Sleep desaturation and its relationship to lung function, exercise and quality of life in LAM

Background: Lymphangioleiomyomatosis (LAM) is characterised by progressive airway obstruction and hypoxaemia in young women. Although sleep may trigger hypoxaemia in patients with airway obstruction, it has not been previously investigated in patients with LAM. Methods: Consecutive women with lung biopsy proven LAM and absence of hypoxaemia while awake were evaluated with pulmonary function test, echocardiography, 6-min walk test, overnight full polysomnography, and Short Form 36 health-related quality-of-life questionnaire. Results: Twenty-five patients with (mean +/- SD) age 45 +/- 10 years, SpO(2) awake 95% +/- 2, forced expiratory volume in the first second (median-interquartile) FEV1 (% predicted) 77 (47-90) and carbonic monoxide diffusion capacity, DLCO (%) 55 (34-74) were evaluated. Six-minute walk test distance and minimum SpO(2) (median-interquartile) were, respectively, 447 m (411 -503) and 90% (82-94). Median interquartile apnoea-hypopnoea index was in the normal range 2 (1-5). Fourteen patients (56%) had nocturnal hypoxaemia (10% total sleep time with SpO(2) <90%), and the median sleep time spent with SpO(2) <90% was 136 (13-201) min. Sleep time spent with SpO(2) <90% correlated with the residual volume/total lung capacity ratio (r(s) = 0.5, p: 0.02), DLCO (r(s) = -0.7, p: 0.001), FEV1 (r(s) = -0.6, p: 0.002). Multivariate linear regression model showed that RV/TLC ratio was the most important functional variable related to sleep hypoxaemia. Conclusion: Significant hypoxaemia during sleep is common in LAM patients with normal SpO(2) while awake, especially among those with some degree of hyperinflation in lung function tests. (C) 2011 Published by Elsevier Ltd.

Immunocytochemical localization of acyl-lipid desaturases in cyanobacterial cells: evidence that both thylakoid membranes and cytoplasmic membranes are sites of lipid desaturation.

There are four acyl-lipid desaturases in the cyanobacterium Synechocystis sp. PCC 6803. Each of these desaturases introduces a double bond at a specific position, such as the Delta6, Delta9, Delta12, or omicron3 position, in C18 fatty acids. The localization of the desaturases in cyanobacterial cells was examined immunocytochemically with antibodies raised against synthetic oligopeptides that corresponded to the carboxyl-terminal regions of the desaturases. All four desaturases appeared to be located in the regions of both the cytoplasmic and the thylakoid membranes. These findings suggest that fatty acid desaturation of membrane lipids takes place in the thylakoid membranes as well as in the cytoplasmic membranes.

Respiratory monitoring practices during procedural sedation and analgesia in the cardiac catheterisation laboratory could be improved by using capnography to assess ventilation

Background: Procedural sedation and analgesia (PSA) administered by nurses in the cardiac catheterisation laboratory (CCL) is unlikely to yield serious complications. However, the safety of this practice is dependent on timely identification and treatment of depressed respiratory function. Aim: Describe respiratory monitoring in the CCL. Methods: Retrospective medical record audit of adult patients who underwent a procedure in the CCLs of one private hospital in Brisbane during May and June 2010. An electronic database was used to identify subjects and an audit tool ensured data collection was standardised. Results: Nurses administered PSA during 172/473 (37%) procedures including coronary angiographies, percutaneous coronary interventions, electrophysiology studies, radiofrequency ablations, cardiac pacemakers, implantable cardioverter defibrillators, temporary pacing leads and peripheral vascular interventions. Oxygen saturations were recorded during 160/172 (23%) procedures, respiration rate was recorded during 17/172 (10%) procedures, use of oxygen supplementation was recorded during 40/172 (23%) procedures and 13/172 (7.5%; 95% CI=3.59–11.41%) patients experienced oxygen desaturation. Conclusion: Although oxygen saturation was routinely documented, nurses did not regularly record respiration observations. It is likely that surgical draping and the requirement to minimise radiation exposure interfered with nurses’ ability to observe respiration. Capnography could overcome these barriers to respiration assessment as its accurate measurement of exhaled carbon dioxide coupled with the easily interpretable waveform output it produces, which displays a breath-by-breath account of ventilation, enables identification of respiratory depression in real-time. Results of this audit emphasise the need to ascertain the clinical benefits associated with using capnography to assess ventilation during PSA in the CCL.

Advanced Engineering of Lipid Metabolism in Nicotiana benthamiana Using a Draft Genome and the V2 Viral Silencing-Suppressor Protein

The transient leaf assay in Nicotiana benthamiana is widely used in plant sciences, with one application being the rapid assembly of complex multigene pathways that produce new fatty acid profiles. This rapid and facile assay would be further improved if it were possible to simultaneously overexpress transgenes while accurately silencing endogenes. Here, we report a draft genome resource for N. benthamiana spanning over 75% of the 3.1 Gb haploid genome. This resource revealed a two-member NbFAD2 family, NbFAD2.1 and NbFAD2.2, and quantitative RT-PCR (qRT-PCR) confirmed their expression in leaves. FAD2 activities were silenced using hairpin RNAi as monitored by qRT-PCR and biochemical assays. Silencing of endogenous FAD2 activities was combined with overexpression of transgenes via the use of the alternative viral silencing-suppressor protein, V2, from Tomato yellow leaf curl virus. We show that V2 permits maximal overexpression of transgenes but, crucially, also allows hairpin RNAi to operate unimpeded. To illustrate the efficacy of the V2-based leaf assay system, endogenous lipids were shunted from the desaturation of 18:1 to elongation reactions beginning with 18:1 as substrate. These V2-based leaf assays produced ~50% more elongated fatty acid products than p19-based assays. Analyses of small RNA populations generated from hairpin RNAi against NbFAD2 confirm that the siRNA population is dominated by 21 and 22 nt species derived from the hairpin. Collectively, these new tools expand the range of uses and possibilities for metabolic engineering in transient leaf assays. © 2012 Naim et al.

Apneia obstrutiva do sono e função endotelial em pacientes com hipertensão arterial resistente

A apneia obstrutiva do sono (AOS) é considerada um fator de risco independente para as doenças cardiovasculares. Existem evidências de que indivíduos com apneia obstrutiva do sono podem apresentar elevação nos mediadores inflamatórios, alterações no perfil metabólico, aumento na atividade do sistema nervoso simpático, com consequente elevação da pressão arterial e disfunção endotelial. Nos últimos anos, inúmeros estudos tem apontado a AOS como um dos fatores responsáveis pela hipertensão resistente. O objetivo do estudo foi avaliar a presença da apneia obstrutiva do sono e o comportamento da função endotelial em pacientes com hipertensão resistente, comparando com hipertensos apresentando pressão arterial controlada com até 3 classes diferentes de fármacos anti-hipertensivos. Trata-se de um estudo transversal com 40 pacientes hipertensos: 20 com hipertensão arterial resistente (HAR) e 20 com pressão arterial controlada por medicação (hipertensão arterial controlada; HAC), sem distinção de raça ou gênero, com idade entre 18 e 75 anos. A pressão arterial casual e a monitorização ambulatorial da pressão arterial foram aferidas por método oscilométrico em aparelhos automáticos. A função endotelial e a presença da apneia obstrutiva do sono foram avaliadas através da tonometria arterial periférica pelos equipamentos Endo-PAT2000 e o aparelho portátil Watch-PAT200, respectivamente. A avaliação antropométrica foi realizada através das aferições das circunferências da cintura e do pescoço, índice de massa corporal (IMC), e relação cintura-estatura. A composição corporal foi avaliada por bioimpedância elétrica BIODYNAMICS 450. As análises estatísticas foram realizadas pelo software GraphPad PRISM, versão 6.01. A prevalência de AOS no grupo com HAR foi de 85% (Índice de apneia-hipopneia [AHI]= 12,391,89) e de 80% no grupo com HAC (AHI =20,744,69), sendo mais frequente em homens (p=0,04; OR=3,86; 95% IC 0,99 a 14,52). Os dois grupos apresentaram valores semelhantes das variáveis antropométricas avaliadas. A função endotelial avaliada pelo índice de hiperemia reativa foi similar nos dois grupos (grupo HAR: 1,880,09 vs. grupo HAC: 2,030,09; p=0,28). Apesar do número de dessaturações de oxigênio >4% ter apresentado diferença significativa entre os grupos (grupo HAR: 28,755,08 vs. grupo HAC: 64,1516,97; p=0,04), o tempo total de sono (grupo HAR: 309,515,27 vs. grupo HAC: 323,318,74 min) e a saturação mínima da oxi-hemoglobina (grupo HAR: 87,80,85 vs. grupo HAC: 83,32,37%) não mostraram essa diferença. Considerando todos os pacientes hipertensos, o AHI apresentou correlação significativa com o peso corporal (r=0,51; p=0,0007), o IMC (r=0,41; p=0,007), a circunferência da cintura (r=0,44; p=0,005), a circunferência do pescoço (r=0,38; p=0,01) e a relação cintura-estatura (r=0,39; p=0,01). Os pacientes sem AOS em comparação com os pacientes com AOS, apresentaram risco significativamente menor de apresentar comprometimento da função endotelial (OR=0,17; 95% IC 0,04-0,72; p=0,03). Os achados do presente estudo sugerem que a prevalência de AOS em pacientes com hipertensão resistente é elevada, porém semelhante a de indivíduos com hipertensão controlada. Pacientes com hipertensão resistente e controlada não apresentaram diferenças significativas em relação à função endotelial. A gravidade de AOS no grupo total de hipertensos se associou com maior risco de comprometimento da função endotelial.

Efeitos da restrição energética sobre a apneia do sono, atividade simpática, estresse oxidativo, biomarcadores inflamatórios, função endotelial, adiposidade corporal, perfil metabólico e pressão arterial em pacientes obesos com apneia obstrutiva do sono

A intervenção nutricional para perda ponderal é uma das opções terapêuticas para a apneia obstrutiva do sono (AOS) em pacientes com excesso de adiposidade corporal. No entanto, os efeitos da restrição energética moderada, recomendada pelas diretrizes atuais para o tratamento da obesidade, sobre a AOS ainda não são conhecidos. Avaliar em indivíduos obesos com diagnóstico de AOS os efeitos da restrição energética moderada sobre a adiposidade corporal; gravidade da AOS; pressão arterial; atividade simpática; estresse oxidativo; biomarcadores inflamatórios; perfil metabólico e função endotelial. Ensaio clínico randomizado, com duração de 16 semanas, envolvendo 21 indivíduos obesos grau I ou II, apresentando idade entre 20-55 anos e índice de apneia/hipopneia (IAH) > 5 eventos/h. Os participantes foram randomizados em 2 grupos: 11 no grupo restrição energética (GRE) e 10 no grupo controle (GC). O GRE foi orientado a realizar restrição energética (-800 Kcal/dia) e o GC não modificou sua ingestão alimentar. No início e ao final do estudo, os participantes foram submetidos à avaliação do (a): AOS com o equipamento Watch-PAT 200 incluindo a determinação dos seguintes parâmetros de gravidade da AOS: IAH, saturação mínima de O2, número de dessaturações de O2>4%; adiposidade corporal (peso, % gordura corporal e circunferências da cintura, quadril e pescoço); pressão arterial (PA); atividade do sistema nervoso simpático (concentrações plasmáticas de catecolaminas); biomarcadores inflamatórios (proteína C reativa e adiponectina); estresse oxidativo (malondialdeído); metabolismo glicídico (glicose, insulina e HOMA-IR) e lipídico (colesterol total e frações e triglicerídeos); e função endotelial (índice de hiperemia reativa avaliado com o equipamento Endo-PAT 2000 e moléculas de adesão). A análise estatística foi realizada com o software STATA v. 10. O nível de significância estatística adotado foi p<0,05. Resultados: O GRE, em comparação com o GC, apresentou redução significativamente maior no peso corporal (-5,571,81 vs. 0,431,21kg, p<0,001) e nos demais parâmetros de adiposidade corporal; no IAH (-7,222,79 vs. 0,131,88 eventos/h, p=0,04); no número de dessaturações de O2>4% (-33,7015,57 vs. 1,807,85, p=0,04); nas concentrações plasmáticas de adrenalina (-12,703,00 vs. -1,303,90pg/mL, p=0,04); além de aumento significativamente maior na saturação mínima de O2 (4,601,55 vs. -0,601,42%,p=0,03). O GRE, em comparação com o GC, apresentou maior redução, porém sem alcançar significância estatística, na PA sistólica (-4,231,95 vs. 2,341,39mmHg, p=0,05), na concentração de insulina (-5,111,93 vs. -0,651,28U/mL, p=0,07) e no HOMA-IR (-1,150,49 vs. -0,080,33, p=0,09). Durante o período do estudo, as modificações na adiposidade corporal total e central apresentaram correlação significativa com as variações nos parâmetros de gravidade da AOS; na PA sistólica e diastólica; nas concentrações de insulina e no HOMA-IR, mesmo após ajuste para fatores de confundimento. As modificações na adiposidade corporal central apresentaram associação significativa com as variações nas concentrações de noradrenalina e adiponectina. As modificações nos parâmetros de gravidade da AOS apresentaram associação significativa com as variações nas concentrações séricas da proteína C reativa. Este estudo sugere que em pacientes obesos com AOS a restrição energética moderada é capaz de reduzir a adiposidade corporal total e central, os parâmetros de avaliação da gravidade da AOS e a atividade do sistema nervoso simpático.

植物油脂积累机理和品质改良—利用RNAi改良大豆油脂品质—四合木茎积累三脂酰甘油特征

利用RNAi改良大豆油脂品质 大豆[Glycine max (L.) Merr.]起源于中国，栽培历史悠久，是重要的粮食作物， 同时也是植物油和蛋白的重要来源。随着经济的发展和生活水平的提高，人们不但对大豆的需求量大大增加，同时对大豆的品质也提出了更高的要求。近年来，我国大豆进口量逐年攀升，已远远超过本国生产量。国外转抗除草剂转基因大豆大面积种植大大降低了生产成本，直接影响了我国大豆生产。因此，提高产量和改良品质是当前中国大豆生产所面临的重要课题。基因工程是大豆品种改良更为有效和快速的方法，但是由于历史原因我国的大豆转基因育种与发达国家尚存在一定差距，对我国的大豆生产贡献十分有限。因此，建立高效的大豆转化体系，加强大豆基因工程研究和育种是解决大豆面临困境的关键。 本研究的目的是以我国主要栽培大豆品种（黑农、合丰和东农等）为材料，利用GUS（β-glucuronidase）报告基因和RNAi技术，建立高效的大豆基因转化体系和基因功能研究体系。为大豆产量和品质基因工程改良提供技术手段和理论基础。结果如下： 以大豆下胚轴为外植体，对分生组织产生不定芽的频率进行了研究。培养基中添加高浓度BAP（6-benzylaminopurine）可以诱导外植体分生组织增殖产生不定芽的发生率;在培养基中添加银离子可以明显地促进大豆单个外植体多芽的产生，使得诱导不定芽总数目显著增加;不同基因型大豆再生不定芽能力有着较大区别，黑农44，黑农37，合丰35，合丰39等品种再生能力强;相对于大豆子叶节等再生系统，大豆下胚轴体系具有高效高频的再生特点（总的再生频率高于80%），且重复性好，容易操作。 以大豆下胚轴为外植体，用含有GUS报告基因的根癌农杆菌对其进行遗传转化，并重点对农杆菌菌液浓度、农杆菌侵染时间、乙酰丁香酮（AS）和抗氧化剂浓度等因素对农杆菌大豆转化效率的影响进行了研究。组织化学染色结果显示GUS基因在外植体顶端表达强烈，表达位置主要位于初生芽基部周围的分生组织。 农杆菌浸染时间以 4h 为最佳，此时的GUS瞬时表达频率可达73.0%;培养基中添加浓度为200μmol/L的乙酰丁香酮，可以显著增加GUS瞬时表达频率。抗氧化剂可以显著降低共培养阶段外植体的褐化和坏死率，进而显著提高农杆菌转化效率。用根癌农杆菌转化大豆下胚轴的方法得到了表达GUS基因转基因大豆株系。 利用大豆油酸去饱和酶基因(FAD2-1;Genbank, L43920)在第315-852碱基之间的基因片断构建了反向重复的RNAi表达载体，以农杆菌介导大豆下胚轴转化方法进行转化，并且获得转基因植株。经过PCR，Southern杂交和转基因后代的脂肪酸分析，表明沉默结构已经成功整合到大豆基因组中，并成功抑制了内源基因的表达。与栽培大豆品种相比较，转基因大豆种子的脂肪酸组成发生显著变化，油酸含量由栽培大豆的18.1％增加到71.5％¬-81.9％;亚油酸含量从栽培大豆的46.4％降到了约3.4％。 栽培大豆种子中油酸去饱和比率（ODP, oleic desaturation proportion）为0.76 到 0.84，转基因大豆种子的油酸去饱和比率降为0.06-0.26，表明Δ12-去饱和酶活性降低了74%-94%。上述结果表明，我们构建的RNAi反向重复序列沉默结构高效地抑制了大豆种子FAD2-1基因。 在本研究中，我们通过外源GUS基因的表达和内源FAD2基因的抑制，成功地建立了以大豆下胚轴为外植体的高效农杆菌介导大豆转化体系，并获得了相应的转基因株系。本研究对我国大豆品种基因工程改良以及进一步大豆功能基因组研究有重要参考价值。 四合木茎积累三脂酰甘油特征 四合木(Tetraena mongotica Maxim)是蒺藜科(Zygophyllaceac)四合木属唯一的种，是地球上最具代表性的古老残遗濒危珍稀植物。由于四合木极易燃烧，当地居民称其为“油柴”。 通过对四合木内可能存在的“油”成分进行了分析，我们发现其茎组织含有大量的三脂酰甘油（Triacylglycerols），含量达到46 mg/g DM。在韧皮部中更高，达到90 mg/g DM。我们通过半薄切片对四合木中三脂酰甘油在不同组织的分布和存在形式进行了研究，发现三脂酰甘油主要以油体形式存在于木质部和韧皮部的薄壁组织中。在韧皮部中，几乎所有的薄壁细胞都含有大量的油体。 三脂酰甘油在植物的生长发育中起着非常重要的作用。作为植物生长发育所需的碳源和能量，三脂酰甘油一般储存在植物的种子和果实中。虽然也有关于其在茎和叶中发现的报道，但是含量很少。四合木茎组织含有大量的三脂酰甘油，这种现象可能与四合木茎中存在茎特异油脂合成酶系统有关。因此，克隆相关基因并在作物中表达，将对能源植物的开发具有重要意义。

Design guidelines for granular particles in a conical centrifugal filter

Essential design criteria for successful drying of granular particles in a conical continuous centrifugal filter are developed in a dimensionless fashion. Four criteria are considered: minimum flow thickness (to ensure sliding bulk flow rather than particulate flow), desaturation position, output dryness and basket failure. The criteria are based on idealised physical models of the machine operation and are written explicitly as functions of the basket size lout, spin velocity Ω and input flow rate of powder Qp. The separation of sucrose crystals from liquid molasses is taken as a case study and the successful regime of potential operating points (lout, Ω) is plotted for a wide range of selected values of flow rate Qp. Analytical expressions are given for minimum and maximum values of the three independent parameters (lout, Ω, Qp) as a function of the slurry and basket properties. The viable operating regime for a conical centrifugal filter is thereby obtained as a function of the slurry and basket properties. © 2012 The Institution of Chemical Engineers.

Comparative Analysis of Fatty Acid Desaturases in Cyanobacterial Genomes

Fatty acid desaturases are enzymes that introduce double bonds into the hydrocarbon chains of fatty acids. The fatty acid desaturases from 37 cyanobacterial genomes were identified and classified based upon their conserved histidine-rich motifs and phylogenetic analysis, which help to determine the amounts and distributions of desaturases in cyanobacterial species. The filamentous or N-2-fixing cyanobacteria usually possess more types of fatty acid desaturases than that of unicellular species. The pathway of acyl-lipid desaturation for unicellular marine cyanobacteria Synechococcus and Prochlorococcus differs from that of other cyanobacteria, indicating different phylogenetic histories of the two genera from other cyanobacteria isolated from freshwater, soil, or symbiont. Strain Gloeobacter violaceus PCC 7421 was isolated from calcareous rock and lacks thylakoid membranes. The types and amounts of desaturases of this strain are distinct to those of other cyanobacteria, reflecting the earliest divergence of it from the cyanobacterial line. Three thermophilic unicellular strains, Thermosynechococcus elongatus BP-1 and two Synechococcus Yellowstone species, lack highly unsaturated fatty acids in lipids and contain only one Delta 9 desaturase in contrast with mesophilic strains, which is probably due to their thermic habitats. Thus, the amounts and types of fatty acid desaturases are various among different cyanobacterial species, which may result from the adaption to environments in evolution. Copyright (c) 2008 Xiaoyuan Chi et al.

Molecular cloning and stress-dependent expression of a gene encoding Delta(12)-fatty acid desaturase in the Antarctic microalga Chlorella vulgaris NJ-7

The psychrotrophic Antarctic alga, Chlorella vulgaris NJ-7, grows under an extreme environment of low temperature and high salinity. In an effort to better understand the correlation between fatty acid metabolism and acclimation to Antarctic environment, we analyzed its fatty acid compositions. An extremely high amount of Delta(12) unsaturated fatty acids was identified which prompted us to speculate about the involvement of Delta(12) fatty acid desaturase in the process of acclimation. A full-length cDNA sequence, designated CvFAD2, was isolated from C. vulgaris NJ-7 via reverse transcription polymerase chain reaction (RT-PCR) and RACE methods. Sequence alignment and phylogenetic analysis showed that the gene was homologous to known microsomal Delta(12)-FADs with the conserved histidine motifs. Heterologous expression in yeast was used to confirm the regioselectivity and the function of CvFAD2. Linoleic acid (18:2), normally not present in wild-type yeast cells, was detected in transformants of CvFAD2. The induction of CvFAD2 at an mRNA level under cold stress and high salinity is detected by real-time PCR. The results showed that both temperature and salinity motivated the upregulation of CvFAD2 expression. The accumulation of CvFAD2 increased 2.2-fold at 15A degrees C and 3.9-fold at 4A degrees C compared to the alga at 25A degrees C. Meanwhile a 1.7- and 8.5-fold increase at 3 and 6% NaCl was detected. These data suggest that CvFAD2 is the enzyme responsible for the Delta(12) fatty acids desaturation involved in the adaption to cold and high salinity for Antarctic C. vugaris NJ-7.

Diet-induced changes in lipid and fatty acid composition of Artemia salina

The influence of diet on lipid and fatty acid composition of the brine shrimp Artemia salina nauplii was investigated. Various diets with different lipid composition and fatty acid profiles were fed to nauplii for 2 weeks. The lipid composition of microalgal diets, Isochrysis galbana, Phaeodactylum tricornutum and Nannochloropsis oculata and baker's yeast was analyzed. Newly hatched nauplii were examined before the feeding experiment. It was shown that Artemia was able to incorporate and selectively concentrate some dietary lipids. Depot lipids were more sensitive to changes in the dietary lipid composition than the main structural lipids, polar lipids and sterols. Variations in the content of the lipid classes correlated with stage of development of the animal. The fatty acid composition of the animal varied with that of diet. The concentrations of saturated fatty acids were apparently supported in the nauplii by biosynthesis de novo. The acid 16:1(n-7) originated from the food. The concentration range of n-6 polyunsaturated fatty acids (PUFAs) remained constant through the accumulation from the diet. The proportion of n-3 PUFAs varied with their level in the diet. The dynamics of alteration of 20:5(n-3) content in Artemia fed on Isochrysis, which is poor in this acid, suggested a limited capacity for elongation and desaturation of 18:3(n-3) to 20:5(n-3). None of the diets provided dietary input of 22:6(n-3). (C) 1998 Elsevier Science Inc. All rights reserved.

Regio- and stereo-selective dioxygenase-catalysed cis-dihydroxylation of fjord-region polycyclic arenes

Bacterial dioxygenase-catalysed cis-dihydroxylation of the tetracyclic arenes benzo[c]phenanthrene 2, and the isosteric compounds benzo[b]naphtho[1,2-d]furan 8, and benzo[b]naphtho[1,2-d]thiophene 9, has been found to occur exclusively at fjord-region bonds. The resulting cis-dihydrodiols 7, 10 and 11 were found to be enantiopure and of similar absolute configuration. cis-Dihydroxylation was also observed in the pseudo-fjord region of the 8,9,10,11-tetrahydro-precursors (12 and 13) of benzo[b]naphtho[1,2-d]furan 8, and benzo[b]naphtho[1,2-d]thiophene 9, to yield the corresponding enantiopure hexahydro cis-diols 14 and 15. A novel tandem cis-dihydroxylation and bis-desaturation of the tetrahydro-substrate, tetrahydrobenzo[b]naphtho[1,2-d]thiophene 13, catalysed by biphenyl dioxygenase, was found to yield the fjord-region cis-dihydrodiol 17 of benzo[b]naphtho[1,2-d]thiophene 9.

Long-chain haloalkanes are incorporated into fatty-acids by Rhodococcus rhodochrous NCIMB-13064

The fatty acid composition of the cellular lipids of Rhodococcus rhodochrous NCIMB 13064 grown on various long-chain haloalkanes has been investigated and the influence of halogen substituents, carbon chain length and the position of halogen substitution in the growth substrate explored. Of the total fatty acids present in cells grown on 1-chloro-, 1-bromo- and 1-iodohexadecane, 75, 90 and 81%, respectively, were substituted in the omega-position by the corresponding halogen but only 1% of the fatty acids present after growth on 1-fluorotetradecane were fluorinated in this position. The extent of the halofatty acid incorporation with different halogen substituents in the growth substrate appears to reflect the degree to which oxygenase attack is restricted to the non-halogenated end of the haloalkane. Studies of the fatty acid composition of cells after growth on a series of 1-chloroalkanes containing an even number of carbon atoms between C-10 and C-18 indicated chlorofatty acid incorporation from C-12 to C-18 substrates at levels ranging from 21% with C-12 to 75% with C-16. The chlorofatty acids formed by initial oxidation of the chloroalkane were chain-lengthened or chain-shortened by from two to eight carbon atoms, with accompanying desaturation in some instances. Substantial quantities of a methyl-branched C-19:0 chlorofatty acid were also present with several chloroalkane substrates, When the fatty acid composition of cells after growth on 1-bromoalkanes containing an odd number of carbon atoms between C-11 and C-17 was examined, the incorporation of bromofatty acids was observed with C-13, C-15 and C-17 substrates; a maximum of 76% was recorded for the C-15 bromoalkane. As with even chain-length chloroalkanes, both chain-lengthening and -shortening occurred predominantly via two-carbon units so that most bromoacids present possessed an odd number of carbon atoms, When 1-bromododecane or 2-bromododecane were substrates, overall incorporations of bromofatty acids into the lipid fraction were very similar, demonstrating that the position of halogen substitution in the haloalkane was not critical in determining the extent of incorporation of the haloacids into cellular lipids. The results of the study indicate a mechanism by which degradation products of chlorinated paraffins could enter the biological food chain.