Vertebrate conserved non coding DNA regions have a high persistence length and a short persistence time.

BACKGROUND: The comparison of complete genomes has revealed surprisingly large numbers of conserved non-protein-coding (CNC) DNA regions. However, the biological function of CNC remains elusive. CNC differ in two aspects from conserved protein-coding regions. They are not conserved across phylum boundaries, and they do not contain readily detectable sub-domains. Here we characterize the persistence length and time of CNC and conserved protein-coding regions in the vertebrate and insect lineages. RESULTS: The persistence length is the length of a genome region over which a certain level of sequence identity is consistently maintained. The persistence time is the evolutionary period during which a conserved region evolves under the same selective constraints.Our main findings are: (i) Insect genomes contain 1.60 times less conserved information than vertebrates; (ii) Vertebrate CNC have a higher persistence length than conserved coding regions or insect CNC; (iii) CNC have shorter persistence times as compared to conserved coding regions in both lineages. CONCLUSION: Higher persistence length of vertebrate CNC indicates that the conserved information in vertebrates and insects is organized in functional elements of different lengths. These findings might be related to the higher morphological complexity of vertebrates and give clues about the structure of active CNC elements.Shorter persistence time might explain the previously puzzling observations of highly conserved CNC within each phylum, and of a lack of conservation between phyla. It suggests that CNC divergence might be a key factor in vertebrate evolution. Further evolutionary studies will help to relate individual CNC to specific developmental processes.

Cultures jeunes et religions en Europe

Après la révolution religieuse des années 60, une nouvelle religiosité est-elle née ? Cette question est au coeur du livre. Il met, en effet, en scène les jeunes des années 80, les filles et les fils de la génération d'après-guerre, celle de Mai 68. Les parents ont pris leurs distances avec les différentes formes institutionnelles de l'autorité, y compris celle des Églises. Ils avaient été laissés libres de s'initier à une voie « spirituelle » : liberté de conscience et autonomie individuelle, deux valeurs clés attachées à la génération d'après-guerre, avaient orienté leur démarche religieuse. Les années 80 constituent de plus un contexte spécifique. Derrière le rideau de l'abondance, les contours de la précarité se dessinent. L'effondrement du mur de Berlin a entraîné celui des certitudes et des points de repère. L'apparition du sida a mis en cause le mythe dominant d'une jeunesse presque éternelle ouvrant sur une société sans âge et sans conflits de génération. Ces événements ont infléchi les quêtes de sens contemporaines. Fruit de la collaboration de vingt-deux sociologues venant de différents pays de l'Union européenne et de la Suisse, l'ouvrage, plutôt que de mettre côte à côte des observations empruntées aux pays concernés, propose des analyses transversales. Il permet ainsi de se faire une idée du changement religieux qui touche l'Europe dans son ensemble et de dégager quelques enjeux communs suscités par l'incertitude ambiante. Partant de l'analyse de la condition des jeunes dans les années 80, l'ouvrage aborde tour à tour la question de leur identité religieuse, celle de leurs systèmes de croyance, puis s'attarde sur les institutions qui ont contribué à leur socialisation religieuse. L'expérience constitue une caractéristique de la vie religieuse contemporaine, alors que la pluralité de l'offre reflète le changement socioculturel. Un chapitre est ainsi consacré à la présentation de quelques trajectoires typiques illustrant la gestion de l'incertitude dans laquelle est plongée la génération en cause. Enfin est abordée la question posée par une jeunesse qui apparaît aujourd'hui dépourvue d'encadrement institutionnel dans le champ religieux comme dans d'autres domaines : cette situation ne traduit-elle pas la crise de reproduction des institutions elles-mêmes ?

Factores asociados a la mortalidad en los pacientes con exacerbación de enfermedad pulmonar obstructiva crónica hospitalizados en servicios de medicina interna

Avaluació dels factors de risc que es relacionen amb la mortalitat en pacients amb exacerbació de la MPOC hospitalitzats en serveis de Medicina Interna en un estudi multicèntric transversal, valorant la possible associació de la mort hospitalitzats amb diferents variables: sociodemogràfiques, tractament abans i durant la hospitalització, característiques clíniques de la MPOC, comorbiditats prèvies, dades clíniques, resultats de laboratori i troballes electrocardiogràfics. Amb 398 pacients, 88,7% eren homes i amb una mitjana de 75 anys, va morir un 5,3%. Trobant associació entre el risc de morir durant l'hospitalització i el diagnòstic previ de pneumònia, malaltia coronària i ACV.

Study on phlebotomine sand fly (Diptera: Psychodidae) fauna in Belo Horizonte, state of Minas Gerais, Brazil

A study on the phlebotomine sand fly fauna in Belo Horizonte city, state of Minas Gerais, Brazil, was carried out. From April 2001 to March 2003, monthly systematic collections were performed in three houses from each of the nine regions of the city, using CDC light traps for four consecutive days. The traps were set into the houses and in peridomestic areas totaling 54 traps. A number of 3871 sand fly specimens of the genera Lutzomyia and Brumptomyia were collected. Sixty eight percent of the specimens were L. longipalpis and 16% L. whitmani, insect vectors of visceral and American cutaneous leishmaniasis, respectively. Environmental factors such as temperature, humidity, and frequency of precipitation suggest that the number of insects increases after rainy periods. During the same period mentioned above, seasonal captures were carried out in parks and green areas of Belo Horizonte, using Shannon trap. A total of 579 phlebotomine sand flies were collected from which 398 (68.7%) were females with the predominance of L. whitmani and L. monticola. Those specimens were used for natural infection examination, by polymerase chain reaction. No Leishmania DNA was present in any of the specimens tested.

"Les homosexuels sont un danger absolu". Homosexualité masculine en Suisse durant la Seconde Guerre mondiale

La Suisse de 1939 à 1945 se caractérise par une relative tolérance envers l'homosexualité. Depuis 1942, le Code pénal suisse dépénalise les relations entre adultes consentant·e·s dans l'ensemble de la Confédération. Zurich accueille la seule association homosexuelle existant au monde durant ces années.¦Cette image d'Épinal a longtemps rendu invisibles les vécus quotidiens de l'homosexualité. Cet ouvrage offre un regard inédit en se fondant sur des sources jusqu'alors inexplorées provenant de la justice militaire. Le Code pénal militaire punit en effet les relations sexuelles entre hommes depuis 1928, et la mobilisation générale amène à un paroxysme permettant de dévoiler un ordinaire habituellement masqué. Quelque 120 affaires sont instruites par la justice militaire avec le concours des polices militaires et civiles, des autorités communales et, parfois, du Service sanitaire de l'armée ou de médecins civils. Ces affaires permettent de mettre en évidence, au-delà de l'interdiction de l'homosexualité au sein de la troupe, une marge de liberté dans les grandes villes, mais aussi la surveillance policière et un opprobre social tenace.¦La relative tolérance envers l'homosexualité s'inscrit comme un compromis entre un progressisme et un conservatisme politique, juridique, voire médical, qui diffère selon les régions du pays ou l'origine sociale des prévenus.

Estado del Arte de los procesos de la Administración Local para la adquisición de TIC. El caso de Guadalajara

L'objecte d'aquest treball és el d'analitzar les pràctiques i estratègies que es segueixen quant a l'adquisició de les Tecnologies de la Informació i la Comunicació (TIC) en l'àmbit de l'Administració Local de la província de Guadalajara i fer una valoració-punts forts i febles-de les mateixes.

Bicc1 links the regulation of cAMP signaling in polycystic kidneys to microRNA-induced gene silencing.

Genetic defects in autosomal-dominant polycystic kidney disease (ADPKD) promote cystic growth of renal tubules, at least in part by stimulating the accumulation of cAMP. How renal cAMP levels are regulated is incompletely understood. We show that cAMP and the expression of its synthetic enzyme adenylate cyclase-6 (AC6) are up-regulated in cystic kidneys of Bicc1(-)(/-) knockout mice. Bicc1, a protein comprising three K homology (KH) domains and a sterile alpha motif (SAM), is expressed in proximal tubules. The KH domains independently bind AC6 mRNA and recruit the miR-125a from Dicer, whereas the SAM domain enables silencing by Argonaute and TNRC6A/GW182. Bicc1 similarly induces silencing of the protein kinase inhibitor PKIα by miR-27a. Thus, Bicc1 is needed on these target mRNAs for silencing by specific miRNAs. The repression of AC6 by Bicc1 might explain why cysts in ADPKD patients preferentially arise from distal tubules.

Incidence of presumed endophthalmitis after intravitreal injection performed in the operating room: a retrospective multicenter study.

PURPOSE: To evaluate the incidence of presumed endophthalmitis (EO) after intravitreal injection (IVI) of anti-vascular endothelial growth factor agents performed in the operating room. METHODS: Retrospective study at 2 Swiss eye hospitals between 2004 and 2012. Hospital records were used to identify patients treated with an IVI of an anti-vascular endothelial growth factor agent between 2004 and 2012 and those treated for EO, defined as any intraocular inflammation treated with intravitreal antibiotics. All IVIs were performed using standard sterile technique in a Swiss Class 1 operating room. No patient received preinjection topical antibiotics. Postinjection topical antibiotics were used only in one hospital. RESULTS: A total of 40,011 IVIs were performed at the 2 centers during the study period. Of the IVIs, ranibizumab was injected in 36,398 (91%), bevacizumab in 3,518 (9%), aflibercept in 89 (0.2%), and pegaptanib in 6 (<0.1%). Three cases of post-IVI presumed EO occurred, yielding a combined incidence of 0.0075% per injection (95% confidence interval: 0.0026-0.0220%) or 1 case per 13,337 IVIs. Two of the three cases of EO occurred in patients using post-IVI antibiotics. All three cases followed ranibizumab injection and were culture negative by anterior chamber tap or vitreous biopsy. CONCLUSION: The risk of EO after IVI performed under the sterile conditions of the operating room was very low.

«Meraviglioso diletto». La traduzione poetica del Cinquecento e le «Metamorfosi di Ovidio» di Giovanni Andrea dellʼAnguilllara

A partire dagli anni Trenta del Cinquecento la traduzione dei poeti classici in lingua volgare comincia a imporsi come un fenomeno di vasta portata nel mercato editoriale italiano. Omero, Virgilio, Stazio, ma soprattutto l'enciclopedico e lascivo Ovidio vengono liberamente riscritti e adattati per il diletto di un pubblico medio, desideroso di ritrovare i poemi antichi nel metro dell'Orlando furioso. Se molte di queste traduzioni non riuscirono a sopravvivere ai mutamenti del gusto, alcune di esse entrarono stabilmente nel canone delle versioni poetiche italiane. È il caso delle Metamorfosi ovidiane riscritte in ottava rima attorno alla metà del secolo da Giovanni Andrea dell'Anguillara, poeta della cerchia farnesiana destinato a vita tormentata ed errabonda. Digressivo, artificioso, magniloquente, l'Ovidio dell'Anguillara (cui è dedicato in gran parte questo volume) otterrà per almeno due secoli un incontrastato successo presso letterati, pittori e musicisti, da Marino a Tiepolo.

Production of full-length cDNA sequences by sequencing and analysis of expressed sequence tags from Schistosoma mansoni

The number of sequences generated by genome projects has increased exponentially, but gene characterization has not followed at the same rate. Sequencing and analysis of full-length cDNAs is an important step in gene characterization that has been used nowadays by several research groups. In this work, we have selected Schistosoma mansoni clones for full-length sequencing, using an algorithm that investigates the presence of the initial methionine in the parasite sequence based on the positions of alignment start between two sequences. BLAST searches to produce such alignments have been performed using parasite expressed sequence tags produced by Minas Gerais Genome Network against sequences from the database Eukaryotic Cluster of Orthologous Groups (KOG). This procedure has allowed the selection of clones representing 398 proteins which have not been deposited as S. mansoni complete CDS in any public database. Dedicated sequencing of 96 of such clones with reads from both 5' and 3' ends has been performed. These reads have been assembled using PHRAP, resulting in the production of 33 full-length sequences that represent novel S. mansoni proteins. These results shall contribute to construct a more complete view of the biology of this important parasite.

Environnements présentant un risque nouveau de contamination des travailleurs par des souches de Staphylococcus aureus résistantes à la méthicilline

L'exposition aux bactéries résistantes aux antibiotiques, en particulier à Staphylococcus aureus résistant à la méthicilline (SARM (1)) sur le lieu de travail, a été montrée comme étant un facteur de risque pour la santé des opérateurs, la fréquence des contacts avec cette bactérie augmentant la probabilité d'en devenir porteur. En plus du fait que les SARM augmentent d'un facteur 4 le risque d'infection chez le porteur, le choix du traitement antibiotique en cas d'infection est fortement limité. C'est pourquoi il est important d'identifier les environnements de travail et les conditions qui favorisent la transmission de cette bactérie de l'animal à l'Homme. La résistance à la méthicilline est conférée au S. aureus par un élément génétique mobile, appelé « staphylococcal cassette chromosome » mec (SCCmec), qui contient le gène de résistance à la méthicilline, mecA. SCCmec a cinq formes (I, II, III, IV and V) qui ont été acquises et intégrées dans le génome de S. aureus lors d'événements indépendants de transfert horizontal. Certaines de ces lignées spécifiquement associées au bétail traité aux antibiotiques (tel que le complexe clonal 398, CC398 (2)), peuvent également coloniser le nez humain. Ainsi, la colonisation nasale ou contamination a été constatée chez 23 à 86 % des agriculteurs et vétérinaires ayant un contact direct avec des porcs, ainsi que chez un à cinq pour cent des personnes ayant une exposition indirecte (par exemple les membres de la famille d'agriculteurs, les visiteurs de la ferme). La pathogénicité du SARM CC398 pour l'Homme a été documentée dans une série de rapports décrivant des cas d'endocardite, d'otomastoïdite et de pneumonie. En outre, le SARM CC398 a été introduit dans des structures de santé (hôpitaux, cliniques, etc.) situées principalement dans les zones d'élevage à forte densité. Si les porcs sont des vecteurs bien connus de transmission de CC398 à l'Homme, d'autres animaux peuvent l'être également, tels que les dindes en Allemagne, comme illustré par le premier article cité dans cette note. Par ailleurs, la propagation de ces souches résistantes aux antibiotiques est inquiétante. Le deuxième article de cette note révèle l'apparition de souches de CC398 dans le lait de vache au Royaume-Uni pays où, jusqu'alors, la surveillance n'en avait pas détecté.

Swallowed topical corticosteroids reduce the risk for long-lasting bolus impactions in eosinophilic esophagitis.

BACKGROUND: Long-lasting food impactions requiring endoscopic bolus removal occur frequently in patients with eosinophilic esophagitis (EoE) and harbor a risk for severe esophageal injuries. We evaluated whether treatment with swallowed topical corticosteroids is able to reduce the risk of occurrence of this complication. METHODS: We analyzed data from the Swiss EoE Cohort Study. Patients with yearly clinic visits, during which standardized assessment of symptoms, endoscopic, histologic, and laboratory findings was carried out, were included. RESULTS: A total of 206 patients (157 males) were analyzed. The median follow-up time was 5 years with a total of 703 visits (mean 3.41 visits/patient). During the follow-up period, 33 patients (16 % of the cohort) experienced 42 impactions requiring endoscopic bolus removal. We evaluated the following factors regarding the outcome 'bolus impaction' by univariate logistic regression modeling: swallowed topical corticosteroid therapy (OR 0.503, 95%-CI 0.255-0.993, P = 0.048), presence of EoE symptoms (OR 1.150, 95%-CI 0.4668-2.835, P = 0.761), esophageal stricture (OR 2.832, 95%-CI 1.508-5.321, P = 0.001), peak eosinophil count >10 eosinophils/HPF (OR 0.724, 95%-CI 0.324-1.621, P = 0.433), blood eosinophilia (OR 1.532, 95%-CI 0.569-4.118, P = 0.398), and esophageal dilation (OR 1.852, 95%-CI 1.034-3.755, P = 0.017). In the multivariate model, the following factors were significantly associated with bolus impaction: swallowed topical corticosteroid therapy (OR 0.411, 95%-CI 0.203-0.835, P = 0.014) and esophageal stricture (OR 2.666, 95%-CI 1.259-5.645, P = 0.01). Increasing frequency of use of swallowed topical steroids was associated with a lower risk for bolus impactions. CONCLUSIONS: Treatment of EoE with swallowed topical corticosteroids significantly reduces the risk for long-lasting bolus impactions.

Granada Virus: a Natural Phlebovirus Reassortant of the Sandfly Fever Naples Serocomplex with Low Seroprevalence in Humans

A new member of the phlebovirus genus, tentatively named Granada virus, was detected in sandflies collected in Spain. By showing the presence of specific neutralizing antibodies in human serum collected in Granada, we show that Granada virus infects humans. The analysis of the complete genome of Granada virus revealed that this agent is likely to be a natural reassortant of the recently described Massilia virus (donor of the long and short segments) with ayet unidentified phlebovirus (donor of the medium segment)

Continuous monitoring of cerebrovascular pressure reactivity in patients with head injury.

OBJECT: Cerebrovascular pressure reactivity is the ability of cerebral vessels to respond to changes in transmural pressure. A cerebrovascular pressure reactivity index (PRx) can be determined as the moving correlation coefficient between mean intracranial pressure (ICP) and mean arterial blood pressure. METHODS: The authors analyzed a database consisting of 398 patients with head injuries who underwent continuous monitoring of cerebrovascular pressure reactivity. In 298 patients, the PRx was compared with a transcranial Doppler ultrasonography assessment of cerebrovascular autoregulation (the mean index [Mx]), in 17 patients with the PET-assessed static rate of autoregulation, and in 22 patients with the cerebral metabolic rate for O(2). Patient outcome was assessed 6 months after injury. RESULTS: There was a positive and significant association between the PRx and Mx (R(2) = 0.36, p < 0.001) and with the static rate of autoregulation (R(2) = 0.31, p = 0.02). A PRx > 0.35 was associated with a high mortality rate (> 50%). The PRx showed significant deterioration in refractory intracranial hypertension, was correlated with outcome, and was able to differentiate patients with good outcome, moderate disability, severe disability, and death. The graph of PRx compared with cerebral perfusion pressure (CPP) indicated a U-shaped curve, suggesting that too low and too high CPP was associated with a disturbance in pressure reactivity. Such an optimal CPP was confirmed in individual cases and a greater difference between current and optimal CPP was associated with worse outcome (for patients who, on average, were treated below optimal CPP [R(2) = 0.53, p < 0.001] and for patients whose mean CPP was above optimal CPP [R(2) = -0.40, p < 0.05]). Following decompressive craniectomy, pressure reactivity initially worsened (median -0.03 [interquartile range -0.13 to 0.06] to 0.14 [interquartile range 0.12-0.22]; p < 0.01) and improved in the later postoperative course. After therapeutic hypothermia, in 17 (70.8%) of 24 patients in whom rewarming exceeded the brain temperature threshold of 37 degrees C, ICP remained stable, but the average PRx increased to 0.32 (p < 0.0001), indicating significant derangement in cerebrovascular reactivity. CONCLUSIONS: The PRx is a secondary index derived from changes in ICP and arterial blood pressure and can be used as a surrogate marker of cerebrovascular impairment. In view of an autoregulation-guided CPP therapy, a continuous determination of a PRx is feasible, but its value has to be evaluated in a prospective controlled trial.