Steel and macro-synthetic self-compacting fibre reinforced concrete, experimental study on the long-term deformations

Experimental study on the long-term deformations of the fibre reinforced concrete. Steel and macro-synthetic fibers were used to evaluate the shrinkage, creep, mid-span deflection, cracking and rupture analysis of three different types of samples. At the end the main topics of ACI guidelines were analyzed in order to perform an overview of design.

Modeling and simulation of a synthetic genetic circuit that implements a multicelled behavior in a growing microcolony of E. coli

Synthetic Biology is a relatively new discipline, born at the beginning of the New Millennium, that brings the typical engineering approach (abstraction, modularity and standardization) to biotechnology. These principles aim to tame the extreme complexity of the various components and aid the construction of artificial biological systems with specific functions, usually by means of synthetic genetic circuits implemented in bacteria or simple eukaryotes like yeast. The cell becomes a programmable machine and its low-level programming language is made of strings of DNA. This work was performed in collaboration with researchers of the Department of Electrical Engineering of the University of Washington in Seattle and also with a student of the Corso di Laurea Magistrale in Ingegneria Biomedica at the University of Bologna: Marilisa Cortesi. During the collaboration I contributed to a Synthetic Biology project already started in the Klavins Laboratory. In particular, I modeled and subsequently simulated a synthetic genetic circuit that was ideated for the implementation of a multicelled behavior in a growing bacterial microcolony. In the first chapter the foundations of molecular biology are introduced: structure of the nucleic acids, transcription, translation and methods to regulate gene expression. An introduction to Synthetic Biology completes the section. In the second chapter is described the synthetic genetic circuit that was conceived to make spontaneously emerge, from an isogenic microcolony of bacteria, two different groups of cells, termed leaders and followers. The circuit exploits the intrinsic stochasticity of gene expression and intercellular communication via small molecules to break the symmetry in the phenotype of the microcolony. The four modules of the circuit (coin flipper, sender, receiver and follower) and their interactions are then illustrated. In the third chapter is derived the mathematical representation of the various components of the circuit and the several simplifying assumptions are made explicit. Transcription and translation are modeled as a single step and gene expression is function of the intracellular concentration of the various transcription factors that act on the different promoters of the circuit. A list of the various parameters and a justification for their value closes the chapter. In the fourth chapter are described the main characteristics of the gro simulation environment, developed by the Self Organizing Systems Laboratory of the University of Washington. Then, a sensitivity analysis performed to pinpoint the desirable characteristics of the various genetic components is detailed. The sensitivity analysis makes use of a cost function that is based on the fraction of cells in each one of the different possible states at the end of the simulation and the wanted outcome. Thanks to a particular kind of scatter plot, the parameters are ranked. Starting from an initial condition in which all the parameters assume their nominal value, the ranking suggest which parameter to tune in order to reach the goal. Obtaining a microcolony in which almost all the cells are in the follower state and only a few in the leader state seems to be the most difficult task. A small number of leader cells struggle to produce enough signal to turn the rest of the microcolony in the follower state. It is possible to obtain a microcolony in which the majority of cells are followers by increasing as much as possible the production of signal. Reaching the goal of a microcolony that is split in half between leaders and followers is comparatively easy. The best strategy seems to be increasing slightly the production of the enzyme. To end up with a majority of leaders, instead, it is advisable to increase the basal expression of the coin flipper module. At the end of the chapter, a possible future application of the leader election circuit, the spontaneous formation of spatial patterns in a microcolony, is modeled with the finite state machine formalism. The gro simulations provide insights into the genetic components that are needed to implement the behavior. In particular, since both the examples of pattern formation rely on a local version of Leader Election, a short-range communication system is essential. Moreover, new synthetic components that allow to reliably downregulate the growth rate in specific cells without side effects need to be developed. In the appendix are listed the gro code utilized to simulate the model of the circuit, a script in the Python programming language that was used to split the simulations on a Linux cluster and the Matlab code developed to analyze the data.

Sintesi e caratterizzazione di prepolimeri per resine epossidiche derivanti da fonti rinnovabili e naturali attraverso un processo a basso impatto ambientale

La sostituzione di materie prime provenienti da risorse fossili con biomasse rinnovabili, utilizzando un processo a basso impatto ambientale, è una delle più importanti sfide della "Green Chemistry". Allo stesso tempo, la sintesi di resine epossidiche fornisce la chiave per la realizzazione di materiali ad alto valore aggiunto. Tuttavia, ad oggi, il 90% della produzione di resine epossidiche è basato sull'uso di bisfenolo A, che ha effetti di xenoestrogeno, ed epicloridrina, tossica e cancerogena. Su queste basi, è stata individuata una strategia sintetica per la sintesi di prepolimeri innovativi per resine epossidiche, che utilizza come substrato di reazione diidrossibenzeni di origine naturale ed evita l'uso di epicloridrina e altri reagenti tossici o pericolosi. La suddetta strategia sintetica è basata sulla sequenza: allilazione dei diidrossibenzeni - epossidazione dei doppi legami ottenuti. In questa procedura non vengono utilizzati drastiche condizioni di reazione e il solvente è acqua, con una catalisi di trasferimento di fase o, in aggiunte di acetonitrile, in un sistema bifasico. La resa complessiva dei due “step” dipende dalla posizione dei due ossidrili nei diidrossibenzeni. Il reagente che porta la resa massima è l’idrochinone (1,4 diidrossibenzene), che, come riportato in letteratura, permette la formazione di resine epossidiche con proprietà simili alle resine di epicloridrina e bisfenolo A. The substitution of raw materials from fossil fuels with renewable biomass using a low environmental impact process is one of the greatest challenges of the "Green Chemistry". At the same time, the synthesis of epoxy resins provides the key to the realization of high added value materials. However, 90% of the production of epoxy resins is based on the use of bisphenol A, a xenoestrogen, and epichlorohydrin, that is toxic and carcinogenic. On these bases, a synthetic strategy for the synthesis of innovative prepolymers of epoxy resins, that uses dihydroxybenzenes of natural origin as reaction substrates and avoids the use of epichlorohydrin and other toxic or dangerous reagents has been identified. The above synthetic strategy is based on the sequence: allylation of dihydroxybenzenes - epoxidation of the double bonds obtained. In this procedure, drastic reaction conditions are dismissed and the solvent used is water with a phase transfer catalysis or, in addition, acetonitrile in a biphasic system. The overall yield of the two steps depends on the position of the two hydroxyls of the dihydroxybenzenes. The reagent that leads to the highest yield is hydroquinone (1,4 dihydroxybenzene), which, as reported in literature, allows the formation of epoxy resins with similar properties to the resins from bisphenol A and epichlorohydrin.

Surface-enhanced vibrational techniques for the detection of synthetic organic colorants

The research project object of this thesis is focused on the development of an advanced analytical system based on the combination of an improved thin layer chromatography (TLC) plate coupled with infrared (FTIR) and Raman microscopies for the detection of synthetic dyes. Indeed, the characterization of organic colorants, which are commonly present in mixtures with other components and in a very limited amount, still represents a challenging task in scientific analyses of cultural heritage materials. The approach provides selective spectral fingerprints for each compound, foreseeing the complementary information obtained by micro ATR-RAIRS-FTIR and SERS-Raman analyses, which can be performed on the same separated spot. In particular, silver iodide (AgI) applied on a gold coated slide is proposed as an efficient stationary phase for the discrimination of complex analyte mixtures, such as dyes present in samples of art-historical interest. The gold-AgI-TLC plate shows high performances related both to the chromatographic separation of analytes and to the spectroscopic detection of components. The use of a mid-IR transparent inorganic salt as the stationary phase avoids interferences of the background absorption in FTIR investigations. Moreover, by ATR microscopy measurements performed on the gold-AgI surface, a considerable enhancement in the intensity of spectra is observed. Complementary information can be obtained by Raman analyses, foreseeing a SERS activity of the AgI substrate. The method has been tested for the characterization of a mixture of three synthetic organic colorants widely used in dyeing processes: Brilliant Green (BG1), Rhodamine B (BV10) and Methylene Blue (BB9).

Synthetic studies towards a new fulvestrant analogue

A study towards the synthesis of a new fulvestrant analogue with improved bioavailability was carried out. In this work a twelve-step synthetic route starting from β-estradiol was optimized and a palladium (Pd)-catalyzed endo-selective Heck reaction for the functionalization of an advanced intermediate was investigated.