaissances des réactions de ces mêmes microorganismes dans l'environnement. L'objectif de mon travail a été de mieux comprendre les réponses de ces bactéries au niveau de leurs gènes lorsqu'elles sont introduites ou prospèrent dans des conditions plus proches de la réalité, mais encore suffisamment contrôlées pour pouvoir élucider leur comportement. Le fait de résister à des conditions de sécheresse a été considéré en tant que facteur clé dans la survie des bactéries amenées à être utilisées pour la biorémédiation; cela implique une série de mécanismes utilisés par la cellule pour faire face au stress hydrique. Le chapitre II, par une approche métagénomique, compare les réactions de trois souches prometteuses pour la biorémédiation (Arthrobacter chlorophenolicus A6, Sphingomonas wittichii RW1 and Pseudomonas veronii 1YdBTEX2) vis-à-vis du stress hydrique simulé en conditions de laboratoire. L'objectif ici est de découvrir et de décrire les stratégies de résistance au stress, communes ou spécifiques, employées par les bactéries. Mes résultats montrent que les trois souches ont des sensibilités différentes au stress hydrique. Entre les traits communs trouvés, il y a une diminution de l'expression des gènes flagellaires ainsi qu'une augmentation de l'expression de solutes compatibles, mais qui sont souche-spécifiques. J'ai étudié plus en détail la réponse génomique de RW1 par rapport aux inoculations ainsi que sa croissance dans le sable contaminé et non-stérile (chapitre III), et je les ai comparé à des cultures en milieu liquide. Mes résultats indiquent que RW1 peut résister efficacement et peut croître dans des conditions presque sèches et peut également dégrader le contaminant (DBF, dans le cas présent) si les pré-cultures sont réalisées dans le même type de contaminant. Par contre, notre hypothèse du chapitre II se révèle fausse car le comportement de RW1 est très diffèrent de celui observé dans des conditions avec stress hydrique induit par l'addition de sel ou de PEG. Plus intéressant, les réponses de RW1 en milieu liquide sont très différentes de celles observées dans le sable, révélant ainsi que cette souche peut reconnaître le milieu dans lequel elle se trouve. Les mêmes expériences en sable contaminé, cette fois-ci avec 4CP, ont été réalisées pour A6 (chapitre IV) dans l'espoir de compléter la comparaison entre le stress hydrique et l'adaptation dans le sol. Malheureusement, il n'a pas été possible d'obtenir d'échantillons de bonne qualité pour les hybridations des microarrays afin d'étudier la réponse transcriptionnelle dans les différentes phases de croissance dans le sable (contaminé ou non). Toutefois, j'ai appris qu'Arthrobacter ne peut pas croitre dans les sols hautement contaminés si les conditions du sol sont très sèches, elles ont en effet besoin de suffisamment d'eau pour dégrader des quantités importantes de 4CP. Ces observations dirigent l'attention sur le fait que les études sur l'efficacité de l'inoculation de bactéries doivent être testées dans des conditions le plus proche possible de l'environnement ciblé, tout comme les concentrations optimales pour l'inoculum. Finalement, nous avons étudié le comportement de A6 dans la phytosphère avec deux dégrés d'humidité (chapitre V). A6 ne montre pas de réaction particulière face aux changements d'humidité, et à nouveau, ces réponses ne peuvent être liées aux changements d'expression des gènes observées dans les conditions de stress hydrique simulées. Cette étude a permis d'identifier la présence de composés phénoliques dans les feuilles qui peuvent potentiellement améliorer les propriétés de dégradation ou qui permettent d'effectuer de façon plus rapide la réaction de dégradation des contaminants dans un processus de phytoremédiation par A. chlorophenolicus.