Dynamics of glyphosate-induced conformational changes of Mycobacterium tuberculosis 5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) determined by hydrogen-deuterium exchange and electrospray mass spectrometry

The enzyme 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) catalyzes the reaction between shikimate 3-phosphate and phosphoenolpyruvate to form 5-enolpyruvylshikimate 3-phosphate, an intermediate in the shikimate pathway, which leads to the biosynthesis of aromatic amino acids. EPSPS exists in an open conformation in the absence of substrates and/or inhibitors and in a closed conformation when bound to the substrate and/or inhibitor. In the present report, the H/D exchange properties of EPSPS from Mycobacterium tuberculosis (Mt) were investigated for both enzyme conformations using ESI mass spectrometry and circular dichroism (CD). When the conformational changes identified by H/D exchanges were mapped on the 3-D structure, it was observed that the apoenzyme underwent extensive conformational changes due to glyphosate complexation, characterized by an increase in the content of alpha-helices from 40% to 57%, while the beta-sheet content decreased from 30% to 23%. These results indicate that the enzyme underwent a series of rearrangements of its secondary structure that were accompanied by a large decrease in solvent access to many different regions of the protein. This was attributed to the compaction of 71% of alpha-helices and 57% of beta-sheets as a consequence of glyphosate binding to the enzyme. Apparently, MtEPSPS undergoes a series of inhibitor-induced conformational changes, which seem to have caused synergistic effects in preventing solvent access to the core of molecule, especially in the cleft region. This may be part of the mechanism of inhibition of the enzyme, which is required to prevent the hydration of the substrate binding site and also to induce the cleft closure to avoid entrance of the substrates.

The dynamics of RNA participation in the vitellogenesis of Rhipicephalus sanguineus ticks Latreille 1806 (Acari:Ixodidae). I. Nucleoli or Cajal bodies?

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

The dynamics of RNA participation in the vitellogenesis of Rhipicephalus sanguineus ticks Latreille 1806 (Acari: Ixodidae). I. Nucleoli or Cajal bodies?

To understand the morphological and histological aspects of internal systems of ticks has become important matter since these arthropods have an impact in the areas of the economy and public health. In this context, this study has provided morphological data on female germinative cells of Rhipicephalus sanguineus ticks, ectoparasites of dogs that maintain a close relationship with human on a daily basis. Oocytes of engorged females were analyzed, through the PAS reaction (detection of polysaccharides) counterstained by methyl green (detection of RNA) revealing information that allowed to infer for the first time the presence of Cajal bodies, in the germinal vesicles (nuclei) of developing oocytes, as well as showing how the RNA and the polysaccharides are involved in the dynamics of the vitellogenesis in this species. [copyright] 2010 Elsevier Ltd. All rights reserved.

Shikimate Kinase (EC 2.7.1.71) from Mycobacterium tuberculosis: Kinetics and Structural Dynamics of a Potential Molecular Target for Drug Development

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Chromosomal organization of the 18S and 5S rRNAs and histone H3 genes in Scarabaeinae coleopterans: insights into the evolutionary dynamics of multigene families and heterochromatin

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Culture-dependent and culture-independent characterization of microorganisms associated with Aedes aegypti (Diptera: Culicidae) (L.) and dynamics of bacterial colonization in the midgut

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Structure and dynamics of a Cariniana estrellensis (Lecythidaceae) population in a fragment of Atlantic Forest in Minas Gerais, Brazil

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Population dynamics of Chrysomya megacephala (Diptera : Calliphoridae) at different temperatures

In this study we analysed the theoretical population dynamics of C. megacephala, an exotic blowfly, kept at 25 and 30degreesC, using a density-dependent mathematical model, with parametric estimates of survival and fecundity in the laboratory. No change in terms of oscillation patterns was found for the two temperatures. The populations exhibited a two-point limit cycle, i.e. oscillations between two fixed points, at 25 and 30degreesC. However a quantitative change was observed, indicating that at 25degreesC the number of immatures in equilibrium is 1176 and at 30degreesC, 1944. The implications of this difference in terms of equilibrium for population dynamics of C. megacephala are discussed.

Nest architecture and population dynamics of the Ponerinae ant, Ectatomma opaciventre Roger (Hymenoptera : Formicidae)

Eleven nests of Ectatomma opaciventre were collected from January to December, 1994, in Rio Claro, SP, southeastern Brazil. This species excavates their nests up to 68 cm deep, containing 3, 4 or 5 chambers. The hole of entrance has a chimney-like rigid structure, with up to 2/5 cm high. The most numerous colonies were found in January and February, with 47 and 62 adult ants, respectively. The quantity of individuals decreased from March, being observed colonies with only 9 adult ants in June and July. The colony population increased again since September. Reproductive forms (winged ants) were observed between October and February. We did not observed immature stages in July, but they were numerous between September and March. There was a significant correlation between the number of colony individuals and temperature, but not between the number of colony individuals and relative humidity and rainfall. E. opaciventre is a species of hunter ants which have not an efficient recruitment system for food collecting, consequently their colonies are small due to the scarcity of food resources during the colder and dry months.

Feeding dynamics of Cichla kelberi Kullander & Ferreira, 2006 introduced into an artificial lake in southeastern Brazil

O objetivo desse estudo foi caracterizar sazonalmente a dieta de Cichla kelberi em um lago artificial em Leme-SP, determinando os itens alimentares e as relações com os sexos e com a maturação gonadal dos exemplares amostrados. A dieta de C. kelberi apresenta uma dinâmica em três diferentes períodos: os meses de inverno foram caracterizados por baixa atividade alimentar e alta concentração de peixes indeterminados, durante a primavera ocorreu um aumento na atividade alimentar, sendo Tilapia sp. o item alimentar dominante e durante o verão e início do outono foi evidenciada alta taxa de canibalismo. A plasticidade na composição da dieta foi marcada pela quantidade de presas disponíveis durante os períodos do ano e pelo período reprodutivo.

The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Dynamics of the deconfinement transition of quarks and gluons in a finite volume

We employ finite elements methods for the approximation of solutions of the Ginzburg-Landau equations describing the deconfinement transition in quantum chromodynamics. These methods seem appropriate for situations where the deconfining transition occurs over a finite volume as in relativistic heavy ion collisions. where in addition expansion of the system and flow of matter are important. Simulation results employing finite elements are presented for a Ginzburg-Landau equation based on a model free energy describing the deconfining transition in pure gauge SU(2) theory. Results for finite and infinite system are compared. (C) 2009 Elsevier B.V. All rights reserved.

Configuration-Dependent Diffusion Dynamics of Downhill and Two-State Protein Folding

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Global dynamics of stationary solutions of the extended Fisher-Kolmogorov equation

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)