Novel inorganic pyrophosphatase from soil metagenomic and family and subfamily prediction


Autoria(s): Rodrigues, Gisele Regina; Val-Moraes, Silvana Pompeia; Lemos, Eliana Gertrudes Macedo; Pizauro Júnior, Joao Martins
Contribuinte(s)

Universidade Estadual Paulista (UNESP)

Data(s)

15/05/2015

15/05/2015

2014

Resumo

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Inorganic pyrophosphatase (PPase) is widely studied, to be extremely important for survival of plants and microorganisms. PPases catalyze an essential reaction the hydrolysis of inorganic pyrophosphate (PPi) to inorganic phosphate (Pi). Studies involving the mechanism of PPase were performed in microorganisms culture. We didn’t found reports of PPase derived from soil metagenomic libraries. Soil environment has immense diversity of microorganisms, yet most remains unexplored and the metagenome are the technologies used and investigate uncultured microorganisms potential. The aim is to identify novel genes using the metagenomic approaches from a bioinformatics perspective and hopefully will serve as a useful resource. With this purpose, we used the metagenomic library of Eucalyptus spp. arboretum (EAA). We did a screening to select a positive clone and submitted them to the process of shotgun. The data obtained was submitted to bioinformatics analyses. These analyses identified were the novel MetaPPase gene and were classified according to the predict family and subfamily.

Formato

68-75

Identificador

http://www.scirp.org/Journal/PaperInformation.aspx?PaperID=43240#.VUvMdY7BwXA

Open Journal of Applied Sciences, v. 4, n. 2, p. 68-75, 2014.

2165-3917

http://hdl.handle.net/11449/123619

http://dx.doi.org/10.4236/ojapps.2014.42008

ISSN2165-3917-2014-04-02-68-75.pdf

3958124498479090

4462378046178590

3902020936480943

Idioma(s)

eng

Relação

Open Journal of Applied Sciences

Direitos

openAccess

Palavras-Chave #Soil Diversity #Bioinformatic #Structure #Membrane Protein #Ion Transport #metagenômica #pirofosfatase #translocador de H+
Tipo

info:eu-repo/semantics/article