Abundance and ecologic distribution of the shrimp Rimapenaeus constrictus (Crustacea : Penaeidae) on the northern coast of São Paulo State, Brazil

The abundance and ecologic distribution of the shrimp R. constrictus were compared among three different embayments within the northern coast of São Paulo State (23degreesS, 45degreesW); i.e. Mar Virado (MV), Ubatuba (UBA) and Ubatumirim (UBM). Key environmental factors were monitored for a better understanding of the distributional patterns of this species, namely temperature, salinity, depth, organic matter content and texture of sediments. In each bay, six transects were delimited, four parallel to the coastline and the other two in areas adjacent to rocky shores. Monthly samples were taken over a 2-year period (1998 and 1999), using a shrimp fishing boat equipped with double-rig nets. Abundance data were treated separately according to environmental characteristics. A total of 4978 specimens was obtained; 921 at MV, 1948 at UBA and 2109 at UBM. The spatial distribution of R. constrictus differed among bays. Higher abundance values were recorded at areas where silt and clay comprised less than 70% of the sediment. A more diversified sediment at UBM and UBA apparently favours the establishment of this species in the region. Its abundance also followed a seasonal trend, higher during spring and summer when intrusions of cold South Atlantic Coastal Waters (SACW) are frequent, promoting the migration of this shrimp to more sheltered areas. These results suggest that sediment type and temperature are the most important variables affecting the spatial and seasonal distribution of this species.

Longitudinal distribution and lateral pattern of megalopal settlement and juvenile recruitment of Carcinus maenas (L.) (Brachyura, Portunidae) in the Mira River Estuary, Portugal

Settlement is a critical process in the life history of crabs, and thus affecting the abundance, distribution and structure of estuarine communities. The spatial pattern of settlement of megalopae of the shore crab Carcinus maenas along a longitudinal estuarine gradient (Mira River Estuary, Portugal) was examined, as well as its effects on the juvenile population. To measure megalopal settlement, four replicate collectors were deployed in six equally spaced stations along the estuarine axis. Juveniles were collected on the same locations with a quadrat randomly deployed on the substrate. To assess fine-scale megalopal settlement within a curved region of the estuary, replicate collectors were deployed on both margins along Moinho da Asneira curve. Megalopae settled differently along the six longitudinal points, with a tendency to attenuate their settlement upstream. Within the curved region, megalopae preferentially settled on the left margin collectors, probably due to the weaker velocity speeds felt on this margin. Concerning the overall juvenile density, there were significant differences among the stations distributed along the estuary, but they did no reflect a longitudinal dispersion attenuation pattern. Size-frequency distribution of the juvenile population showed that the average size is higher on the left margin. Recruits (carapace length between 1.0 mm and 3.4 mm) were more abundant on the upstream stations. Density of early juveniles (3.4 mm-6.5 mm) and juveniles (6.5 mm-10 mm) was more stable throughout the estuary axis than that of recruits. This distribution pattern may result from tidal excursion processes or mechanisms to avoid biotic interactions, such as predation and competition. (c) 2006 Elsevier Ltd. All rights reserved.

Abundance of sedentary consumers and sessile organisms along the wave exposure gradient of subtropical rocky shores of the south-west Atlantic

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Diel variation in abundance and size of the seabob shrimp Xiphopenaeus kroyeri (Crustacea, Penaeoidea) in the Ubatuba region, Southeastern Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Diel variation in abundance and size of the seabob shrimp Xiphopenaeus kroyeri in the Ubatuba region, Southeastern Brazil

The objective of the present study was to analyze diel variation in the abundance and size of the seabob shrimp Xiphopenaeus kroyeri in the Ubatuba region, state of São Paulo, during the year 2000. In each season of the year, collections were made in the day and at night on 9 transects at depths ranging from 2 to 40 m. The estimated shrimp amount was of 28,878 individuals. Although the catch rate was higher during the day (15,853 shrimp), this did not differ significantly from the catch at night (13,025). The catch rate was higher in daytime on most transects, but was higher at night at locations where fine and very fine sand predominated. The majority of juveniles were caught during the day. The mean size (CL) was 14.43 ± 4.02 mm for day and 14.82 ± 4.28 mm for night samples, and the difference was significant (Student’s t-test, df = 2, 429, t = 2.27, p = 0.02). The largest individuals were caught during the night. None of the three models that have been proposed in the literature to account for differences in the diurnal catch pattern of penaeid species can be applied to X. kroyeri. Our results provide evidence that sediment type not only influenced the catch rate in the analyzed periods, but also determined which models might fit the behavior of this species.

The fish community of the Sorocaba River Basin in different habitats (State of São Paulo, Brazil)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Distribuição temporal e espacial de anuros em área de Pampa, Santa Maria, RS

Este estudo teve como objetivo determinar a riqueza, a constância de ocorrência, os modos reprodutivos, o padrão de distribuição da abundância, a temporada de vocalização e testar a correlação das variáveis climáticas sobre a atividade de vocalização dos anuros em uma região do Bioma Pampa, Santa Maria, Rio Grande do Sul. Durante o período de novembro de 2001 a outubro de 2002 foram realizadas coletas mensais empregando o método de busca em sítio de reprodução e exame de exemplares depositados na Coleção Herpetológica do Setor de Zoologia da Universidade Federal de Santa Maria (UFSM) (ZUFSM). Foi registrada a ocorrência de 25 espécies de anuros. A anurofauna registrada corresponde a 30% das espécies encontradas no Rio Grande do Sul e normalmente está associada a áreas abertas encontradas no estado e em países vizinhos. Foram registrados quatro modos reprodutivos: modo 1 (14 espécies; 58,3%); modos 11 e 30 (nove espécies; 37,5%) e modo 24 (uma espécie; 4,2%). A baixa diversificação de modos reprodutivos provavelmente está relacionada à homogeneidade do hábitat primariamente campestre. A maior parte das espécies mostrou-se constante ou acessória na área estudada e o padrão de distribuição da abundância das espécies apresentou ajuste aos modelos Broken Stick e Log-normal, caracterizados pela homogeneidade na distribuição da abundância das espécies. A maioria das espécies apresentou grande plasticidade na ocupação de hábitats, mas poucas foram plásticas no uso dos sítios de vocalização. Houve correlação positiva, ainda que fraca, da riqueza de espécies com a precipitação mensal acumulada e da abundância com a temperatura média máxima. As correlações obtidas indicaram que na área estudada a temperatura parece atuar mais sobre a abundância de machos em atividade de vocalização e a precipitação sobre a riqueza, apesar da riqueza de espécies ser significativamente maior durante o período mais quente do ano. Estes resultados revelaram que as variáveis climatológicas testadas explicaram muito pouco da ocorrência sazonal das espécies, assim a influência de outras variáveis ambientais merece ser testada em estudos futuros.

The contribution of transposable elements to Bos taurus gene structure

In an effort to identify the contribution of TEs to bovine genome evolution, the abundance, distribution and insertional orientation of TEs were examined in all bovine nuclear genes identified in sequence build 2.1 (released October 11, 2005). Exons, introns and promoter segments (3 kb upstream the transcription initiation sites) were screened with the RepeatMasker program. Most of the genes analyzed contained TE insertions, with an average of 18 insertions/gene. The majority of TE insertions identified were classified as retrotransposons and the remainder classified as DNA transposons. TEs were inserted into exons and promoter segments infrequently, while insertion into intron sequences was strikingly more abundant. The contribution of TEs to exon sequence is of great interest because TE insertions can directly influence the phenotype by altering protein sequences. We report six cases where the entire exon sequences of bovine genes are apparently derived from TEs and one of them, the insertion of Charlie into a bovine transcript similar to the zinc finger 452 gene is analyzed in detail. The great similarity of the TE-cassette sequence to the ZNF452 protein and phylogenetic relationship strongly suggests the occurrence of Charlie 10 DNA exaptation in the mammalian zinc finger 452 gene. (c) 2006 Published by Elsevier B.V.

Persistence and stability of cichlid assemblages in neotropical floodplain lagoons

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Aranhas (Arachnida, Araneae) sobre bromélias em um remanescente de Mata Atlântica no estado do Espírito Santo: associações específicas, arquitetura das bromélias e estrutura de comunidades

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Algas e cianobactérias aerofíticas de fragmentos de floresta estacional semidecidual no noroeste paulista

Pós-graduação em Ciências Biológicas (Biologia Vegetal) - IBRC

Agregação e viés em medidas de diversidade: uma abordagem computacional intensiva

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Computer intensive methods for controlling bias in a generalized species diversity index

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Bromeliads as biodiversity amplifiers and habitat segregation of spider communities in a Neotropical rainforest

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Estimating abundance and spatial distribution patterns of the bubble crab Dotilla fenestrata (Crustacea : Brachyura)

The bubble crab Dotilla fenestrata forms very dense populations on the sand flats of the eastern coast of Inhaca Island, Mozambique, making it an interesting biological model to examine spatial distribution patterns and test the relative efficiency of common sampling methods. Due to its apparent ecological importance within the sandy intertidal community, understanding the factors ruling the dynamics of Dotilla populations is also a key issue. In this study, different techniques of estimating crab density are described, and the trends of spatial distribution of the different population categories are shown. The studied populations are arranged in discrete patches located at the well-drained crests of nearly parallel mega sand ripples. For a given sample size, there was an obvious gain in precision by using a stratified random sampling technique, considering discrete patches as strata, compared to the simple random design. Density average and variance differed considerably among patches since juveniles and ovigerous females were found clumped, with higher densities at the lower and upper shore levels, respectively. Burrow counting was found to be an adequate method for large-scale sampling, although consistently underestimating actual crab density by nearly half. Regression analyses suggested that crabs smaller than 2.9 mm carapace width tend to be undetected in visual burrow counts. A visual survey of sampling plots over several patches of a large Dotilla population showed that crab density varied in an interesting oscillating pattern, apparently following the topography of the sand flat. Patches extending to the lower shore contained higher densities than those mostly covering the higher shore. Within-patch density variability also pointed to the same trend, but the density increment towards the lowest shore level varied greatly among the patches compared.