DNA alignment and Bayesian trees of partial sequences of COI, COIII and the haemocyanin functional unit f-g of 28 octopod species

Background: Octopods have successfully colonised the world's oceans from the tropics to the poles. Yet, successful persistence in these habitats has required adaptations of their advanced physiological apparatus to compensate impaired oxygen supply. Their oxygen transporter haemocyanin plays a major role in cold tolerance and accordingly has undergone functional modifications to sustain oxygen release at sub-zero temperatures. However, it remains unknown how molecular properties evolved to explain the observed functional adaptations. We thus aimed to assess whether natural selection affected molecular and structural properties of haemocyanin that explains temperature adaptation in octopods. Results: Analysis of 239 partial sequences of the haemocyanin functional units (FU) f and g of 28 octopod species of polar, temperate, subtropical and tropical origin revealed natural selection was acting primarily on charge properties of surface residues. Polar octopods contained haemocyanins with higher net surface charge due to decreased glutamic acid content and higher numbers of basic amino acids. Within the analysed partial sequences, positive selection was present at site 2545, positioned between the active copper binding centre and the FU g surface. At this site, methionine was the dominant amino acid in polar octopods and leucine was dominant in tropical octopods. Sites directly involved in oxygen binding or quaternary interactions were highly conserved within the analysed sequence. Conclusions: This study has provided the first insight into molecular and structural mechanisms that have enabled octopods to sustain oxygen supply from polar to tropical conditions. Our findings imply modulation of oxygen binding via charge-charge interaction at the protein surface, which stabilize quaternary interactions among functional units to reduce detrimental effects of high pH on venous oxygen release. Of the observed partial haemocyanin sequence, residue 2545 formed a close link between the FU g surface and the active centre, suggesting a role as allosteric binding site. The prevalence of methionine at this site in polar octopods, implies regulation of oxygen affinity via increased sensitivity to allosteric metal binding. High sequence conservation of sites directly involved in oxygen binding indicates that functional modifications of octopod haemocyanin rather occur via more subtle mechanisms, as observed in this study.

Age determination and foraminiferal faunas in sediment core MD99-2275

A high-resolution study of palaeoceanographic changes off North Iceland during the time period 8600-5200 cal year BP is based on benthic and planktonic foraminiferal assemblages. The core material (MD99-2275) was obtained from about 440 m water depth on the eastern part of the North Icelandic shelf. Changes in the faunal composition are interpreted to be mainly caused by variations in the strength of the relatively warm, high-salinity Irminger Current and the cold East Icelandic Current, which have been shown to be linked to the climatic changes in the North Atlantic region. Environmental proxies at that site are particularly sensitive to palaeoceanographic changes due to its position close to the marine Polar Front. Benthic assemblages show that relatively cold conditions prevailed at the base of the record. An increase in the influence of Atlantic water masses at the sea floor is seen at around 8400 cal year BP, whereas the surface waters were relatively warm already at 8600 cal year BP. The warming was interrupted by a cold event at around 8100-8000 cal year BP, registered both in the bottom and surface waters and correlated with the so-called 8.2 kyr cooling event. Both the benthic and the planktonic faunal compositions indicate that the Irminger Current had maximum influence in the area between 8000 and about 7300 cal year BP, followed by a gradually decreasing influence through the remaining part of the studied time interval. It is suggested that the contribution of Atlantic water masses from the east and north-east to the Arctic Surface waters off North Iceland increased after around 7000 cal year BP, and that this was further intensified after 6200 cal year BP. At present, the Arctic Surface Water north of Iceland consists of Polar waters, intermittently with direct influence from the East Greenland Current, mixed with Atlantic waters derived from the eastern part of the Nordic Seas. A comparison of the mean values of selected environmental proxies in the interval 8600-5200 cal year BP with the upper part of the same core shows that the water masses north of Iceland were considerably warmer during the Holocene thermal maximum than during the last 2000 cal year. In general, results from core MD99-2275 are in accordance with other marine records from the North Icelandic shelf and the northern North Atlantic region, although a detailed comparison on a centennial time scale is hampered by problems with spatial as well as temporal changes in the marine reservoir ages in the region.

Diatom datums and abundance in ODP Hole 188-1165B and 188-1166A sediments

The biostratigraphic distribution and qualitative relative abundance of Quaternary-Pliocene diatoms from Ocean Drilling Program Leg 188, Sites 1165 (64.380°S, 67.219°E) and 1166 (67.696°S, 74.787°E) offshore from East Antarctica, are documented in this report. The upper ~50 meters below seafloor (mbsf) of Hole 1165B consists of brown diatom-bearing silty clay spanning the upper Pleistocene to lower Pliocene. The diatom stratigraphy indicates a disconformity at ~17.1 mbsf of 0.5- to 0.6-m.y. duration. The integration of biostratigraphic and magnetostratigraphic data identified other disconformities at ~6.0, 14.4, 15.6, and 16.0 mbsf, but the duration of these hiatuses cannot be resolved through diatom biostratigraphy. In Hole 1166A, a narrow interval of diatomaceous Quaternary sediment is identified in the upper 2.92 mbsf and dated biostratigraphically at <0.38 Ma. The remaining Quaternary-Pliocene section is dominated by diamicton, except at ~114 mbsf, where two thin diatomaceous beds are present. The lower bed is ~65 cm thick, 2.5-2.7 to 2.7-3.2 Ma in age, and possibly disconformably overlain by the upper bed, which is ~15 cm thick and 1.8-2.0 to 2.1-2.5 Ma in age. The Pliocene assemblages in Hole 1166A contain components of both Southern Ocean and Antarctic continental shelf (Ross Sea) diatom floras.

Sulphate and d34S in pore waters and d13C, d18O and mineral composition of carbonate nodules from ODP Leg 188 sites

Carbon and oxygen isotopic compositions of authigenic carbonate nodules or layers reflect the diagenetic conditions at the time of nodule growth. The shallowest samples of carbonate nodules and dissolved inorganic carbon of pore water samples beneath the sulfate reduction zone (0-160 meters below seafloor [mbsf]) at Site 1165 have extremely negative d13C values (-50 per mil and -62 per mil, respectively). These negative d13C values indicate nodule formation in association with anaerobic methane oxidation coupled with sulfate reduction. The 34S of residual sulfate at Site 1165 shows only minor 34S enrichment (+6 per mil), even with complete sulfate reduction. This small degree of apparent 34S enrichment is due to extreme "open-system" sulfate reduction, with sulfate abundantly resupplied by diffusion from overlying seawater. Ten calcite nodules from Site 1165 contain minor quartz and feldspar and have d13C values ranging from -49.7 per mil to -8.2 per mil. The nodules with the most negative d13C values currently are at depths of 273 to 350 mbsf and must have precipitated from carbonate largely derived from subsurface anaerobic methane oxidation. The processes of sulfate reduction coupled with methane oxidation in sediments of Hole 1165B are indicated by characteristic concentration and isotopic (d34S and d13C) profiles of dissolved sulfate and bicarbonate. Three siderite nodules from Site 1166 contain feldspar and mica and one has significant carbonate-apatite. The siderite has d13C values ranging from -15.3 per mil to -7.6 per mil. These siderite nodules probably represent early diagenetic carbonate precipitation during microbial methanogenesis.

Biogenic opal and carbonate concentration in late Neogene sediments of ODP Site 114-704

A preliminary composite depth section was generated for Site 704 by splicing Holes 704A and 704B together over the interval 0-350 mbsf (0-9 m.y.). High-resolution carbonate and opal data from the cores were correlated with the calcium and silicon signals from the GST logging run in Hole 704B to identify missing and disturbed intervals in the cores. Paleomagnetic and biostratigraphic age boundaries were then transferred to the composite depth records to obtain an age model, and sedimentation rates were calculated by linear interpolation between datums. Algorithms relating measured dry-bulk density to carbonate content and depth were generated to produce predicted values of density for every sample. Accumulation rates of bulk, carbonate, opal, and terrigenous sediment components were then computed to generate a record of sediment deposition on the Meteor Rise that has a resolution of better than 200,000 yr for the period from 8.6 to 1.0 m.y. From 8.6 to 2.5 m.y., bulk-accumulation rates on the Meteor Rise averaged less than 2 g/cm**2/1000 yr and were dominated by carbonate deposition. The first significant opal deposition (6.0 m.y.) punctuated a brief (less than 0.6 Ma) approach of the Polar Front Zone (PFZ) northward that heralded a period of increasing severity of periodic carbonate dissolution events (terrigenous maxima) that abruptly terminated at 4.8 m.y. (base of the Thvera Subchron), synchronous with the reflooding of the Mediterranean after the Messinian salinity crisis. From 4.8 to 2.5 m.y., carbonate again dominated deposition, and the PFZ was far south except during brief northward excursions bracketing 4.2-3.9, 3.3-2.9, and 2.8-2.7 m.y. At 2.5 m.y., all components of bulk-accumulation rates increased dramatically (up to 15 g/cm2/1000 yr), and by 2.4 m.y., a pattern of alternating, high-amplitude carbonate and opal cyclicity marked the initiation of rapid glacial to interglaci·l swings in the position of the PFZ, synchronous with the "onset" of major Northern Hemisphere glaciation. Both mass-accumulation rates and the amplitude of the cycles decreased by about 2 m.y., but opal accumulation rates remained high up through the base of the Jaramillo (0.98 m.y.). From 1.9 to 1 m.y., the record is characterized by moderate amplitude fluctuations in carbonate and opal. This record of opal accumulation rates is interpreted as a long-term "Polar Front Indicator" that monitors the advance and retreat of the opal-rich PFZ northward (southward) toward (away from) the Meteor Rise in the subantarctic sector of the South Atlantic Ocean. The timing of PFZ migrations in the subantarctic South Atlantic Ocean is remarkably similar to Pliocene-Pleistocene climate records deduced from benthic oxygen isotope records in the North Atlantic Ocean (Raymo et al., 1989, doi:10.1029/PA004i004p00413; Ruddiman et al., 1989, doi:10.1029/PA004i004p00353). These include northward migrations during "cold" intervals containing strong glacial isotope stages (2.4-2.3, 2.1-2.0, 1.95-1.55, 1.45-1.30 m.y. and at about 1.13 and 1.09 m.y.) and southward migrations during "warm" intervals containing weak glacial and/or strong interglacial stages (2.45-2.40, 2.30-2.10, 2.00-1.95, 1.52-1.45, 1.30-1.18, 1.11, and 1.06-0.93 m.y.). Although our preliminary composite record is not continuous (some stages are obviously missing), there is hope that future work will identify these missing intervals in the as yet incomplete Hole 704B and will extend this high-resolution Southern Hemisphere climate record back to 8.6 m.y.

Paleoenvironmental changes in the western Mediterranean since the last glacial maximum: High resolution multiproxy record from the Algero-Balearic basin

The present study uses a multiproxy approach in order to further understand the evolution of climate responses in the western Mediterranean as of the Last Glacial Maximum. Sediments from ODP Site 975 in the Algero-Balearic basin have been analysed at high resolution, both geochemically andmineralogicallly. The resulting data have been used as proxies to establish a sedimentary regime, primary marine productivity, the preservation of the proxies and oxygen conditions. Fluctuations in detrital element concentrations were mainly the consequence of wet/arid oscillations. Productivity has been established using Ba excess, according to which marine productivity appears to have been greatest during cold events Heinrich 1 and Younger Dryas. The S1 time interval was not as marked by increases in productivity as was the eastern Mediterranean. In contrast, the S1 interval was first characterized by a decreasing trend and then by a fall in productivity after the 8.2 ky BP dry-cold event. Since then productivity has remained low. Here we report that there was an important redox event in this basin, probably a consequence of the major oceanographic circulation change occurring in the western Mediterranean at 7.7 ky BP. This circulation change led to reventilation as well as to diagenetic remobilization of redox-sensitive elements and organic matter oxidation. Comparisons between our paleoceanographic reconstruction for this basin and those regarding other Mediterranean basins support the hypothesis that across the Mediterranean there were different types of responses to climate forcing mechanism. The Algero-Balearic basin is likely to be a key area for further understanding of the relationships between the North Atlantic and the eastern Mediterranean basins.

Grain size composition and geochemistry of volcaniclastic sediments in the Lau Basin

Early Pliocene to Pleistocene volcaniclastic sediments recovered during Ocean Drilling Program Leg 135 from Sites 834 to 839 in the Lau Basin show a wide range of chemical and mineralogical compositions extending the spectrum previously known from the Lau Basin, Lau Ridge and Tofua Arc. The following major types of volcaniclastics have been distinguished: (1) primary fallout ashes originating from eruptions on land, (2) epiclastic deposits that resulted from subaerial and submarine eruptions, (3) subaqueous fallout and pyroclastic flow deposits resulting from explosive submarine eruptions, and (4) hyaloclastites resulting from mechanical fragmentation and spalling of chilled margins of submarine pillow tubes and sheet-lava flows. Vitric shards are mostly basaltic andesitic to rhyolitic and broadly follow two major trends in terms of K2O enrichment: a low-K series (LKS) with about 1 wt% K2O at 70 wt% SiO2, and a very low-K series (VLKS) with only about 0.5 wt% K2O at 70 wt% SiO2. Sites 834 and 835 on "old" backarc basin crust, >4.2 and 3.4 m.y. old, comprise LKS rhyolites >3.3 m.y. old. Calc-alkaline basaltic turbidites originating from the Lau Ridge flowed in at 3.3 Ma. In the period from 3.3 to 2.4 Ma basaltic andesitic to rhyolitic, fine-grained LKS and VLKS volcaniclastics were deposited by turbidity currents and subaerial fallout. Three thin, discrete fallout layers (2.4-3.2 m.y. old) with high-K calc-alkaline compositions probably erupted in New Zealand. Volcaniclastics from Site 836, all <0.6 m.y. old, make up 24% of the sediments and comprise local basaltic andesitic to andesitic hyaloclastites with low Ba/Zr ratios of 0.9 to 1.4 and polymict andesitic sediments with Ba/Zr ratios of up to 5.5, containing clasts altered to lower greenschist facies. In Sites 837-839, drilled on young crust (1.8-2.1 m.y. old), volcaniclastics make up 45%-64% of the total sediment. Glass compositions are often bimodal with a mafic and a rhyolitic population. Large-volume rhyolitic, silt- to lapilli-sized volcaniclastics are interpreted as pyroclastic flows from explosive eruptions on a seamount 25-50 km away from the sites. Ba/Zr ratios are 2 to 4, partially overlapping with some Lau Basin basement lavas that show an "arc" signature, and they can reach values >5 in thin volcaniclastic layers <0.6 m.y. old.