Natural remanent magnetization (NRM) from ODP Site 1263 covering magnetochron C20r and C21n and high-resolution bulk carbon isotope (d13C) records from Sites 702 and 1263

To explore cause and consequences of past climate change, very accurate age models such as those provided by the astronomical timescale (ATS) are needed. Beyond 40 million years the accuracy of the ATS critically depends on the correctness of orbital models and radioisotopic dating techniques. Discrepancies in the age dating of sedimentary successions and the lack of suitable records spanning the middle Eocene have prevented development of a continuous astronomically calibrated geological timescale for the entire Cenozoic Era. We now solve this problem by constructing an independent astrochronological stratigraphy based on Earth's stable 405 kyr eccentricity cycle between 41 and 48 million years ago (Ma) with new data from deep-sea sedimentary sequences in the South Atlantic Ocean. This new link completes the Paleogene astronomical timescale and confirms the intercalibration of radioisotopic and astronomical dating methods back through the Paleocene-Eocene Thermal Maximum (PETM, 55.930 Ma) and the Cretaceous-Paleogene boundary (66.022 Ma). Coupling of the Paleogene 405 kyr cyclostratigraphic frameworks across the middle Eocene further paves the way for extending the ATS into the Mesozoic.

Diatom, ice rafted debris and Neogloboquadrina pachyderma (sinistral) abundance in sediment core OCE326-GGC14

A high-resolution diatom census coupled with other proxy data from Laurentian Fan (LF) provides a detailed description of the last deglaciation, bringing new insight to that period by revealing directly the timing of sea-ice formation and melting. Cold events Heinrich Event 1 (H1) and the Younger Dryas (YD) were multiphase events. H1 (~16.8-15.7 cal kyr BP) was defined by a two-pulse release of icebergs promoting sea-ice formation. Melting of sea-ice after H1 corresponds to a cold and fresh anomaly that may have kept the Bølling colder than the Allerød. At ~13.6 cal kyr BP, a cooling trend culminated with sea-ice formation, marking the YD onset (~12.8 cal kyr BP). The decrease in sea-ice (~12.2 cal kyr BP) led to a YD second phase characterized by very cold winters. However, the contribution of warm water diatoms tends to increase at the same time and the YD gradual end (~11.6 cal kyr BP) contrasts with its abrupt end in Greenland ice cores. The YD cannot be regarded as an event triggered by a fresh water input through the Laurentian Channel since only one weak brief input nearly 1000 yrs after its onset is recorded. Very cold and cool conditions without ice mark the following Preboreal. A northward heat flux between 10.8 and 10.2 cal kyr BP was interrupted by the increased influence of coastal waters likely fed by inland melting. There was no further development of sea-ice or ice-drift then.

Seawater carbonate chemistry, nitrogen concentration and macro community analyse, 2011

Rising anthropogenic CO2 emissions acidify the oceans, and cause changes to seawater carbon chemistry. Bacterial biofilm communities reflect environmental disturbances and may rapidly respond to ocean acidification. This study investigates community composition and activity responses to experimental ocean acidification in biofilms from the Australian Great Barrier Reef. Natural biofilms grown on glass slides were exposed for 11 d to four controlled pCO2 concentrations representing the following scenarios: A) pre-industrial (~300 ppm), B) present-day (~400 ppm), C) mid century (~560 ppm) and D) late century (~1140 ppm). Terminal restriction fragment length polymorphism and clone library analyses of 16S rRNA genes revealed CO2-correlated bacterial community shifts between treatments A, B and D. Observed bacterial community shifts were driven by decreases in the relative abundance of Alphaproteobacteria and increases of Flavobacteriales (Bacteroidetes) at increased CO2 concentrations, indicating pH sensitivity of specific bacterial groups. Elevated pCO2 (C + D) shifted biofilm algal communities and significantly increased C and N contents, yet O2 fluxes, measured using in light and dark incubations, remained unchanged. Our findings suggest that bacterial biofilm communities rapidly adapt and reorganize in response to high pCO2 to maintain activity such as oxygen production.

Response of benthic foraminifera to ocean acidification in their natural sediment environment: a long-term culturing experiment

Calcifying foraminifera are expected to be endangered by ocean acidification; however, the response of a complete community kept in natural sediment and over multiple generations under controlled laboratory conditions has not been constrained to date. During 6 months of incubation, foraminiferal assemblages were kept and treated in natural sediment with pCO2-enriched seawater of 430, 907, 1865 and 3247 µatm pCO2. The fauna was dominated by Ammonia aomoriensis and Elphidium species, whereas agglutinated species were rare. After 6 months of incubation, pore water alkalinity was much higher in comparison to the overlying seawater. Consequently, the saturation state of Omega calc was much higher in the sediment than in the water column in nearly all pCO2 treatments and remained close to saturation. As a result, the life cycle (population density, growth and reproduction) of living assemblages varied markedly during the experimental period, but was largely unaffected by the pCO2 treatments applied. According to the size-frequency distribution, we conclude that foraminifera start reproduction at a diameter of 250 µm. Mortality of living Ammonia aomoriensis was unaffected, whereas size of large and dead tests decreased with elevated pCO2 from 285 µm (pCO2 from 430 to 1865 µatm) to 258 µm (pCO2 3247 µatm). The total organic content of living Ammonia aomoriensis has been determined to be 4.3% of CaCO3 weight. Living individuals had a calcium carbonate production rate of 0.47 g/m**2/a, whereas dead empty tests accumulated a rate of 0.27 g /m**2/a. Although Omega calc was close to 1, approximately 30% of the empty tests of Ammonia aomoriensis showed dissolution features at high pCO2 of 3247 µatm during the last 2 months of incubation. In contrast, tests of the subdominant species, Elphidium incertum, stayed intact. Our results emphasize that the sensitivity to ocean acidification of the endobenthic foraminifera Ammonia aomoriensis in their natural sediment habitat is much lower compared to the experimental response of specimens isolated from the sediment.

Abundance of mesozooplankton in the north-eastern Black Sea during SESRU02 cruise in September 2008

The SESRU_02_mesozooplankton dataset contains data collected in September 2008 at 15 stations located between 37°E and 39.5°E and between 42.4°N and 44.5°N in the north-eastern Black Sea. Samples were collected with a Juday net. Juday net: Vertical tows of a closing Juday net, with mouth area 0.1 m**2, mesh size 180 µm. Samples were taken from different layers. Towing speed: 1m/s. Samples were preserved by a 4% formaldehyde sea water buffered solution. Sampling volume was estimated by multiplying the mouth area with the wire length. Integrated samples were taken from the lower boundary of the oxic zone to the surface, stratified samples were taken according to CTD-profiles: samples were taken from the following depth strata: 1) the upper mixed layer (UML); 2) the layer of high temperature gradients (from the upper boundary of thermocline to the depth of 8 deg C temperature); 3) cold Intermediate layer (CIL) - the layer with the T< 8 deg C; 4) from the depth of sigma theta = 15.8 (oxycline) to the lower boundary of CIL; 5) from the depth of sigma theta = 16.2 to the depth of sigma theta = 15.8. Samples were analysed for zooplankton species and stage composition and abundance. The entire sample or an aliquot (1/2 to ¼) was analyzed under the binocular microscope. Mesozooplankton species and stages were identified and enumerated; meroplankton were identified and enumerated at higher taxonomic level. Taxonomic identification was done at Shirshov Institute of Oceanology using the relevant taxonomic literature (Rose, 1933, Brodsky, 1950 and Internet resources).

Abundance and Biomass from heterotrophic bacteria, Synechococcus, Prochlorococcus and Virus in the eastern Mediteranean Sea in October 2008 during SES_GR2

The HCMR_SES_LAGRANGIAN_GR2_ MICROBIAL PARAMETERS dataset is based on samples collected in the framework of the project SESAME, in the North Aegean Sea during October 2008. The objectives were to measure the standing stocks and calculate the production of the microbial compartment of the food web, describe the vertical distribution pattern and characterize its structure and function through the water column as influenced by the BSW. Heterotrophic bacteria, Synechococcus, Prochlorococcus and Virus abundance: Subsamples for virus, heterotrophic bacteria and cyanobacteria (Synechococcus spp. and Prochlorococcus spp.) counting were analyzed using a FACSCalibur (Becton Dickinson) flow cytometer equipped with a standard laser (488 nm) and filter set and using deionized water as sheath fluid. Fluorescent beads with a diameter of 0.97 µm (Polysciences) were added to each sample as an internal standard, and all parameters were normalized to the beads and expressed as relative units. SYBRGreen I stain (Molecular Probe) was used to stain viral and heterotrophic bacterial DNA. Viruses were counted according to (Brussaard 1984). In order to avoid bulk consentrations of viruses samples we dilluted to Tris-EDTA (pH=8,0) buffer to a final sollution of 1/5 to 1/100. Total abundance and nucleid content classes were calculated using the Paint-A-Gate software (Becton Dickinson). Heterotrophic Nanoflagellate abundance: Subsamples (30-150 ml) were concentrated on 25mm black polycarbonate filters of porosity 0.6?m and stained with DAPI for 10 min (Porter and Feig 1980). Under epifluorescence microscopy heterotrophic nanoflagellates (HNAN) were distinguished using UV and blue excitation and enumerated. Nanoflagellates were classified in size categories and the biovolume was calculated. Ciliate abundance: For ciliate identification and enumeration, 100-3000 ml samples were left for 24h-4d for sedimentation and then observed under an inverted microscope. Ciliates were counted, distinguished into size-classes and major taxonomic groups and identified down to genus or species level where possible (Pitta et al. 2005). Heterotrophic bacteria, Synechococcus, Prochlorococcus bacteria: Subsamples for virus, heterotrophic bacteria and cyanobacteria (Synechococcus spp. and Prochlorococcus spp.) counting were analyzed using a FACSCalibur (Becton Dickinson) flow cytometer equipped with a standard laser (488 nm) and filter set and using deionized water as sheath fluid. Fluorescent beads with a diameter of 0.97 µm (Polysciences) were added to each sample as an internal standard, and all parameters were normalized to the beads and expressed as relative units. SYBRGreen I stain (Molecular Probe) was used to stain viral and heterotrophic bacterial DNA. Viruses were counted according to (Brussaard 1984). In order to avoid bulk consentrations of viruses samples we dilluted to Tris-EDTA (pH=8,0) buffer to a final sollution of 1/5 to 1/100. Total abundance and nucleid content classes were calculated using the Paint-A-Gate software (Becton Dickinson). Abundance data were converted into C biomass using 250 fgC cell-1 (Kana & Glibert 1987) for Synechococcus, 50 fgC cell-1 (Campbell et al. 1994) for Prochlorococcus and 20fgC cell-1 (Lee & Fuhrman 1987) for heterotrophic bacteria. Heterotrophic Nanoflagellate biomass: Subsamples (30-150 ml) were concentrated on 25mm black polycarbonate filters of porosity 0.6µm and stained with DAPI for 10 min (Porter and Feig 1980). Under epifluorescence microscopy heterotrophic nanoflagellates (HNAN) were distinguished using UV and blue excitation and enumerated. Nanoflagellates were classified in size categories and the biovolume was calculated. Abundance data were converted into C biomass using 183 fgC µm**3 (Caron et al. 1995). Ciliate biomass: For ciliate identification and enumeration, 100-3000 ml samples were left for 24h-4d for sedimentation and then observed under an inverted microscope. Ciliates were counted, distinguished into size-classes and major taxonomic groups and identified down to genus or species level where possible (Pitta et al. 2005). Ciliate cell sizes were measured and converted into cell volumes using appropriate geometric formulae using image analysis. For biomass estimation, the conversion factor 190 fgC µm**3 was used (Putt and Stoecker 1989).

Abundance and biomass of near-surface ichthioplankton in the Western Pacific

During Cruise 50 of R/V Vityaz ichthyoplankton in surface waters was collected by a neuston otter trawl for many days in four study areas of the Western Tropical Pacific. Obtained results describe quantitative distribution of ichthyoplankton and small fishes in surface waters. The near-surface layer of the ocean (about 30-40 cm thick) can be considered as a special biotope, its population forms an independent biocoenosis - hyponeuston. Species composition of this community (particularly, composition of fish components) in the tropical zone has been studied to some degree, but structure of the biocoenosis as well as biomass and quantitative relationships of species have not been investigated at all. In this paper the authors discuss the method of collecting surface samples that is quite suitable for quantitative calculations and also present the first results obtained using this method, which described quantitative distribution of ichthyoplankton and small fishes in surface waters.

Abundance of diatoms and foraminifers in the surface sediment layer of the southeastern Laptev Sea shelf

The study of diatoms and benthic foraminifers from the southeastern shelf of the Laptev Sea shows that their most diverse and abundant recent assemblages populate the peripheral underwater part of the Lena River delta representing the marginal filter of the sea. This area is characterized by intense interaction between fresh waters of Siberian rivers and basin seawater, Atlantic one included. Local Late Holocene (~last 2300 years) environments reflect the main regional and global paleoclimatic changes, the Medieval Warm Period (~600-1100 years B.P.) and the Little Ice Age (~100-600 years B.P.) inclusive. In addition, composition and distribution of planktonic foraminifers implies strong influence of Atlantic water during the Holocene optimum ~5100-6200 years B.P.

Abundance of mesozooplankton in the north-eastern Black Sea during SESRU01 cruise in April 2008

The SESRU01_mesozooplankton dataset contains data collected in April 2008 at 19 stations located between 37°E and 39.5°E and between 42.4°N and 44.5°N in the north-eastern Black Sea. Samples were collected with a Juday net (mesh size 180 ?m, mouth area 0.1 m**2). Integrated samples were taken from the lower boundary of the oxic zone to the surface, stratified samples were taken according to CTD-profiles: samples were taken from the following depth strata: 1) the upper mixed layer (UML); 2) the layer of high temperature gradients (from the upper boundary of thermocline to the depth of 8 deg C temperature); 3) cold Intermediate layer (CIL) - the layer with the T< 8 deg C; 4) from the depth of sigma theta = 15.8 (oxycline) to the lower boundary of CIL; 5) from the depth of sigma theta = 16.2 to the depth of sigma theta = 15.8. Samples were analysed for zooplankton species and stage composition and abundance. Juday net: Vertical tows of a closing Juday net, with mouth area 0.1 m**2, mesh size 180µm. Samples were taken from different layers. Towing speed: 1m/s. Samples were preserved by a 4% formaldehyde sea water buffered solution. Sampling volume was estimated by multiplying the mouth area by the wire length. The entire sample or an aliquot (1/2 to1/4) was analyzed under the binocular microscope. Mesozooplankton species and stages were identified and enumerated; meroplankton were identified and enumerated at higher taxonomic level. Taxonomic identification was done at Shirshov Institute of Oceanology using the relevant taxonomic literature (Rose, 1933, Brodsky, 1950, and Internet resources).

Distribution and abundance of nannofossils in DSDP Site 89-585

Late Aptian through middle Eocene nannofossil assemblages were recovered from a continuously cored section at Site 585. Poorly preserved assemblages of low diversity were observed in samples taken throughout both upper Aptian and/or lower Albian sandstone and mudstone and middle Cenomanian to lower Turonian claystone at the base of this section. A 70-m interval barren of nannofossils separates these poorly preserved assemblages from those recovered from an upper Campanian chalk farther uphole. This chalk marks the most significant change in carbonate deposition at this site, and deposition of interbedded zeolitic claystone and sediment of varied nannofossil content proceeded without major interruption until the early Paleocene (Fasciculithus tympaniformis Zone, CP4). A middle Eocene chalk (dated by nannofossils) unconformably overlies lower Paleocene sediment in both Holes 585 and 585A. Only a few interbeds of zeolitic claystone are present within 100 m of nannofossil-rich sediment above this unconformity. This entire interval is cautiously assigned to the Discoaster sublodoensis Zone (CP 12), which indicates a sedimentation rate almost an order of magnitude higher than expected from normal pelagic sedimentation. The most obvious feature of the assemblages examined from these cores is the amount of reworked material. Rare Nannoconus elongatus and Braarudosphaera sp. in several upper Campanian to middle Eocene samples demonstrate the contribution of pelagic material from upslope and, along with other reworked species throughout the Upper Cretaceous samples examined, provide evidence contradictory to an excursion of the calcium compensation depth to deep basinal settings in the western Pacific during the Campanian-Maestrichtian time (Thierstein, 1979). The overwhelming dominance of reworked species in all middle Eocene samples examined and the persistence of these assemblages throughout such a large thickness of sediment suggest that currents that redeposited material intensified at this time and may be associated with the formation of the lower Paleocene/middle Eocene unconformity at this site. A single surface core of calcareous ooze taken from Hole 585A dated as early Pleistocene contains abundant and well-preserved late Miocene and Pliocene species.