Genetic structure of red-handed howler monkey populations in the fragmented landscape of Eastern Brazilian Amazonia

We genotyped 15 microsatellite loci in order to evaluate the effects of habitat fragmentation, caused by flooding of the Tucuruí reservoir, on the genetic structure of Alouatta belzebul in eastern Amazonia. The analysis included two populations sampled in 1984, representing both margins of the Tocantins river, and three populations sampled 18 years later. Minimal differences in the diversity levels between present-day (Ho = 0.62-0.69 and AR = 6.07-7.21) and pre-flooding (Ho = 0.60-0.62 and AR = 6.27-6.77) populations indicated there was no significant loss of genetic variability, possibly because of successful management strategies applied during the flooding. The changes observed were limited to shifts in the composition of alleles, which presumably reflect the admixture of subpopulations during flooding. Given this, there were significant differences in the Rst values (p = 0.05) in all but one between-site comparison. Both present-day and original populations showed a deficit of heterozygotes, which suggests that this may be typical of the species, at least at a local level, perhaps because of specific ecological characteristics. The relatively large number of private alleles recorded in all populations may be a consequence of the Wahlund effect resulting from population admixture or a process of expansion rather than the loss of rare alleles through genetic drift. Additionally, the levels of genetic variability observed in this study were higher than those reported for other species of Neotropical primates, suggesting good fitness levels in these A. belzebul populations. Regular genetic monitoring of remnant populations, especially on islands, should nevertheless be an integral component of long-term management strategies.

Ecologia da paisagem para avaliação da idoneidade de redes ecológicas, como subsídio para o planejamento territorial

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

O coatá-de-testa-branca (Ateles marginatus) do baixo Rio Tapajós, Pará: distribuição, abundância e conservação

O coatá-de-testa-branca, Ateles marginatus, é uma espécie de primata ameaçada de extinção segundo a UICN. Endêmica da Amazônia brasileira, este status deve-se a uma combinação de uma distribuição geográfica relativamente restrita e às crescentes pressões antrópicas dentro desta área. O presente estudo compreendeu a margem direita do baixo Rio Tapajós, centrado na rodovia BR-163 (Santarém-Cuiabá), região de intensa e antiga ocupação humana. O objetivo principal do estudo foi uma avaliação da distribuição e abundância de A. marginatus dentro desta área, e a análise dos fatores determinantes destas variáveis. Foram visitados 16 sítios, onde moradores foram entrevistados informalmente para a confirmação da presença ou ausência da espécie. Levantamentos populacionais de transecção linear foram realizados em oito sítios, representativos de diferentes graus de fragmentação de hábitat, com um percurso total de 697,6 km. Em dois sítios, agrupamentos de A. marginatus foram monitorados para a obtenção de dados sobre seu comportamento e ecologia. Os resultados indicam que a espécie é ausente de algumas áreas, incluindo lacunas naturais em sua distribuição e uma zona de extinção local, que parece estender até pelo menos 60 km a sul da cidade de Santarém. Um total de 23 espécies de mamíferos não-voadores foram registradas nos levantamentos populacionais, mas a presença de A. marginatus foi confirmada em apenas três sítios. O estudo indica que fragmentos isolados de floresta com menos de cem hectares não suportam populações de A. marginatus. No caso de fragmentos maiores, a presença e abundância da espécie parecem ser influenciadas mais diretamente por fatores antrópicos (caça e extração de madeira). Mesmo em floresta contínua, a espécie parece ser relativamente pouco abundante, mas semelhante a outras populações de Ateles na Amazônia brasileira. Dois grupos, um com oito membros e o outro com pelo menos vinte, foram identificados durante o monitoramento. Como em outros membros do gênero, a formação de subagrupamentos (fissão-fusão), uma proporção relativamente alta de fêmeas na população e uma dieta frugívora são observadas também em A. marginatus. O estudo deixa clara a situação crítica da espécie na região, frente à ocupação humana, e a necessidade urgente tanto de deter o processo de fragmentação de hábitat como de implantar novas unidades de conservação.

Caça em assentamento rural no sul da floresta amazônica

Neste trabalho investiguei os efeitos sobre as populações locais de mamíferos silvestres das atividades de caça praticadas por sitiantes de um assentamento rural na Floresta Amazônica do norte do Estado de Mato Grosso. A segunda parte do Assentamento Japuranã, na qual foi realizado este estudo, foi ocupada ha três anos. Entrevistas formais foram realizadas com 17 moradores. Informações adicionais foram coletadas informalmente, durante todo tipo de contato com assentados durante o período de estudo. A maioria dos assentados são provenientes dos estados do Sul e Sudeste do Brasil. Tipicamente, são trabalhadores rurais, semi-analfabetos, com baixa renda mensal. As principais técnicas de caça praticadas são a "espera", "cachorros" e "excursão". A carne de caça se mostrou um elemento importante na alimentação aparecendo em cerca de um terço das refeições. A atividade de 14 caçadores foi monitorada entre maio e novembro de 2003, neste período eles abateram 113 mamíferos de 17 espécies. Análises da estrutura da população baseadas em crânios foram possíveis para apenas as espécies de porco-do-mato, Tayassu pecari (queixada) e Pecari tajacu (cateto). A análise indicou que a situação da estrutura da população do T. pecari e do P. tajacu é sensível e poderia seriamente ser afetada se a pressão da caça aumentar. Estimou-se a extração de 4096,3 kg de biomassa em uma área de aproximadamente 38 km2, representando um consumo médio de carne de 0,268 kg/pessoa por dia. Levantamentos populacionais de transecção linear foram realizados em três pontos, dois no assentamento e um em uma área vizinha de floresta contínua, como "controle", na qual a caça não é praticada. Num percurso total de 108 km, foram registradas quinze espécies de mamíferos e quatro de aves, com taxas de avistamento relativamente altas em comparação com outros sítios da Amazônia central e oriental. Entretanto, a riqueza de espécies e sua abundância foram maiores em ambos os pontos do assentamento em comparação com o controle. A abundância de ungulados (porcos-do-mato e veados.), os principais alvos dos caçadores, também foi maior no assentamento (ambos os pontos de coleta) em comparação com o controle. Isto sugere claramente que a caça ainda não teve um impacto significativo sobre as populações de mamíferos do assentamento, em termos de sua abundância, pelo menos. A maior parte da atividade de caça foi de subsistência (85,8%), a restante foi para o controle de animais predadores de criações domésticas (8,0%) ou depredatória (6,2%), neste caso, basicamente para a proteção dos cachorros durante perseguições. Apesar desta pressão, a abundância relativa de mamíferos na área do assentamento sugere que a caça seja sustentável a curto prazo (três anos), possivelmente em função da abundância natural de mamíferos na região, e a densidade populacional humana ainda baixa. Entretanto, esta situação pode durar pouco, já que o desmatamento e a conseqüente fragmentação de hábitat na área do assentamento é um processo contínuo, e a caça ocorre sem qualquer controle. Os resultados deste estudos fornecem uma base importante para o desenvolvimento de planos de manejo para a fauna local, envolvendo a comunidade local, órgãos fiscalizadores, o governo e instituições de pesquisa. Serão fundamentais tanto para conservação das espécies como pelo melhor aproveitamento dos recursos de caça pelos sitiantes locais.

Ecosystem fragmentation drives increased diet variation in an endemic livebearing fish of the Bahamas

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Ocorrência e distribuição espacial de mamíferos não-voadores em reflorestamento no sudeste do Brasil

The Conservation in countrysides landscapes only it will be understood in the context of the habitat fragmentation that have been affected the species richness, abundance and distribution. We carried out a mammal survey in platation forest at São Paulo State and 8 we discussed the species richness comparing with others sites surveyed elsewhere. We investigate the landscape influence in the mammal species distribution through spatial analysis. The absence of primate species in plantation forests appear to be a pattern for this environments. The species richness was similar among areas and it was higher when there have contiguous native forest remnants. Moreover the landscape interference don’t appeared affect the mammal species distribution. In overview the landscape connectivity is ameliorate with forest plantation. However, those species more susceptible to extinction in fragmented landscape only can persist when there are contiguous forest fragments from the plantation forests. The management of plantation forests can improves the conservation value for medium and large size mammals species at countryside landscapes.

Home range, movements and diurnal roosts of the endangered thin-spined porcupine, Chaetomys subspinosus (Rodentia: Erethizontidae), in the Brazilian Atlantic Forest

Chaetomys subspinosus is the sole species within the Chaetomyinae subfamily of Caviomorph rodents. This poorly studied porcupine is restricted to the Atlantic Forest in eastern Brazil, where deforestation and habitat fragmentation threaten its survival. Data on the ranging and roosting behavior of C. subspinosus is fairly scarce as it is difficult to observe these behaviors in nature and, consequently, it is very rarely detected during field surveys. We monitored the home ranges of three radio-tagged females over the course of 1 year (2005-2006) and collected data on several aspects of their natural history including movement patterns and the use of diurnal roosts and latrines. The animals were monitored at Parque Estadual Paulo Cesar Vinha, a nature reserve dominated by restinga forests, a subtype of Atlantic Forest occurring on sandy soil. The estimated home range varied little between individuals and was relatively small (mean = 2.14 ha/individual and 1.09 ha/individual using minimum convex polygon and kernel methods, respectively). The animals travelled an average of 147 m/night (range: 21-324 m/night) between two consecutive day roosts. The day roosts were mostly located on vine and liana tangles in the canopy which also aid in connecting the canopy to adjacent trees or the forest floor. Latrines were mostly located near the ground in places heavily protected by spiny bromeliads or by other tangled vegetation. Our data suggests that C. subspinosus has the smallest range among all Neotropical Erethizontids which is likely due to its small size and strictly folivorous diet. Our data also helps explain why C. subspinosus is so difficult to observe in nature: researchers should focus on arboreal masses of tangled vegetation where individuals will normally rest during the day. (C) 2011 Deutsche Gesellschaft fur Saugetierkunde. Published by Elsevier GmbH. All rights reserved.

Spatial-Temporal Variation in Orchid Bee Communities (Hymenoptera: Apidae) in Remnants of Arboreal Caatinga in the Chapada Diamantina Region, State of Bahia, Brazil

The spatial and temporal distribution of organisms is a fundamental aspect of biological communities. The present study focused on three remnants of arboreal Caatinga in northeastern Brazil between May, 2009 and April, 2010. A total of 627 euglossine males were captured in traps baited with artificial aromatic compounds. The specimens belonged to 14 species and four genera: Euglossa Latreille, Eulaema Lepeletier, Eufriesea Cockerell, and Exaerete Hoffmannsegg. Eulaema nigrita Lepeletier (41.6), Euglossa carolina Nem,sio (15.3%), Eulaema marcii Nem,sio (13.6%), and Euglossa melanotricha Moure (12.8%) were the most common species sampled. The distribution of collected specimens per fragment was as follows: BraA(0)na (280 ha)-259 individuals belonging to 14 species; Cambui (179 ha)-161 individuals from eight species; and Pindoba (100 ha)-207 individuals represented by seven species. BraA(0)na had the highest diversity (H'aEuro parts per thousand= 1.91) and estimated species richness. The largest fragment was the main source of the observed variation in species richness and abundance, indicating a non-random pattern of spatial distribution. The analysis of environmental factors indicated that seasonal variation in these factors was the principal determinant of species occurrence and abundance.

Unraveling the drivers of community dissimilarity and species extinction in fragmented landscapes

Communities in fragmented landscapes are often assumed to be structured by species extinction due to habitat loss, which has led to extensive use of the species-area relationship (SAR) in fragmentation studies. However, the use of the SAR presupposes that habitat loss leads species to extinction but does not allow for extinction to be offset by colonization of disturbed-habitat specialists. Moreover, the use of SAR assumes that species richness is a good proxy of community changes in fragmented landscapes. Here, we assessed how communities dwelling in fragmented landscapes are influenced by habitat loss at multiple scales; then we estimated the ability of models ruled by SAR and by species turnover in successfully predicting changes in community composition, and asked whether species richness is indeed an informative community metric. To address these issues, we used a data set consisting of 140 bird species sampled in 65 patches, from six landscapes with different proportions of forest cover in the Atlantic Forest of Brazil. We compared empirical patterns against simulations of over 8 million communities structured by different magnitudes of the power-law SAR and with species-specific rules to assign species to sites. Empirical results showed that, while bird community composition was strongly influenced by habitat loss at the patch and landscape scale, species richness remained largely unaffected. Modeling results revealed that the compositional changes observed in the Atlantic Forest bird metacommunity were only matched by models with either unrealistic magnitudes of the SAR or by models ruled by species turnover, akin to what would be observed along natural gradients. We show that, in the presence of such compositional turnover, species richness is poorly correlated with species extinction, and z values of the SAR strongly underestimate the effects of habitat loss. We suggest that the observed compositional changes are driven by each species reaching its individual extinction threshold: either a threshold of forest cover for species that disappear with habitat loss, or of matrix cover for species that benefit from habitat loss.

The importance of landscape structure for seed dispersal in rain forest fragments

Questions What are the main features of the seed rain in a fragmented Atlantic forest landscape? Can seed rain species attributes (life form, dispersal mode, successional status) relate to the spatial arrangement (size and number of fragments, edge density and presence of corridor) of forest fragments in the landscape? How does the rain forest landscape structure affect the seed rain? Location Atlantic rainforest, Sao Paulo State, Southeastern Brazil. Methods Seed rain samples were collected monthly throughout 1yr, counted, identified and classified according to species dispersal mode, successional status and life form. Seed rain composition was compared with woody species near the seed traps. Relationships between seed rain composition and landscape spatial arrangement (fragment area, presence of corridor, number of fragments in the surroundings, proximity of fragments, and edge density) were tested using canonical correspondence analysis (CCA). Results We collected 20142 seeds belonging to 115 taxa, most of them early successional and anemochorous trees. In general, the seed rain had a species composition distinct from that of the nearby forest tree community. Small isolated fragments contained more seeds, mainly of anemochorous, epiphytic and early-successional species; large fragments showed higher association with zoochorous and late-successional species compared to small fragments. The CCA significantly distinguished the species dispersal mode according to fragment size and isolation, anemochorous species being associated to small and isolated fragments, and zoochorous species to larger areas and fragment aggregation. Nevertheless, a gradient driven by proximity (PROX) and edge density (ED) segregated lianas (in the positive extremity), early successional and epiphyte species (in the negative end); large fragments were positively associated to PROX and ED. Conclusions The results highlight the importance of the size and spatial arrangement of forest patches to promote habitat connectivity and improve the flux of animal-dispersed seeds. Landscape structure controls seed fluxes and affects plant dispersal capacity, potentially influencing the composition and structure of forest fragments. The seed rain composition may be used to assess the effects of landscape spatial structure on plant assemblages, and provide relevant information for biodiversity conservation.

Ground beetle (Carabidae) abundance data from north-eastern Australian rainforest, between June 2008 - January 2010, using pitfall traps

Understanding how the environment influences patterns of diversity is vital for effective conservation management, especially in a changing global climate. While assemblage structure and species richness patterns are often correlated with current environmental factors, historical influences may also be considerable, especially for taxa with poor dispersal abilities. Mountain-top regions throughout tropical rainforests can act as important refugia for taxa characterised by low dispersal capacities such as flightless ground beetles (Carabidae), an ecologically significant predatory group. We surveyed flightless ground beetles along elevational gradients in five different subregions within the Australian Wet Tropics World Heritage Area to investigate (1) whether the diversity and composition of flightless ground beetles are elevationally stratified, and, if so, (2) what environmental factors (other than elevation per se) are associated with these patterns. Generalised linear models and model averaging techniques were used to relate patterns of diversity to environmental factors. Unlike most taxonomic groups, flightless ground beetles increased in species richness and abundance with elevation. Additionally, each subregion consisted of distinct assemblages containing a high level of regional endemic species. Species richness was most strongly positively associated with the historical climatic conditions and negatively associated with severity of recent disturbance (treefalls) and current climatic conditions. Assemblage composition was associated with latitude and current and historical climatic conditions. Our results suggest that distributional patterns of flightless ground beetles are not only likely to be associated with factors that change with elevation (current climatic conditions), but also factors that are independent of elevation (recent disturbance and historical climatic conditions). Variation in historical vegetation stability explained both species richness and assemblage composition patterns, probably reflecting the significance of upland refugia at a geographic time scale. These findings are important for conservation management as upland habitats are under threat from climate change.

Optimización de la técnica RAPD para identificar cv de olivo

Entre las técnicas moleculares, RAPD-PCR es una de las más rápidas y operativamente simple para la caracterización de cultivares. Sin embargo, la confiabilidad de sus resultados radica, en gran parte, en la optimización previa de variables que pueden afectar los patrones de amplificación. Se investigó la repetibilidad de patrones RAPD de olivo bajo diferentes condiciones experimentales. Entre ellas, la pureza del ADN, el tipo de Taq ADN-polimerasa, las concentraciones de Mg+2 y dNTPs, el uso de tejidos atacados por patógenos y el uso de diferentes termocicladores, modificaron los patrones de bandas. Por el contrario, pequeñas modificaciones de la temperatura de apareamiento de cebadores, la concentración del ADN molde y la edad de los tejidos vegetales de los cuales se aisló ADN, no afectaron los patrones amplificados.

Plant communities and soil chemistry of shrub-steppe and pine savannah grasslands in southern British Columbia, Canada

Habitat fragmentation alters the edges of remnant habitat patches. We examined changes in the plant community and soil in relation to distance from edge and edge type for shrub-steppe and pine savannah grasslands in southern British Columbia, Canada. Community composition showed significant nonlinear relationships with distance-to-edge more frequently at paved roads and fruit crops than at dirt roads or control sites (i.e., in the interior of grassland patches), with changes typically extending 25-30 m. More exotic species and fewer native species were found near edges, and edges showed decreased cryptogam cover and increased bare ground, especially near paved roads. The soil factors that best predicted compositional changes were soil pH and Cu/Mn at paved roads, soil pH and nitrogen at fruit crops, and soil resistance at dirt roads. Variation partitioning suggested that both direct (e.g., propagule pressure) and indirect (environmental change) factors mediated edge-related community changes, and provided evidence that nonlinear responses at developed edges were not due to natural gradients. Given the range of grassland patch sizes in this region (many patches 1-100 ha), the edge effects we observed represent a considerable loss of "core" habitat, which must be accounted for in conservation planning and site restoration.

Habitat selection and population regulation in temporally fluctuating environments

Understanding and predicting the distribution of organisms in heterogeneous environments lies at the heart of ecology, and the theory of density-dependent habitat selection (DDHS) provides ecologists with an inferential framework linking evolution and population dynamics. Current theory does not allow for temporal variation in habitat quality, a serious limitation when confronted with real ecological systems. We develop both a stochastic equivalent of the ideal free distribution to study how spatial patterns of habitat use depend on the magnitude and spatial correlation of environmental stochasticity and also a stochastic habitat selection rule. The emerging patterns are confronted with deterministic predictions based on isodar analysis, an established empirical approach to the analysis of habitat selection patterns. Our simulations highlight some consistent patterns of habitat use, indicating that it is possible to make inferences about the habitat selection process based on observed patterns of habitat use. However, isodar analysis gives results that are contingent on the magnitude and spatial correlation of environmental stochasticity. Hence, DDHS is better revealed by a measure of habitat selectivity than by empirical isodars. The detection of DDHS is but a small component of isodar theory, which remains an important conceptual framework for linking evolutionary strategies in behavior and population dynamics.

A broad-scale analysis of links between coastal fisheries production and mangrove extent: A case-study for northeastern Australia

The paradigm that mangroves are critical for sustaining production in coastal fisheries is widely accepted, but empirical evidence has been tenuous. This study showed that links between mangrove extent and coastal fisheries production could be detected for some species at a broad regional scale (1000s of kilometres) on the east coast of Queensland, Australia. The relationships between catch-per-unit-effort for different commercially caught species in four fisheries (trawl, line, net and pot fisheries) and mangrove characteristics, estimated from Landsat images were examined using multiple regression analyses. The species were categorised into three groups based on information on their life history characteristics, namely mangrove-related species (banana prawns Penaeus merguiensis, mud crabs Scylla serrata and barramundi Lates calcarifer), estuarine species (tiger prawns Penaeus esculentus and Penaeus semisulcatus, blue swimmer crabs Portunus pelagicus and blue threadfin Eleutheronema tetradactylum) and offshore species (coral trout Plectropomus spp.). For the mangrove-related species, mangrove characteristics such as area and perimeter accounted for most of the variation in the model; for the non-mangrove estuarine species, latitude was the dominant parameter but some mangrove characteristics (e.g. mangrove perimeter) also made significant contributions to the models. In contrast, for the offshore species, latitude was the dominant variable, with no contribution from mangrove characteristics. This study also identified that finer scale spatial data for the fisheries, to enable catch information to be attributed to a particular catchment, would help to improve our understanding of relationships between mangroves and fisheries production. (C) 2005 Elsevier B.V. All rights reserved.