Estimating post-release survival and the influential factors for recreationally caught Black Bream (Acanthopagrus butcheri) in the Glenelg River, south eastern Australia

Black bream (Acanthopagrus butcheri) is the main target species amongst the estuarine recreational fisheries of Victoria, Australia. The A. butcheri fishery is managed through legal-minimum length and daily bag limits. The success of this management strategy requires that the survival rate for released fish is high. This study used the most common angling practices to estimate post-release survival and identify influential factors for undersized A. butcheri in Victoria. In total 1557 and 923 A. butcheri were caught and monitored for initial (≤1 h) and delayed (72 h) survival, respectively. Fish were caught across 3 years, with each year separated into cold and warm water periods with 8 fishing trial days in total. Only 1 of the 266 controls used to assess confinement effects died. Total survival was 95% (S.E. ± 0.8%) for shallow- and 74% (S.E. ± 3%) for deep-hooked fish and decreased as fish length increased. A post-mortem (PM) procedure was developed and showed that throat and gill injuries were the most frequent cause of deep-hooking death. It revealed that 97% of hooks left in fish remained there after 72 h and identified hooking location inaccuracies recorded at the time of capture. Total survival for deep-hooked fish was 20% higher when hooks were left in the fish. Deep-hooked fish were more likely to bleed when hooks were removed and total survival was lower for fish that bleed (58%) than fish that did not bleed (80%). Shallow-hooking rates decreased as fish length increased and were higher during warm water compared to cold water trials. The high shallow-hooking and survival rates observed suggest that A. butcheri survival in the fishery would be high, but deep-hooking has the potential to undermine the management strategy. Determining the shallow-hooking rate in the fishery would help clarify the impact of these findings at the fishery level.

Can sand slugs in rivers deliver conservation benefits? The biodiversity value of tributary junction plug wetlands in the Glenelg River, Australia

Restoration works are carried out to alleviate human impacts and improve habitats within ecosystems. However, human impacts may also create new (anthropogenic) habitat for species to exploit.A dilemma arises when proposed restoration works would remove anthropogenic habitat and the assemblages it supports. Sediment input into the Glenelg River has formed tributary junction plug wetlands at confluences. Sand slug removal is proposed as part of river rehabilitation, but would also drain plug wetlands. We sampled four plug wetland, four river run and three river pool sites to determine whether plug wetlands influence water quality and add to the biodiversity of macroinvertebrates in the Glenelg River.Water quality and macroinvertebrate diversity were similar in plug wetlands, river runs and river pools.Assemblages were distinct among all sites, regardless of type, so there was no characteristic ‘plug-wetland fauna’. Therefore, although removal of plug wetlands would not cause a dramatic loss of invertebrate biodiversity, it would destroy anthropogenic habitat that supports a similar range of species to natural habitats in a river subject to multiple degrading processes. Gains from rehabilitation should be weighed against the value of anthropogenic habitat and the extent of similar habitat lost elsewhere in the ecosystem.

Ecological response to environmental flows in two lowland rivers

Environmental disturbances in the Glenelg and Wimmera Rivers have been exacerbated by low flows. Consequently, environmental flows have been recommended although there is little empirical evidence of their effects. This thesis has shown that environmental flows are potentially beneficial in rivers subject to disturbances such as salinisation and sedimentation.

Land use change and impacts on nutrient loads using GIS

Land use change and its impacts on nutrient loads were investigated for the Glenelg-Hopkins Catchment in south-west Victoria, Australia. The study involved a cross-disciplinary approach comprising of remote sensing, Geographical Information Systems, spatial and statistical modelling to identify relationships between land use and stream water quality over a large regional catchment of 27,000 square kilometers.

Fish assemblage response to rehabilitation of a sand-slugged lowland river

The impact of excessive sediment supply on river channels has been  described in many areas of the world. Sediment deposition disturbance alters habitat  structure by decreasing channel depth, changing substrate composition and burying woody debris. River rehabilitation is occurring worldwide, but information is scant on fish assemblage responses to rehabilitation in sedimentdisturbed lowland rivers. Sediment removal and large woody debris (LWD) replacement  were used to experimentally rehabilitate habitat along a 1500m stretch of the Glenelg River in western Victoria, Australia. Using an asymmetrical before-after control-impact (BACI) design, fish were captured before and after the reach was rehabilitated, from two control reaches and from a ‘higher quality’ reference reach. After two years post-rehabilitation monitoring, the fish assemblage at the rehabilitated reach did not differ from control reaches. Temporal changes in taxa richness and the abundance of Philypnodon grandiceps, Nannoperca spp. and three angling taxa occurred after rehabilitation (winter 2003) compared with the before period (winter 2002), but these effects did not differ between rehabilitated and control locations. Highest taxa richness and abundances occurred at the reference location. High salinity coincided with the timing of rehabilitation works, associated with low river discharges due to drought. The negative effects of other large-scale disturbances may have impaired the effectiveness of reachscale rehabilitation or the effects of rehabilitation may take longer than two years to develop in a lowland river subjected to multiple environmental disturbances.

Hydrologic model for the Woady Yaloak River catchment

A hydrologic model was developed to predict the long-term impacts of land use change on the hydrology of the Woady Yaloak River catchment. The model can be used by catchment managers to formulate management decisions about land use changes expected to occur across the catchment in the future.

The development of 10 novel polymorphic microsatellite markers through next generation sequencing and a preliminary population genetic analysis for the endangered Glenelg spiny crayfish, Euastacus bispinosus

The Glenelg spiny crayfish, Euastacus bispinosus, is an iconic freshwater invertebrate of south eastern Australia and listed as 'endangered' under the Environment Protection and Biodiversity Conservation Act 1999, and 'vulnerable' under the International Union for Conservation of Nature's Red List. The species has suffered major population declines as a result of over-fishing, low environmental flows, the introduction of invasive fish species and habitat degradation. In order to develop an effective conservation strategy, patterns of gene flow, genetic structure and genetic diversity across the species distribution need to be clearly understood. In this study we develop a suite of polymorphic microsatellite markers by next generation sequencing. A total of 15 polymorphic loci were identified and 10 characterized using 22 individuals from the lower Glenelg River. We observed low to moderate genetic variation across most loci (mean number of alleles per locus = 2.80; mean expected heterozygosity = 0.36) with no evidence of individual loci deviating significantly from Hardy-Weinberg equilibrium. Marker independence was confirmed with tests for linkage disequilibrium, and analyses indicated no evidence of null alleles across loci. Individuals from two additional sites (Crawford River, Victoria; Ewens Ponds Conservation Park, South Australia) were genotyped at all 10 loci and a preliminary investigation of genetic diversity and population structure was undertaken. Analyses indicate high levels of genetic differentiation among sample locations (F ST = 0.49), while the Ewens Ponds population is genetically homogeneous, indicating a likely small founder group and ongoing inbreeding. Management actions will be needed to restore genetic diversity in this and possibly other at risk populations. These markers will provide a valuable resource for future population genetic assessments so that an effective framework can be developed for implementing conservation strategies for E. bispinosus.

The influence of reduced flow during a drought on patterns of variation in macroinvertebrate assemblages across a spatial hierarchy in two lowland rivers

1. With the aim of determining whether patterns of variation in macroinvertebrate assemblage composition across the hierarchy of spatial units in two lowland rivers changed during a supra-seasonal drought (1997–2000), patterns during a reduced flow season (1999–2000) were compared with those during two preceding higher flow seasons (1997–98 and 1998–99) using samples from the Glenelg and Wimmera Rivers, two lowland regulated rivers in western Victoria, Australia.

2. We hypothesised that (i) differences between reaches would increase during the reduced flow season owing to decreased hydrological connectivity, (ii) differences between the habitats would decrease because the cessation of flow in run habitats should cause them to become more similar to pool habitats and (iii) differences between microhabitats would also decrease because of reduced scour of inorganic substrata and large woody debris.

3. During each season, macroinvertebrates were sampled from three microhabitats (sand/silt substratum, large woody debris and macrophytes) that were hierarchically nested within a run or pool habitat and within one of three reaches within each river. A range of physico-chemical variables was also sampled.

4. Analysis of similarity showed that assemblage composition in both rivers during the higher flow seasons differed more among microhabitats than other spatial units. However, during the reduced flow season, assemblage composition in the Wimmera River differed most among reaches. This change in pattern was associated with the combined effects of decreased flow and longitudinal increases in salinity. In contrast, the fauna of the Glenelg River appeared to be resistant to the effects of the reduced flow season, owing to limited decline in water quality despite lower river discharge.

5. As salinisation and poor water quality in the Wimmera River result from human activities in the catchment, these results support the idea that human impacts on rivers can change macroinvertebrate scaling patterns and exacerbate the effects of drought beyond the tolerance of many riverine macroinvertebrates.

Multiple lines of evidence for the beneficial effects of environmental flows in two lowland rivers in Victoria, Australia

The aim of this study was to identify whether environmental flows released into two lowland rivers (the Glenelg and Wimmera Rivers, western Victoria, Australia) during the spring to autumn period had successfully ameliorated the negative effects of multiple human impacts. Macroinvertebrates and a range of physico-chemical variables were sampled from three reaches in each river. Both rivers were sampled during three environmental release seasons with average-sized releases (1997-1998, 1998-1999 and 2001-2002) and two drought seasons with limited releases (1999-2000 and 2000-2001). The effects of releasing average-sized environmental flows on macroinvertebrates and physico-chemical variables were assessed by comparison with data from the two drought seasons. For the Glenelg River, data from a reference season prior to the release of environmental flows (1995-1996) was also compared to data from the five environmental flow seasons. Multivariate analyses revealed four pieces of evidence indicating that the release of environmental flows effectively slowed the process of environmental degradation in the Glenelg River but not in the Wimmera River: (1) the magnitude of the river discharge was dependent on the size of environmental flow releases; (2) in the Wimmera River, water quality deteriorated markedly during the two drought seasons and correlated strongly with macroinvertebrate assemblage structure, but this was not observed in the Glenelg River; (3) the taxonomic composition of the macroinvertebrate assemblages among contrasting flow release seasons reflected the severe deterioration in water quality of the Wimmera River; (4) despite two drought seasons with minimal environmental flow releases, the macroinvertebrate assemblage in the Glenelg River did not differ from the average-release seasons, nor did it return to a pre-environmental flows condition. Therefore, it appears that environmental flow releases did sustain the macroinvertebrate assemblage and maintain reasonable water quality in the Glenelg River. However, in the Wimmera River, release volumes were too small to maintain low salinities and were associated with marked changes in the macroinvertebrate assemblage. Therefore, there are multiple lines of evidence that environmental flow releases of sufficient magnitude may slow the process of degradation in a regulated lowland river.

The relationship between native vegetation and in-stream salinity: An Australian case study

The Glenelg-Hopkins area is a large regional watershed (2.6 million ha) in southwest Victoria that has been extensively cleared for agriculture. In-stream electrical conductivity (EC) in relation to remnant native vegetation is examined from the headwaters to the upper extent of the estuary of the Glenelg River. Five water quality gauging stations were selected. Their contributing subcatchments represent a continuum of disturbance. Proportions of native vegetation ranged from ∼100% at the headwaters of the river to ∼30% at the furthest downstream gauge station. The relationship between remnant vegetation and in-stream EC was examined using aggregated and non-aggregated land use statistics over a period of 22 years from three land use maps. Increased proportions of native vegetation were significantly negatively correlated with in-stream EC and were consistent across all scenarios investigated.