Large-scale biological sequence assembly and alignment by using computing grid

Large-scale sequence assembly and alignment are fundamental parts of biological computing. However, most of the large-scale sequence assembly and alignment require intensive computing power and normally take very long time to complete. To speedup the assembly and alignment process, this paper parallelizes the Euler sequence assembly and pair-wise/multiple sequence assembly, two important sequence assembly methods, and takes advantage of Computing Grid which has a colossal computing capacity to meet the large-scale biological computing demand.

Autonomic job scheduling policy for grid computing

Autonomic middleware services will play an important role in the management of resources and distributed workloads in emerging distributed computing environments. In this paper, we address the problem of autonomic grid resource scheduling and propose a scheduling infrastructure that is capable of self-management in the face of dynamic behavior inherent to this kind of systems.

Job scheduling policy for high throughput grid computing

The growing computational power requirements of grand challenge applications has promoted the need for merging high throughput computing and grid computing principles to harness computational resources distributed across multiple organisations. This paper identifies the issues in resource management and scheduling in the emerging high throughput grid computing context. We also survey and study the performance of several space-sharing and time-sharing opportunistic scheduling policies that have been developed for high throughput computing.

Robust parallel job scheduling infrastructure for service-oriented grid computing systems

Recent trends in grid computing development is moving towards a service-oriented architecture. With the momentum gaining for the service-oriented grid computing systems, the issue of deploying support for integrated scheduling and fault-tolerant approaches becomes paramount importance. To this end, we propose a scalable framework that loosely couples the dynamic job scheduling approach with the hybrid replications approach to schedule jobs efficiently while at the same time providing fault-tolerance. The novelty of the proposed framework is that it uses passive replication approach under high system load and active replication approach under low system loads. The switch between these two replication methods is also done dynamically and transparently.

Grid accounting service infrastructure for service-oriented grid computing systems

In this paper, we propose an architecture of accounting and payment services for service-oriented grid computing systems. The proposed accounting and payment services provide the mechanisms for service providers to be paid for authorized use of their resources. It supports the recording of usage data, secure storage of that data, analysis of that data for purposes of billing and so forth. It allows a variety of payment methods, it is scalable, secure, convenient, and reduce the overall cost of payment processing while taking into account requirements of Grid computing systems.

A novel data replication and management protocol for mobile computing systems

Mobile computing has enabled users to seamlessly access databases even when they are on the move. Mobile computing environments require data management approaches that are able to provide complete and highly available access to shared data at any time from any where. In this paper, we propose a novel replicated data protocol for achieving such goal. The proposed scheme replicates data synchronously over stationary sites based on three dimensional grid structure while objects in mobile sites are asynchronously replicated based on commonly visited sites for each user. This combination allows the proposed protocol to operate with less than full connectivity, to easily adapt to changes in group membership and not require all sites to agree to update data objects at any given time, thus giving the technique flexibility in mobile environments. The proposed replication technique is compared with a baseline replication technique and shown to exhibit high availability, fault tolerance and minimal access times of the data and services, which are very important in an environment with low-quality communication links.

Building autonomic clusters : a response to IBM’s autonomic computing challenge

IBM has announced Autonomic Computing as one of its Grand Challenges. A list of characteristics was generated to describe an autonomic computing system. Many researchers and research group have responded positively to the challenge by initiating research around one or two of the characteristics identified by IBM as the requirements for Autonomic Computing. We have addressed the IBMrsquos request to contribute to the challenge by building an autonomic operating system that possesses nearly all IBM characteristics. This paper contains our response to the IBMrsquos Autonomic Computing Challenge.

The design and development of an integrated system for object-oriented finite element computing

Finite Element Method (FEM) is widely used in Science and Engineering since 1960’s. The vast majority of FEM software is procedure-oriented. However, this conventional style of designing FEM software encounters problems in maintenance, reuse, and expansion of the software. Recently the object-oriented finite element method attracts the attention of lots of researchers, and now there is a growing interest in this method. In this paper, the object-oriented finite element (OOFE) is briefly introduced. Then the design and development of an integrated OOFE system is described. A comparison of the integrated OOFE system and a procedure-oriented system shows that our OOFE system has many advantages.

Building autonomic clusters: a response to IBM's autonomic computing challenge

IBM has announced Autonomic Computing as one of its Grand Challenges. A list of characteristics was generated to describe an autonomic computing system. Many researchers and research group have responded positively to the challenge by initiating research around one or two of the characteristics identified by IBM as the requirements for Autonomic Computing. We have addressed the IBMs request to contribute to the challenge by building an autonomic operating system that possesses nearly all IBM characteristics. This paper contains our response to the IBMs Autonomic Computing Challenge.

Secure accounting and payment infrastructure for grid computing

In this paper, we propose an architecture of accounting and payment services for service oriented grid computing systems. The proposed accounting and payment services provide the mechanisms for service providers to be paid for authorized use of their resources. It supports the recording of usage data, secure storage of that data, analysis of that data for purposes of billing and so forth. It allows a variety of payment methods, it is scalable, secure, convenient, and reduce the overall cost of payment processing while taking into account, requirements of Grid computing systems.

Cluster operating system support for parallel autonomic computing

The aim of this paper is to show a general design of autonomic elements and initial implementation of a cluster operating system that moves parallel processing on clusters to the computing mainstream using the autonomic computing vision. The significance of this solution is as follows. Autonomic Computing was identified by IBM as one of computing's Grand Challenges. The human body was used to illustrate an Autonomic Computing system that possesses self-knowledge, self-configuration, self optimization, self-healing, and self-protection, knowledge of its environment and user friendliness properties. One of the areas that could benefit from the comprehensive approach created by the autonomic computing vision is parallel processing on non-dedicated clusters. Many researchers and research groups have responded positively to the challenge by initiating research around one or two of the characteristics identified by IBM as the requirements for autonomic computing. We demonstrate here that it is possible to satisfy all Autonomic Computing characteristics.

Beyond pretence: new sensibilities for computing and communication technologies in teacher education

Making particular reference to schools’ traditional relationships with CCTS (and the kinds of ‘pretend’ and ‘artificial’ learning/assessment tasks that this relationship has historically produced), this paper details a research and teaching agenda focused on exploring the potential of having students work on tasks with value to local and/or school communities. The paper maps the informing theories and current practices of schools
participating in the ‘knowledge producing schools’ (KPS) agenda. Particular attention is given to the ways in which KPS schools are better positioned to respond to the needs of diverse student/community populations, particularly those students traditionally perceived as ‘at risk’.

Supporting disconnected operations in mobile computing

Mobile computing has enabled users to seamlessly access databases even when they are on the move. However, in the absence of readily available high-quality communication, users are often forced to operate disconnected from the network. As a result, software applications have to be redesigned to take advantage of this environment while accommodating the new challenges posed by mobility. In particular, there is a need for replication and synchronization services in order to guarantee availability of data and functionality, (including updates) in disconnected mode. To this end we propose a scalable and highly available data replication and management service. The proposed replication technique is compared with a baseline replication technique and shown to exhibit high availability, fault tolerance and minimal access times of the data and services, which are very important in an environment with low-quality communication links.