Purification of Hydrocarbon Waste Streams

Purification of hydrocarbon waste streams is needed to recycle valuable hydrocarbon products, reduce hazardous impacts on environment, and save energy. To obtain these goals, research must be focused on the search of effective and feasible purification and re-refining technologies. Hydrocarbon waste streams can contain both deliberately added additives to original product and during operation cycle accumulated undesired contaminants. Compounds may have degenerated or cross-reacted. Thus, the presence of unknown species cause additional challenges for the purification process. Adsorption process is most suitable to reduce impurities to very low concentrations. Main advantages are availability of selective commercial adsorbents and the regeneration option to recycle used separation material. Used hydrocarbon fraction was purified with various separation materials in the experimental part. First screening of suitable materials was done. In the second stage, temperature dependence and adsorption kinetics were studied. Finally, one fixed bed experiment was done with the most suitable material. Additionally, FTIR-measurements of hydrocarbon samples were carried out to develop a model to monitor the concentrations of three target impurities based on spectral data. Adsorption capacities of the tested separation materials were observed to be low to achieve high enough removal efficiencies for target impurities. Based on the obtained data, batch process would be more suitable than a fixed bed process and operation at high temperatures is favorable. Additional pretreatment step is recommended to improve removal efficiency. The FTIR-measurement was proven to be a reliable and fast analysis method for challenging hydrocarbon samples.

Bacterial community structure and petroleum hydrocarbon degradation in the Baltic Sea

The Baltic Sea is unique by its biological, geochemical and physical features. The number of species of larger organisms is small and the species composition is distinctive. On the contrary microbial communities are diverse. Because of the low salinity levels, bacterial communities differ from the ones in the oceans. Knowing the structure of these communities better and how they response to different environmental conditions helps us to estimate how different factors affect the balance and function of the Baltic Sea ecosystem. Bacteria are the key players when it comes to natural biogeochemical processes and human-induced phenomena like eutrophication, oil spills or disposal of other harmful substances to the sea ecosystem. In this thesis, bacterial community structure in the sea surface microlayer and subsurface water of the Archipelago Sea were compared. In addition, the effect of diatom derived polyunsaturated aldehydes on bacterial community structure was studied by a mesocosm experiment. Diesel, crude oil and polycyclic aromatic hydrocarbon degradation capacity of the Baltic Sea bacteria was studied in smaller scale microcosm experiments. In diesel oil experiments bacteria from water phase of the Archipelago Sea was studied. Sediment and iron manganese concretions collected from the Gulf of Finland were used in the crude oil and polycyclic aromatic hydrocarbon experiments. The amount of polycyclic aromatic hydrocarbon degradation genes was measured in all of the oil degradation experiments. The results show how differences in bacterial community structure can be seen in the sea surface when compared to the subsurface waters. The mesocosm experiment demonstrated how diatom-bacteria interactions depend on other factors than diatom derived polyunsaturated aldehydes, which do not seem to have an effect on the bacterial community structure as has been suggested in earlier studies. The dominant bacterial groups in the diesel microcosms differed in samples taken from a pristine site when compared to a site with previous oil exposure in the Archipelago Sea area. Results of the study with sediment and iron-manganese concretions indicate that there are diverse bacterial communities, typical to each bottom type, inhabiting the bottoms of the Gulf of Finland capable to degrade oil and polycyclic aromatic hydrocarbon compounds.  

Type II aromatic polyketide biosynthetic tailoring enzymes: diversity and adaptation in Streptomyces secondary metabolism.

Members of the bacterial genus Streptomyces are well known for their ability to produce an exceptionally wide selection of diverse secondary metabolites. These include natural bioactive chemical compounds which have potential applications in medicine, agriculture and other fields of commerce. The outstanding biosynthetic capacity derives from the characteristic genetic flexibility of Streptomyces secondary metabolism pathways: i) Clustering of the biosynthetic genes in chromosome regions redundant for vital primary functions, and ii) the presence of numerous genetic elements within these regions which facilitate DNA rearrangement and transfer between non-progeny species. Decades of intensive genetic research on the organization and function of the biosynthetic routes has led to a variety of molecular biology applications, which can be used to expand the diversity of compounds synthesized. These include techniques which, for example, allow modification and artificial construction of novel pathways, and enable gene-level detection of silent secondary metabolite clusters. Over the years the research has expanded to cover molecular-level analysis of the enzymes responsible for the individual catalytic reactions. In vitro studies of the enzymes provide a detailed insight into their catalytic functions, mechanisms, substrate specificities, interactions and stereochemical determinants. These are factors that are essential for the thorough understanding and rational design of novel biosynthetic routes. The current study is a part of a more extensive research project (Antibiotic Biosynthetic Enzymes; www.sci.utu.fi/projects/biokemia/abe), which focuses on the post-PKS tailoring enzymes involved in various type II aromatic polyketide biosynthetic pathways in Streptomyces bacteria. The initiative here was to investigate specific catalytic steps in anthracycline and angucycline biosynthesis through in vitro biochemical enzyme characterization and structural enzymology. The objectives were to elucidate detailed mechanisms and enzyme-level interactions which cannot be resolved by in vivo genetic studies alone. The first part of the experimental work concerns the homologous polyketide cyclases SnoaL and AknH. These catalyze the closure of the last carbon ring of the tetracyclic carbon frame common to all anthracycline-type compounds. The second part of the study primarily deals with tailoring enzymes PgaE (and its homolog CabE) and PgaM, which are responsible for a cascade of sequential modification reactions in angucycline biosynthesis. The results complemented earlier in vivo findings and confirmed the enzyme functions in vitro. Importantly, we were able to identify the amino acid -level determinants that influence AknH and SnoaL stereoselectivity and to determine the complex biosynthetic steps of the angucycline oxygenation cascade of PgaE and PgaM. In addition, the findings revealed interesting cases of enzyme-level adaptation, as some of the catalytic mechanisms did not coincide with those described for characterised homologs or enzymes of known function. Specifically, SnoaL and AknH were shown to employ a novel acid-base mechanism for aldol condenzation, whereas the hydroxylation reaction catalysed by PgaM involved unexpected oxygen chemistry. Owing to a gene-level fusion of two ancestral reading frames, PgaM was also shown to adopt an unusual quaternary sturucture, a non-covalent fusion complex of two alternative forms of the protein. Furthermore, the work highlighted some common themes encountered in polyketide biosynthetic pathways such as enzyme substrate specificity and intermediate reactivity. These are discussed in the final chapters of the work.

Libyan breast cancer: Health services and biology. Diagnosis delay and prognostic value of DNA pploidy, S-phase fraction, and Ki-67 and Bcl-2 immunohistochemistry

The aim of this study was to investigate the diagnosis delay and its impact on the stage of disease. The study also evaluated a nuclear DNA content, immunohistochemical expression of Ki-67 and bcl-2, and the correlation of these biological features with the clinicopathological features and patient outcome. 200 Libyan women, diagnosed during 2008–2009 were interviewed about the period from the first symptoms to the final histological diagnosis of breast cancer. Also retrospective preclinical and clinical data were collected from medical records on a form (questionnaire) in association with the interview. Tumor material of the patients was collected and nuclear DNA content analysed using DNA image cytometry. The expression of Ki-67 and bcl-2 were assessed using immunohistochemistry (IHC). The studies described in this thesis show that the median of diagnosis time for women with breast cancer was 7.5 months and 56% of patients were diagnosed within a period longer than 6 months. Inappropriate reassurance that the lump was benign was an important reason for prolongation of the diagnosis time. Diagnosis delay was also associated with initial breast symptom(s) that did not include a lump, old age, illiteracy, and history of benign fibrocystic disease. The patients who showed diagnosis delay had bigger tumour size (p<0.0001), positive lymph nodes (p<0.0001), and high incidence of late clinical stages (p<0.0001). Biologically, 82.7% of tumors were aneuploid and 17.3% were diploid. The median SPF of tumors was 11% while the median positivity of Ki-67 was 27.5%. High Ki-67 expression was found in 76% of patients, and high SPF values in 56% of patients. Positive bcl-2 expression was found in 62.4% of tumors. 72.2% of the bcl-2 positive samples were ER-positive. Patients who had tumor with DNA aneuploidy, high proliferative activity and negative bcl-2 expression were associated with a high grade of malignancy and short survival. The SPF value is useful cell proliferation marker in assessing prognosis, and the decision cut point of 11% for SPF in the Libyan material was clearly significant (p<0.0001). Bcl-2 is a powerful prognosticator and an independent predictor of breast cancer outcome in the Libyan material (p<0.0001). Libyan breast cancer was investigated in these studies from two different aspects: health services and biology. The results show that diagnosis delay is a very serious problem in Libya and is associated with complex interactions between many factors leading to advanced stages, and potentially to high mortality. Cytometric DNA variables, proliferative markers (Ki-67 and SPF), and oncoprotein bcl-2 negativity reflect the aggressive behavior of Libyan breast cancer and could be used with traditional factors to predict the outcome of individual patients, and to select appropriate therapy.

Kuivajätehuollon hiilijalanjälki ja kustannukset sekä kuljetusten kilpailutus – Etelä-Karjalan aluekeräyspisteverkoston päivitys

Tutkimuksen tavoitteena oli yhtenäistää Etelä-Karjalan alueen erilaisia tapoja toimia alueke-räyksen suhteen. Aluekeräyksellä tarkoitetaan jätteiden keräystä pisteiltä, joihin kotitaloudet, jotka eivät kuulu kiinteistökohtaiseen keräykseen, voivat tuoda syntypaikkalajitellun kuiva- eli sekajätteensä. Tavoitteena oli myös saada tietoa siitä, minkälaiset ovat eri kuivajätehuoltovaihtoehtojen ilmastonmuutos- ja kustannusvaikutukset. Lisäksi tavoitteena oli selvittää, miten ympäristönäkökohdat voidaan ottaa huomioon kuljetuskilpailutuksissa. Tutkimuksessa kerättiin tietoa internetistä, opinnäytetöistä ja tieteellisistä artikkeleista sekä yritysten edustajilta. Kasvihuonekaasupäästöjen laskennassa hyödynnettiin GaBi 6.0 -elinkaariarviointiohjelmaa. Tutkimuksen perusteella aluekeräyspisteet kannattaa sijoittaa reiteille, joita asukkaat käyttävät vähintään kerran viikossa ja mitkä ovat optimaalisesti myös kuljetusurakoitsijan kannalta. Taajama-alueelle ei nähty suositeltavaksi sijoittaa aluekeräyspisteitä. Suositeltavina astioina aluekeräyspisteille nähtiin syväkeräyssäiliöt, joiden tyhjennys onnistuu samalla keräyskalustolla kuin kiinteistöjen jäteastioiden, kun ajoneuvo on varustettu puominosturilla. Suositeltavaksi nähtiin myös harventaa jäteastioiden talvityhjennystiheyksiä, jos tyhjennystiheys on vakio ympäri vuoden, sillä pääosa aluekeräyspisteiden käyttäjistä on loma-asukkaita. Tyhjennystiheyksien harvennuksella olisi mahdollista saavuttaa kustannussäästöjä. Tutkimuksessa laskettiin kuivajätteen elinkaarenaikaisia kasvihuonekaasupäästöjä kuivajätteen keräyksestä loppusijoitukseen ja energiahyötykäyttöön. Energiahyötykäyttökohteiksi valittiin Riihimäen, Kotkan sekä Leppävirran (suunnitteilla) jätteenpolttolaitokset. Tulosten pohjalta kuivajätteen energiahyötykäyttö oli loppusijoitusta selkeästi parempi vaihtoehto. Kuivajätteen keräys- ja kuljetuspäästöjen vaikutus oli pieni. Kuivajätteen kuljetusmatkan pituus jätteenpolttolaitokselle ei ole siis ratkaisevassa roolissa kokonaiskasvihuonekaasupäästöjä tarkasteltaessa. Etäisyyttä suurempi vaikutus onkin kuivajätteen koostumuksella, polttolaitosten vuosihyötysuhteilla ja korvattavilla polttoaineilla. Jatkossa suositellaan selvittämään vielä vaihtoehtoisia käsittelytapoja kuivajätteen sisältämälle sekamuovijakeelle, jonka poltosta aiheutuu merkittävä osuus (noin 74 %) kuivajätteen polton kasvihuonekaasupäästöistä. Ajankohtaisia kuljetuskilpailutuksia varten tarkasteltiin vielä tarkemmin keräys- ja kuljetuspäästöjä. Tulosten pohjalta havaittiin, että keräys- ja kuljetuspäästöjä on mahdollista vähentää reilusti (46–74 %) siirtymällä dieselistä biopolttoaineiden käyttöön. Tuloksiin vaikuttaa kuitenkin merkittävästi, minkälaisista raaka-aineista biopolttoaineet on valmistettu. Kuivajätteen keräyspäästöjä on mahdollista pienentää myös päivittämällä aluekeräyspisteverkostoa. Tutkimuksessa tarkasteltiin kustannuksia aluekeräyspisteiden astioiden uusinnasta tai korjauksesta kuivajätteen loppusijoitukseen tai energiahyötykäyttöön asti. Merkittävimmät kustannukset aiheutuivat kuivajätteen loppusijoituksesta, energiahyötykäytöstä sekä keräyksestä. Kustannusten näkökulmasta keräyksen rooli oli siis suurempi. Työn lopussa annettiin vielä vinkkejä, joiden avulla jätehuoltoyritykset voivat tehdä jätekuljetushankintoja ympäristönäkökohdat huomioiden. Usein selkein tapa huomioida ympäristönäkökohdat kuljetuskilpailutuksissa on asettaa riittävän tiukkoja pakollisia vaatimuksia, jolloin voi valita hinnaltaan halvimman vaihtoehdon. Kuljetuspalvelun hankinnassa tulee huomioida ainakin energiankulutus, hiilidioksidi-, typenoksidi-, hiilivety- ja hiukkaspäästöt. Lainsäädäntö ei määrää vähimmäistasoja, vaan hankintaa tehdessä kannattaa kartoittaa markkinatilanne, jotta vaatimukset osaa asettaa oikealle tasolle. Markkinoille kannattaa myös tiedottaa tulevaisuuden tarpeista ja suunnitelmista. Suuria hankintakokonaisuuksia suositellaan pilkottavan pienempiin osiin, jotta pienet ja keskisuuret yritykset pystyvät myös osallistumaan tarjouskilpailuihin. Kannustus innovaatioiden huomioimiseen hankinnoissa on lisääntynyt myös jätehuollon alalla. Selvitettyjen kasvihuonekaasupäästöjen perusteella oli merkille pantavaa, miten suuri vaikutus polttolaitoksen valinnalla oli kasvihuonekaasupäästöihin. Oleellista onkin huomioida ympäristönäkökohdat myös energiahyötykäyttökohdetta valittaessa.

Thermal reactions of the major hydrocarbon components of biomass gasification gas

Gasification of biomass is an efficient method process to produce liquid fuels, heat and electricity. It is interesting especially for the Nordic countries, where raw material for the processes is readily available. The thermal reactions of light hydrocarbons are a major challenge for industrial applications. At elevated temperatures, light hydrocarbons react spontaneously to form higher molecular weight compounds. In this thesis, this phenomenon was studied by literature survey, experimental work and modeling effort. The literature survey revealed that the change in tar composition is likely caused by the kinetic entropy. The role of the surface material is deemed to be an important factor in the reactivity of the system. The experimental results were in accordance with previous publications on the subject. The novelty of the experimental work lies in the used time interval for measurements combined with an industrially relevant temperature interval. The aspects which are covered in the modeling include screening of possible numerical approaches, testing of optimization methods and kinetic modelling. No significant numerical issues were observed, so the used calculation routines are adequate for the task. Evolutionary algorithms gave a better performance combined with better fit than the conventional iterative methods such as Simplex and Levenberg-Marquardt methods. Three models were fitted on experimental data. The LLNL model was used as a reference model to which two other models were compared. A compact model which included all the observed species was developed. The parameter estimation performed on that model gave slightly impaired fit to experimental data than LLNL model, but the difference was barely significant. The third tested model concentrated on the decomposition of hydrocarbons and included a theoretical description of the formation of carbon layer on the reactor walls. The fit to experimental data was extremely good. Based on the simulation results and literature findings, it is likely that the surface coverage of carbonaceous deposits is a major factor in thermal reactions.