Permian of West Yunnan, Southwest China: a biostratigraphic synthesis

Recent progress in the study of Permian stratigraphy of western Yunnan, southwest China, is reviewed with particular references to the Tengchong and Baoshan blocks and the Changning–Menglian Belt. Where confusion or controversy exists in stratigraphical nomenclature and/or dating, we attempt to clarify the situation based on our recent field observations and newly obtained research results. The Permian within the Changning–Menglian Belt embraces different stratigraphic successions, suggesting different tectonic settings, ranging from passive margin and active margin, to oceanic basin and seamounts. Permo-Carboniferous faunas in the carbonate sequences of the Changning–Menglian Belt are of typical Cathaysian affinity, as demonstrated by abundant fusulinaceans and compound rugose corals. The Permian stratigraphy and faunas of the Tenchong and Baoshan blocks are markedly different from those of the Changning–Menglian Belt. The Baoshan Block lacks Upper Carboniferous deposits, and its subsequent Lower Permian sequence consists predominantly of siliciclastic strata yielding cool-water faunas and possibly glaciogene diamictites, overlain by thick basaltic lava and volcaniclastics of probably rift origin. The upper part of the Permian in the Baoshan Block is characterized by carbonates containing mixed Cathaysian and Gondwanan faunas. The Tengchong Block has a similar evolutionary history to the Baoshan Block, but completely lacks volcanic rocks.

Lopingian (Late Permian) stratigraphy, sedimentation and palaeobiogeography in southern Tibet

Investigations of the Permian-Triassic sections and limestone blocks scattered in the Indus-Tsangbo Suture Zone in southern Tibet show widespread distribution of the Lopingian strata. The Lopingian deposits mostly contain rich brachiopod fossils and characteristic conodonts of the Mesogondolella shenz Zone of latest Changhsingian age in the topmost part. Brachiopod assemblages are largely comparable with those known from the upper Wargal and Chhidru Formations of the Salt Range, Pakistan, the Zewan Formation of Kashmir, the upper part of the Kuling Group in Spiti of India and the Hardman Formation of Western Australia. A revised Lopingian (Late Permian) age is proposed for the Selong Group and its equivalents in southern Tibet. The Lopingian deposits in southern Tibet can be grouped into three different sedimentary types, each of which reflects different sedimentary environments from coastal to continental shelfal settings on the northern peri-Gondwanan margin. The Qubu-type sequence represents marine coastal and proximal barrier-lagoon sediments during a gradual sea-level rise. Micaceous sandstone and shale of regressive origin, with abundant palynomorphs and acritarches, developed during the Late Lopingian sea-level lowstand, which is followed by a major rapid transgression at the very end of Permian. The Selong-type sequence in the Selong area consists of bioclastic limestone and calcareous shale in the lower part, and crinoid grainstone in the upper part. The latter part is believed to have been formed in a high-energy inner shelf shoal setting. The Chitichun-type sequence, sporadically distributed along the Indus-Tsangbo suture zone as small limestone blocks, consists of pure bioclastic sparite with the ammonoid Cyclolobus fauna. It is interpreted as the break-up products of sea-mounts and/or small isolated carbonate build-ups developed on the outer shelfal settings.

東澳大利亞悉尼盆地南部二疊紀的地層、沈積環境與盆地演化

The latest Carboniferous to Triassic Sydney-Gunnedah-Bowen Basin System in the eastern Australia is an elongate structural basin that locates between the Lachlan Caledonian Fold Belt in the west and the New England Fold Belt in the east. Extending from the Gunnedah district in the north to the Batemans Bay in the south, the Sydney Basin is a subbasin located in the southern part of the Sydney-Gunnedah-Bowen Basin System. The Permian in Sydney Basin consists of sedimentary sequences of fluvial, delta, littoral and shallow marine environments, as well as volcanic rocks. In the southwest of southern Sydney Basin, the Permian unconformably onlaps the highly deformed and metamorphosed Lachlan Fold Belts. The Permian System from the southern Sydney Basin comprises the Lower Permian Tallaterang Group (consisting of Clyde Coal Measures and Wasp Head Formation), Shoalhaven Group ( consisting of the Lower Permian Yadboro & Tallong Conglomerate, Yarrunga Coal Measures, Pebbly Beach Formation, Snapper Point Formation and the Middle Permian Wandrawandian Siltstone, Nowra Sandstone, Berry Siltstone and Broughton Formation) and the Upper Permian Illwarra Coal Measures. From the latest Carboniferous to the Middle Triassic, the SydneyBowen Basin had experienced different tectonic phases from a back-arc extensional regime to a typical foreland basin: a back-arc extensional phase, a passive thermal sag phase and a flexural loading and increased compressional phase.

Phylogenetic relationships among nine scallop species (Bivalvia : Pectinidae) inferred from nucleotide sequences of one mitochondrial and three nuclear gene regions

Current knowledge of the evolutionary relationships among scallop species (Mollusca: Bivalvia: Pectinidae) in the Indo-Pacific region is rather scanty. To enhance the understanding of the relationships within this group, phylogenies of nine species of scallops with the majority from coastal regions of Thailand, were reconstructed by maximum parsimony, maximum likelihood, and Bayesian methods using sequences of the 16S rRNA of the mitochondrial genome, and a fragment containing the ITS1, 5.8S and ITS2 genes of the nuclear DNA. The trees that resulted from the three methods of analysis were topologically identical, however, gained different levels of support at some nodes. Nine species were clustered into two major clades, corresponding to two subfamilies (Pectininae and Chlamydinae) of the three currently recognized subfamilies within Pectinidae. Overall, the relationships reported herein are mostly in accordance with the previous molecular studies that used sequences of the mtDNA cytochrome oxidase subunit I, and the classification system based on microsculpture of shell features and morphological characteristics of juveniles. Levels of divergences were different among genes (i.e., the 5.8S gene showed the lowest levels of nucleotide divergence at all levels, whereas the 16S rRNA showed the highest level of variation within species, and ITS2 gene revealed the highest level of divergence at higher levels).

Revised stratigraphy of the Blanchetown Clay, Murray Basin: age constraints on the evolution of paleo Lake Bungunnia

Paleo Lake Bungunnia covered more than 40 000 km2 of southern Australia during the Plio-Pleistocene, although the age and origin of the lake remain controversial. The Blanchetown Clay is the main depositional unit and outcrop at Nampoo Station in far-western New South Wales provides the most continuous lacustrine section preserved in the basin. Here the Blanchetown Clay represents the maximum lake fill and comprises: (i) a basal well-sorted sand with interbedded clay (Chowilla Sand), representing initial flooding at the time of lake formation; (ii) a thick sequence of green-grey clay comprised dominantly of kaolinite and illite, with the apparently cyclic occurrence of illite interpreted to represent cool and dry glacial climatic intervals; and (iii) a 2.6 m-thick sequence of finely laminated silt and silty clay, here defined as the Nampoo Member of the Blanchetown Clay. New magnetostratigraphic data constrain the age of the oldest lake sediments to be younger than 2.581 Ma (Matuyama-Gauss boundary) and probably as young as 2.4 Ma. This age is significantly younger than the age of 3.2 Ma previously suggested for lake formation. The youngest Blanchetown Clay is older than 0.781 Ma (Brunhes-Matuyama boundary) and probably as old as 1.2 Ma. The Nampoo Station section provides a framework for the construction of a regional Plio-Pleistocene stratigraphy in the Murray Basin.

Extensible motif and aberrant nucleotide extraction in genomic sequences

The project focusses on the discovery of conserved DNA sequences in bacterial genomes and comparative analysis of bacterial genomes to elicit evolutionary trends. The outcomes have produced novel techniques for modelling motifs in DNA and the characterisation of evolutionary processes in medically significant bacterial pathogens.