Mykobakteerien lajinmääritykseen käytettävän kitin validointi

Tämä opinnäytetyö tehtiin Elintarviketurvallisuusvirasto Eviran Helsingin yksikön eläintautibakteriologian ryhmälle. Työn tarkoituksena oli löytää ja ottaa käyttöön tämänhetkisen AccuProbe-menetelmän lisäksi monipuolisempi menetelmä mykobakteerien lajinmääritykseen. AccuProbe-testillä pystytään tunnistamaan suurin osa Eviraan tulleista näytteistä eristetyistä mykobakteereista, mutta muun muassa kalanäytteistä eristettyjen mykobakteerien tunnistamiseen ei ole ollut menetelmää. Työhön valittiin GenoType® Mycobacterium CM -kitti. Mykobakteerien lajinmääritykseen kehitetyn GenoType® Mycobacterium CM -kitin käyttöä opeteltiin aluksi Mycobacterium avium ATCC 25291 -kannalla. Tämän jälkeen kittiä kokeiltiin eläimistä eristetyillä sekä M. intracellulare ATCC 13950- ja M. tuberculosis ATCC 25177 -kannoilla. Kyseessä on hybridisaatioon perustuva DNA-liuska-menetelmä, joka sisältää kolme päävaihetta: DNA:n eristäminen, monistaminen PCR:llä ja hybridisaatio. Työn aikana optimoitiin substraatin vaikutusaikoja, seurattiin hybrisaatiovaiheen lämpötiloja ja kehitettiin kitin valmistajan suosittelemaa ravistelevaa lämpöhaudetta / inkubaattoria vastaavia laitteita. Työn tuloksena kitti on käyttövalmis, mutta menetelmän soveltuvuutta eläinkannoille täytyy testata lisää. Osassa tulosliuskoissa oli vääriä vaaleita viivoja ja osa oikeista vaaleista viivoista puuttui. Saadut tulokset antavat kuitenkin hyvän pohjan jatkaa kitin validointia.

Infant Colic Crying and Gastrointestinal Tract – Causes, Consequences and Cure

Despite over 50 years of investigation, the precise cause of infant colic crying remains unresolved and the long-term consequences unrevealed, and an effective treatment is lacking. Indeed, a more profound understanding of the complex nature of infants’ excessive crying is needed. The purpose of this series of studies was to investigate the association between gut microbiota composition and infant crying, to evaluate the impact of colic crying on children’s later health and to study the possibilities of treating and preventing excessive crying with pro- and prebiotics. The material comprised three on-going, prospective randomized controlled trials of the probiotic Lactobacillus rhamnosus GG (ATCC 53103, LGG) or a mixture of prebiotics administered in early infancy. The study populations consisted of term infants (n=89), preterm infants (n=94) and term colic infants (n=30). Early crying was found to be inversely associated with the number of Bifidobacterium and Lactobacillus. Furthermore, at the age of 13 years functional gastrointestinal disorders (FGID) were manifested more frequently among children with previous colic crying than in those without. In preterm infants pro- and prebiotic supplementation during the first months of life reduced the frequency of excessive crying when compared to placebo. In parallel, probiotic LGG in tandem with a cow’s milk elimination diet and behavioral counseling reduced the daily crying amount among term colic infants when compared to placebo. In conclusion, the composition of the gut microbiota is associated with infant crying and colic, and probiotic LGG might provide a safe and effective treatment or preventive option to alleviate excessive crying in early infancy in term and preterm infants. Furthermore, early colic crying might be associated with the later development of FGID.

Ultrastructural changes of Fusobacterium nucleatum as a defense mechanism against human neutrophil peptide-1 - A Transmission Electron Microscopy (TEM) study

Aims: The aim of this work was to assess the ultrastructural changes, cellular proliferation, and the biofilm formation ability of F. nucleatum as defense mechanisms against the effect of HNP-1. Materials and methods: The type strain of F. nucleatum (ssp. nucleatum ATCC 25586) and two clinical strains (ssp. polymorphum AHN 9910 and ssp. nucleatum AHN 9508) were cultured and incubated with four different test concentrations of recombinant HNP-1 (1, 5, 10 and 20 µg/ml) and one control group (0 µg/ml). Bacterial pellets from each concentration were processed for TEM imaging. Planktonic growth was assessed and colony forming units (CFU) were measured to determine the cellular proliferation. Scrambled HNP-1 was used for confirmation. Results: TEM analyses revealed a decrease in the outer membrane surface corrugations and roughness of the strain AHN 9508 with increasing HNP-1 concentrations. In higher concentrations of HNP-1, the strain AHN 9910 showed thicker outer membranes with a number of associated rough vesicles attached to the outer surface. For ATCC 25586, the treated bacterial cells contained higher numbers of intracellular granules with increasing the peptide concentration. Planktonic growth of the two clinical strains were significantly enhanced (P<0.001) with gradually increased concentrations of HNP-1. None of the planktonic growth results of the 3 strains incubated with the scrambled HNP-1 was statistically significant. HNP-1 decreased the biofilm formation of the two clinical strains, AHN 9910 and 9508, significantly (P<0.01 and P<0.001; respectively). Conclusions: The present in vitro study demonstrates that F. nucleatum has the ability to withstand the lethal effects of HNP-1 even at concentrations simulating the diseased periodontium in vivo. The increase in planktonic growth could act as defense mechanisms of F. nucleatum against HNP-1.