Impact of sewage sludge on the soil bacterial communities by DNA microarray analysis

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Fractal dimension and anisotropy of soil CO2 emission in an agricultural field during fallow

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

The influence of the caruncle on the germination of castor seed under high salinity or low soil water content

The caruncle is a structure present in the micropylar region of Euphorbiaceae seeds. This structure has the ecological function of promoting seed dispersal by ants (myrmecochory), but it is debated whether it also has an agronomical importance influencing seed germination. The influence of the caruncle on castor (Ricinus communis) seed germination was evaluated under low soil water content and high soil salinity. Seeds were germinated at soil water storage capacities varying from 22 to 50% and salinities (NaCl) varying from 0 to 10 dS m(-1) The germination (%) increased following the increments in soil moisture. hut the caruncle had no influence on this process at any moisture level. In one genotype. more root dry mass was produced when caruncle was excised. Increasing salinity reduced the percentage and speed of germination of castor seeds, but no influence of caruncle was detected. No evidence of caruncle influencing castor seed germination was found under low soil water content and high salinity.

Effects of soil water deficit and nitrogen nutrition on water relations and photosynthesis of pot-grown Coffea canephora Pierre

Coffea canephora plants (clone INCAPER-99) were submitted to low N (LN) or high N (HN) applications and two watering regimes (daily irrigation and irrigation every 5 days for a month). Although water potential was not altered significantly by N, HN plants showed higher relative water content than did LN plants under water deficit. Only HN plants exhibited some ability for osmotic adjustment. Plants from both N treatments increased their cell wall rigidity under drought, with a more pronounced augmentation in HN plants. In well-watered plants, carbon assimilation rate increased with increasing N while stomatal conductance did not respond to N supply. Under drought conditions, carbon assimilation decreased by 68-80% compared to well-watered plants, whereas stomatal conductance and transpiration rate declined by 35% irrespective of the N applications. Stable carbon isotope analysis, combined with leaf gas exchange measurements, indicated that regardless of the watering treatments, N increased the long-term water use efficiency through changes in carbon assimilation with little or no effect on stomatal behaviour.

Quantification of uncertainties associated with space-time estimates of short-term soil CO2 emissions in a sugar cane area

The characterization of soil CO2 emissions (FCO2) is important for the study of the global carbon cycle. This phenomenon presents great variability in space and time, a characteristic that makes attempts at modeling and forecasting FCO2 challenging. Although spatial estimates have been performed in several studies, the association of these estimates with the uncertainties inherent in the estimation procedures is not considered. This study aimed to evaluate the local, spatial, local-temporal and spatial-temporal uncertainties of short-term FCO2 after harvest period in a sugar cane area. The FCO2 was featured in a sampling grid of 60m×60m containing 127 points with minimum separation distances from 0.5 to 10m between points. The FCO2 was evaluated 7 times within a total period of 10 days. The variability of FCO2 was described by descriptive statistics and variogram modeling. To calculate the uncertainties, 300 realizations made by sequential Gaussian simulation were considered. Local uncertainties were evaluated using the probability values exceeding certain critical thresholds, while the spatial uncertainties considering the probability of regions with high probability values together exceed the adopted limits. Using the daily uncertainties, the local-spatial and spatial-temporal uncertainty (Ftemp) was obtained. The daily and mean emissions showed a variability structure that was described by spherical and Gaussian models. The differences between the daily maps were related to variations in the magnitude of FCO2, covering mean values ranging from 1.28±0.11μmolm-2s-1 (F197) to 1.82±0.07μmolm-2s-1 (F195). The Ftemp showed low spatial uncertainty coupled with high local uncertainty estimates. The average emission showed great spatial uncertainty of the simulated values. The evaluation of uncertainties associated with the knowledge of temporal and spatial variability is an important tool for understanding many phenomena over time, such as the quantification of greenhouse gases or the identification of areas with high crop productivity. © 2013 Elsevier B.V.

Soil erodibility assessment in a pasture and forest remnant using the inderbitzen device

Brazil has the largest cattle herd in the world with approximately 200 million head. An important feature of the Brazilian cattle industry is that most of its herd is raised on pasture, which constitutes one of the most economical and practical ways to produce and provide food for cattle. However, this production model is mishandled and can lead to soil degradation. Maintaining soil quality is essential for the conservation of natural ecosystems and the areas of production, thus soil quality improves the conditions for biogeochemical cycles. In this context, the objective of this study was to develop a device for testing the Inderbitzen way of assessing soil erodibility in two situations of usage and occupation. Therefore, one area was used as a sample collection occupied by grazing and the other as a forest fragment; both located in the city of Sorocaba in Sao Paulo State, Brazil. Thus, we concluded that the proposed device - the Inderbitzen - proved capable of assessing soil erodibility of the pasture and remnant forest. Accordingly, there was a tendency for a smaller loss of forest soils in the remnant when compared to the degraded pasture. The greatest resistance of the soil erosion in the forest remnant may be associated with the amount of organic matter released by the forest litter in all its diversity, influencing the quality of the structure of aggregates. © 2013 WIT Press.

Development and Biotechnological Application of a Novel Endoxylanase Family GH10 Identified from Sugarcane Soil Metagenome

Metagenomics has been widely employed for discovery of new enzymes and pathways to conversion of lignocellulosic biomass to fuels and chemicals. In this context, the present study reports the isolation, recombinant expression, biochemical and structural characterization of a novel endoxylanase family GH10 (SCXyl) identified from sugarcane soil metagenome. The recombinant SCXyl was highly active against xylan from beechwood and showed optimal enzyme activity at pH 6,0 and 45°C. The crystal structure was solved at 2.75 Å resolution, revealing the classical (β/α)8-barrel fold with a conserved active-site pocket and an inherent flexibility of the Trp281-Arg291 loop that can adopt distinct conformational states depending on substrate binding. The capillary electrophoresis analysis of degradation products evidenced that the enzyme displays unusual capacity to degrade small xylooligosaccharides, such as xylotriose, which is consistent to the hydrophobic contacts at the +1 subsite and low-binding energies of subsites that are distant from the site of hydrolysis. The main reaction products from xylan polymers and phosphoric acid-pretreated sugarcane bagasse (PASB) were xylooligosaccharides, but, after a longer incubation time, xylobiose and xylose were also formed. Moreover, the use of SCXyl as pre-treatment step of PASB, prior to the addition of commercial cellulolytic cocktail, significantly enhanced the saccharification process. All these characteristics demonstrate the advantageous application of this enzyme in several biotechnological processes in food and feed industry and also in the enzymatic pretreatment of biomass for feedstock and ethanol production. © 2013 Alvarez et al.

Aspects of Mechanical Behavior and Modeling of a Tropical Unsaturated Soil

The research studies the applicability of two elastoplastic models for the collapse prediction of the lateritic soil profile from Southeastern Brazil. These tropical soils have peculiar geotechnical behavior, due to their mineralogical composition and porous structure coming from intense process of formation. Two elastoplastic models were analyzed: the Barcelona Basic Model (BBM) and another one based on BBM, however developed for tropical soils. Oedometric tests with suction control were performed at three distinct depths of the soil profile. The BBM was not suitable for the upper layer of the soil profile, because BBM considers the compressible behavior of the soil in function of the reduction of the elastoplastic compressibility index with the increase of the matric suction. The model developed for tropical soils showed better suited to the compressible behavior of the soil profile, resulting in good prediction of the collapse potential, mainly by accepting increasing values of the elastoplastic compressibility index of the soil profile with the matric suction rise. © 2013 Springer Science+Business Media Dordrecht.

Current status, uncertainty and future needs in soil organic carbon monitoring

Increasing human demands on soil-derived ecosystem services requires reliable data on global soil resources for sustainable development. The soil organic carbon (SOC) pool is a key indicator of soil quality as it affects essential biological, chemical and physical soil functions such as nutrient cycling, pesticide and water retention, and soil structure maintenance. However, information on the SOC pool, and its temporal and spatial dynamics is unbalanced. Even in well-studied regions with a pronounced interest in environmental issues information on soil carbon (C) is inconsistent. Several activities for the compilation of global soil C data are under way. However, different approaches for soil sampling and chemical analyses make even regional comparisons highly uncertain. Often, the procedures used so far have not allowed the reliable estimation of the total SOC pool, partly because the available knowledge is focused on not clearly defined upper soil horizons and the contribution of subsoil to SOC stocks has been less considered. Even more difficult is quantifying SOC pool changes over time. SOC consists of variable amounts of labile and recalcitrant molecules of plant, and microbial and animal origin that are often operationally defined. A comprehensively active soil expert community needs to agree on protocols of soil surveying and lab procedures towards reliable SOC pool estimates. Already established long-term ecological research sites, where SOC changes are quantified and the underlying mechanisms are investigated, are potentially the backbones for regional, national, and international SOC monitoring programs. © 2013 Elsevier B.V.

Do woody and herbaceous species compete for soil water across topographic gradients? Evidence for niche partitioning in a Neotropical savanna

Savannas are characterized by sparsely distributed woody species within a continuous herbaceous cover, composed mainly by grasses and small eudicot herbs. This vegetation structure is variable across the landscape, with shifts from open grassland to savanna woodland determined by factors that control tree density. These shifts often appear coupled with environmental variations, such as topographic gradients. Here we investigated whether herbaceous and woody savanna species differ in their use of soil water along a topographic gradient of about 110 m, spanning several vegetation physiognomies generally associated with Neotropical savannas. We measured the delta H-2 and delta O-18 signatures of plants, soils, groundwater and rainfall, determining the depth of plant water uptake and examining variations in water uptake patterns along the gradient. We found that woody species use water from deeper soil layers compared to herbaceous species, regardless of their position in the topographic gradient. However, the presence of a shallow water table restricted plant water uptake to the superficial soil layers at lower portions of the gradient. We confirmed that woody and herbaceous species are plastic with respect to their water use strategy, which determines niche partitioning across topographic gradients. Abiotic factors such as groundwater level, affect water uptake patterns independently of plant growth form, reinforcing vegetation gradients by exerting divergent selective pressures across topographic gradients. (C) 2013 SAAB. Published by Elsevier B.V. All rights reserved.

Population structure of a native and an alien species of snail in an urban area of the Atlantic Rainforest

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Soil erodibility assessment in a pasture and forest remnant using the Indrbitzen device

Brazil has the largest cattle herd in the world with approximately 200 million head. An important feature of the Brazilian cattle industry is that most of its herd is raised on pasture, which constitutes one of the most economical and practical ways to produce and provide food for cattle. However, this production model is mishandled and can lead to soil degradation. Maintaining soil quality is essential for the conservation of natural ecosystems and the areas of production, thus soil quality improves the conditions for biogeochemical cycles. In this context, the objective of this study was to develop a device for testing the Inderbitzen way of assessing soil erodibility in two situations of usage and occupation. Therefore, one area was used as a sample collection occupied by grazing and the other as a forest fragment; both located in the city of Sorocaba in Sao Paulo State, Brazil. Thus, we concluded that the proposed device – the Inderbitzen – proved capable of assessing soil erodibility of the pasture and remnant forest. Accordingly, there was a tendency for a smaller loss of forest soils in the remnant when compared to the degraded pasture. The greatest resistance of the soil erosion in the forest remnant may be associated with the amount of organic matter released by the forest litter in all its diversity, influencing the quality of the structure of aggregates. Keywords: erosion, forest remnant, degraded pasture, Inderbitzen test.

Novel inorganic pyrophosphatase from soil metagenomic and family and subfamily prediction

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Biodegradation of PP and PE blended with PHBV in soil samples

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Off-line TMAH-GC/MS and NMR characterization of humic substances extracted from river sediments of northwestern Sao Paulo under different soil uses

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)